Wall clock time and date at job start Mon Mar 30 2020 06:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34634 * 117.00462 * 2 1 4 4 O 1.21512 * 119.99811 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00534 * 179.97438 * 3 2 1 6 6 C 1.46924 * 120.63336 * 185.88215 * 5 3 2 7 7 H 1.09002 * 109.58708 * 113.84638 * 6 5 3 8 8 C 1.53002 * 109.70457 * 353.48609 * 6 5 3 9 9 C 1.52995 * 109.47067 * 179.90617 * 8 6 5 10 10 C 1.50702 * 109.47299 * 185.18712 * 9 8 6 11 11 H 1.08005 * 119.99274 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00215 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99955 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46851 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46759 * 120.00044 * 14 12 10 17 17 H 1.48497 * 109.47066 * 239.99683 * 14 12 10 18 18 C 1.53194 * 108.77638 * 233.63193 * 6 5 3 19 19 C 1.53040 * 109.31171 * 305.36456 * 18 6 5 20 20 C 1.53045 * 109.53628 * 61.36678 * 19 18 6 21 21 C 1.46934 * 120.62867 * 5.90951 * 5 3 2 22 22 H 1.08994 * 109.70131 * 246.22568 * 21 5 3 23 23 C 1.53002 * 109.58524 * 6.57922 * 21 5 3 24 24 H 1.09004 * 109.47215 * 59.99526 * 1 2 3 25 25 H 1.09002 * 109.47570 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46909 * 300.00036 * 1 2 3 27 27 H 1.08994 * 109.47418 * 299.91405 * 8 6 5 28 28 H 1.09004 * 109.46214 * 59.91234 * 8 6 5 29 29 H 1.09001 * 109.47823 * 305.19025 * 9 8 6 30 30 H 1.08999 * 109.47059 * 65.18781 * 9 8 6 31 31 H 0.97006 * 119.99647 * 179.97438 * 13 12 10 32 32 H 1.09005 * 109.49556 * 65.31745 * 18 6 5 33 33 H 1.08999 * 109.50102 * 185.41175 * 18 6 5 34 34 H 1.09009 * 109.45796 * 181.38352 * 19 18 6 35 35 H 1.08995 * 109.46684 * 301.34179 * 19 18 6 36 36 H 1.08997 * 109.50009 * 58.58862 * 20 19 18 37 37 H 1.09001 * 109.49251 * 178.68121 * 20 19 18 38 38 H 1.09002 * 109.47057 * 171.55569 * 23 21 5 39 39 H 1.09004 * 109.47087 * 291.55041 * 23 21 5 40 40 H 1.09000 * 109.47567 * 51.54958 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0909 2.5651 0.1301 7 1 4.6329 2.5998 1.0752 8 6 3.0617 3.6965 0.0871 9 6 3.7769 5.0420 0.2248 10 6 2.7559 6.1471 0.3105 11 1 1.7023 5.9130 0.2712 12 6 3.1669 7.4569 0.4391 13 7 4.4499 7.7418 0.4875 14 14 1.9013 8.8268 0.5447 15 1 0.5364 8.2467 0.4681 16 1 2.0601 9.5492 1.8324 17 1 2.1013 9.7734 -0.5819 18 6 5.0757 2.7225 -1.0327 19 6 6.0177 1.5167 -1.0648 20 6 5.2059 0.2389 -1.2890 21 6 4.2226 0.0534 -0.1291 22 1 4.7752 -0.1193 0.7944 23 6 3.3132 -1.1436 -0.4140 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.5264 3.6649 -0.8618 28 1 2.3544 3.5754 0.9076 29 1 4.3859 5.0391 1.1288 30 1 4.4159 5.2042 -0.6432 31 1 4.7390 8.6633 0.5776 32 1 4.5244 2.7786 -1.9714 33 1 5.6568 3.6345 -0.8966 34 1 6.7353 1.6381 -1.8764 35 1 6.5506 1.4468 -0.1166 36 1 4.6534 0.3183 -2.2252 37 1 5.8796 -0.6167 -1.3351 38 1 3.9232 -2.0135 -0.6577 39 1 2.7091 -1.3589 0.4674 40 1 2.6594 -0.9113 -1.2546 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082292012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:51 Heat of formation + Delta-G solvation = -93.201796 kcal Electronic energy + Delta-G solvation = -20294.859857 eV Core-core repulsion = 17302.340785 eV Total energy + Delta-G solvation = -2992.519072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04679 -39.41707 -37.67289 -35.98092 -34.40868 -33.88279 -31.63774 -28.76313 -28.29741 -26.79085 -25.00065 -23.86667 -22.39091 -21.49677 -20.92946 -18.65795 -18.52148 -17.82398 -17.26459 -16.60871 -16.13212 -15.71032 -15.49944 -15.33843 -14.81009 -14.41949 -14.36086 -14.04762 -13.87657 -13.56040 -13.24230 -13.10680 -12.86324 -12.81075 -12.46103 -12.35553 -12.14310 -11.97929 -11.83099 -11.68665 -11.46274 -11.34736 -11.25305 -11.02279 -10.54063 -10.32666 -9.57974 -8.20965 -6.30190 1.27052 1.35849 1.36408 1.50874 1.83520 2.39985 2.99814 3.11149 3.81531 3.88056 3.90735 4.04330 4.27720 4.31590 4.40882 4.41469 4.46650 4.61197 4.68853 4.74464 4.78302 4.88904 5.03321 5.04093 5.04844 5.15216 5.18701 5.25579 5.26794 5.36219 5.43835 5.48276 5.55745 5.69509 5.79652 5.92309 6.30787 6.49204 6.84774 7.35544 7.38904 8.90938 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.024685 B = 0.006019 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.034198 B = 4650.654658 C = 5655.500783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.345 6.345 3 C 0.629 3.371 4 O -0.598 6.598 5 N -0.588 5.588 6 C 0.164 3.836 7 H 0.075 0.925 8 C -0.073 4.073 9 C 0.026 3.974 10 C -0.541 4.541 11 H 0.043 0.957 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.272 1.272 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.122 4.122 21 C 0.129 3.871 22 H 0.089 0.911 23 C -0.144 4.144 24 H 0.049 0.951 25 H 0.139 0.861 26 H 0.048 0.952 27 H 0.038 0.962 28 H 0.046 0.954 29 H -0.007 1.007 30 H 0.002 0.998 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.648 -21.715 -2.552 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.259 6.259 3 C 0.385 3.615 4 O -0.489 6.489 5 N -0.329 5.329 6 C 0.063 3.937 7 H 0.093 0.907 8 C -0.111 4.111 9 C -0.012 4.012 10 C -0.580 4.580 11 H 0.061 0.939 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.786 3.214 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.160 4.160 21 C 0.027 3.973 22 H 0.107 0.893 23 C -0.201 4.201 24 H 0.068 0.932 25 H 0.156 0.844 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.012 0.988 30 H 0.021 0.979 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.491 -21.329 -2.536 21.485 hybrid contribution -0.878 1.452 0.123 1.701 sum -0.387 -19.877 -2.414 20.026 Atomic orbital electron populations 1.23422 0.76101 1.05091 1.01649 1.87128 1.23615 1.28278 1.86877 1.18765 0.83728 0.82526 0.76498 1.91136 1.65960 1.35272 1.56500 1.47527 1.01446 1.09420 1.74527 1.21299 0.92940 0.80551 0.98938 0.90746 1.21739 0.95591 0.92924 1.00845 1.19137 0.94882 0.92189 0.94993 1.21641 0.93343 0.93039 1.49929 0.93886 1.25887 0.97438 1.01295 0.94757 1.70077 1.15630 1.19762 1.51433 0.85459 0.79031 0.78709 0.78219 1.19652 1.19774 1.19761 1.21947 0.97329 0.99999 0.97114 1.21560 0.97316 0.93146 1.03270 1.21986 0.97757 0.98858 0.97393 1.21700 0.92500 0.83193 0.99875 0.89332 1.22190 0.98248 0.96266 1.03390 0.93167 0.84351 0.93300 0.94332 0.93496 0.98846 0.97947 0.92654 0.93086 0.91458 0.90117 0.90725 0.92321 0.87271 0.88604 0.90722 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.35 -9.18 5.18 -55.44 -0.29 -9.47 16 3 C 0.63 22.33 8.09 129.79 1.05 23.38 16 4 O -0.60 -26.92 11.55 19.80 0.23 -26.69 16 5 N -0.59 -18.67 2.97 -901.40 -2.68 -21.35 16 6 C 0.16 6.14 3.00 44.98 0.14 6.27 16 7 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 8 C -0.07 -3.58 3.08 30.59 0.09 -3.49 16 9 C 0.03 1.45 4.49 29.85 0.13 1.59 16 10 C -0.54 -33.93 9.11 25.60 0.23 -33.70 16 11 H 0.04 2.74 7.74 -2.91 -0.02 2.71 16 12 C 0.00 0.24 5.46 84.65 0.46 0.70 16 13 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 14 Si 0.96 47.23 29.54 68.60 2.03 49.25 16 15 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 18 C -0.13 -4.12 4.87 30.67 0.15 -3.97 16 19 C -0.12 -2.56 5.88 30.62 0.18 -2.38 16 20 C -0.12 -2.23 5.37 30.67 0.16 -2.07 16 21 C 0.13 2.73 3.49 44.97 0.16 2.89 16 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 23 C -0.14 -2.46 7.55 71.98 0.54 -1.91 16 24 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 2.02 7.03 -2.39 -0.02 2.00 16 28 H 0.05 2.50 6.47 -2.38 -0.02 2.49 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.00 0.13 6.87 -2.39 -0.02 0.11 16 31 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 32 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.07 2.47 6.89 -2.39 -0.02 2.45 16 34 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.10 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.07 1.35 6.56 -2.38 -0.02 1.33 16 40 H 0.06 1.18 6.68 -2.39 -0.02 1.17 16 Total: -1.00 -75.70 309.04 5.07 -70.62 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.00 Total: 6.42 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.50 Total: -10.81 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -2.39 Total: -79.33 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.06 Total: -36.16 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -75.70 5.07 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082292012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.580 kcal (2) G-P(sol) polarization free energy of solvation -75.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds