Wall clock time and date at job start Mon Mar 30 2020 06:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99886 * 2 1 4 4 C 1.50702 * 109.46960 * 290.62917 * 3 2 1 5 5 H 1.08001 * 120.00364 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99797 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00078 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47180 * 60.00205 * 8 6 4 10 10 H 1.48493 * 109.47023 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47060 * 300.00372 * 8 6 4 12 12 C 1.46893 * 111.00140 * 123.95891 * 2 1 3 13 13 C 1.52999 * 109.47583 * 56.36544 * 12 2 1 14 14 C 1.50706 * 109.46751 * 54.77411 * 13 12 2 15 15 O 1.20821 * 119.99985 * 354.01290 * 14 13 12 16 16 O 1.34230 * 119.99609 * 174.01293 * 14 13 12 17 17 C 1.52999 * 109.46925 * 296.36638 * 12 2 1 18 18 C 1.53008 * 109.47142 * 180.02562 * 17 12 2 19 19 C 1.53005 * 109.47137 * 59.99533 * 18 17 12 20 20 C 1.52995 * 109.47147 * 300.00251 * 19 18 17 21 21 C 1.53001 * 109.47213 * 60.00324 * 20 19 18 22 22 H 1.09000 * 109.46626 * 296.03781 * 1 2 3 23 23 H 1.08997 * 109.47396 * 56.04457 * 1 2 3 24 24 H 1.09000 * 109.46618 * 176.04805 * 1 2 3 25 25 H 1.08999 * 109.46622 * 50.62623 * 3 2 1 26 26 H 1.08991 * 109.47077 * 170.63042 * 3 2 1 27 27 H 0.96998 * 119.99884 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47406 * 174.77198 * 13 12 2 29 29 H 1.08996 * 109.46963 * 294.77863 * 13 12 2 30 30 H 0.96701 * 116.99660 * 180.02562 * 16 14 13 31 31 H 1.08995 * 109.47631 * 60.00373 * 17 12 2 32 32 H 1.09002 * 109.47352 * 299.99914 * 17 12 2 33 33 H 1.09002 * 109.46613 * 299.99982 * 18 17 12 34 34 H 1.09001 * 109.46837 * 179.97438 * 18 17 12 35 35 H 1.09007 * 109.46346 * 60.00435 * 19 18 17 36 36 H 1.09001 * 109.47128 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46822 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47123 * 299.99926 * 20 19 18 39 39 H 1.08997 * 109.47439 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47400 * 59.99772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7082 2.0198 -1.3297 5 1 1.1863 1.4684 -2.0979 6 6 2.1106 3.3173 -1.5653 7 7 2.7456 3.9889 -0.6298 8 14 1.7551 4.1208 -3.2138 9 1 0.2882 4.1530 -3.4427 10 1 2.2871 5.5071 -3.2137 11 1 2.4078 3.3406 -4.2957 12 6 1.9955 -0.7660 1.1375 13 6 1.4325 -2.1881 1.0991 14 6 1.7316 -2.8108 -0.2403 15 8 2.2363 -2.1481 -1.1154 16 8 1.4373 -4.1017 -0.4610 17 6 1.5802 -0.0882 2.4447 18 6 2.1291 -0.8857 3.6295 19 6 3.6559 -0.9389 3.5451 20 6 4.0711 -1.6167 2.2379 21 6 3.5223 -0.8191 1.0531 22 1 -0.3632 0.4511 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3632 -1.0253 -0.0708 25 1 1.5170 1.9442 0.7944 26 1 3.0722 1.3473 0.1673 27 1 3.0291 4.9016 -0.7956 28 1 1.8937 -2.7830 1.8874 29 1 0.3538 -2.1560 1.2520 30 1 1.6479 -4.4567 -1.3355 31 1 0.4926 -0.0501 2.5047 32 1 1.9814 0.9249 2.4722 33 1 1.7282 -1.8990 3.6023 34 1 1.8336 -0.4026 4.5608 35 1 4.0566 0.0745 3.5724 36 1 4.0469 -1.5066 4.3894 37 1 5.1589 -1.6541 2.1776 38 1 3.6703 -2.6299 2.2107 39 1 3.8185 -1.3017 0.1218 40 1 3.9232 0.1941 1.0803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083632513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:45 Heat of formation + Delta-G solvation = -90.069825 kcal Electronic energy + Delta-G solvation = -20829.798336 eV Core-core repulsion = 17837.415076 eV Total energy + Delta-G solvation = -2992.383260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49376 -38.72295 -35.59939 -35.15364 -32.56650 -30.72047 -30.43427 -28.03088 -26.81974 -24.50469 -22.49991 -22.20377 -21.14427 -20.36521 -17.71627 -17.52615 -16.37533 -15.94518 -15.87683 -15.17267 -14.55911 -14.02200 -13.88768 -13.83284 -13.36618 -13.18867 -12.56686 -12.45802 -12.16115 -11.93072 -11.80274 -11.44786 -11.21165 -11.10680 -10.97723 -10.80754 -10.77360 -10.61570 -10.20536 -10.14368 -9.97100 -9.80878 -9.63545 -9.49029 -9.06854 -8.31138 -6.96577 -5.93531 -3.92619 2.78300 3.39000 3.42342 3.43701 3.46607 4.49170 4.80975 4.93924 5.02872 5.16616 5.38820 5.39683 5.42528 5.52789 5.62967 5.70838 5.81571 5.86429 5.92931 5.97655 6.05095 6.13964 6.23856 6.33105 6.40078 6.41022 6.55798 6.58936 6.78217 6.82146 6.87037 7.01692 7.43185 7.44315 7.92190 8.23067 8.32680 8.44425 8.68997 9.14986 9.70218 11.17131 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.007537 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.870220 B = 3714.226074 C = 4402.207820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.511 5.511 3 C 0.192 3.808 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.053 3.947 7 N -0.902 5.902 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.128 3.872 13 C -0.103 4.103 14 C 0.462 3.538 15 O -0.457 6.457 16 O -0.537 6.537 17 C -0.149 4.149 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.114 4.114 22 H 0.014 0.986 23 H 0.072 0.928 24 H 0.038 0.962 25 H -0.010 1.010 26 H 0.036 0.964 27 H 0.260 0.740 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.401 0.599 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -13.586 7.580 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.234 5.234 3 C 0.068 3.932 4 C -0.537 4.537 5 H 0.079 0.921 6 C -0.147 4.147 7 N -0.542 5.542 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.037 3.963 13 C -0.141 4.141 14 C 0.301 3.699 15 O -0.339 6.339 16 O -0.350 6.350 17 C -0.188 4.188 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.152 4.152 22 H 0.032 0.968 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.008 0.992 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.086 -13.245 7.284 15.155 hybrid contribution -0.389 0.756 -0.699 1.101 sum -1.475 -12.489 6.584 14.195 Atomic orbital electron populations 1.22295 0.89888 0.99009 1.00524 1.62417 1.05690 1.17617 1.37644 1.19783 0.95671 0.81438 0.96349 1.21158 1.36147 0.96921 0.99492 0.92109 1.24959 0.95586 0.97305 0.96862 1.69945 1.40021 1.11055 1.33190 0.86599 0.78437 0.78131 0.84448 1.20453 1.21478 1.20270 1.20748 0.95246 0.90460 0.89800 1.21634 1.03446 0.96911 0.92107 1.23383 0.76247 0.79014 0.91224 1.90844 1.37092 1.61110 1.44860 1.84541 1.79923 1.29275 1.41266 1.22256 1.00655 1.00930 0.94925 1.21543 0.95748 1.00009 0.98095 1.21545 0.95894 1.01114 0.97127 1.21640 1.00212 0.98883 0.95133 1.21745 0.93656 1.01790 0.98006 0.96803 0.90882 0.94328 0.99180 0.94600 0.93079 0.88149 0.88515 0.74153 0.92049 0.90443 0.92306 0.92481 0.91794 0.92631 0.92202 0.92592 0.90343 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 8.58 60.07 0.52 1.14 16 2 N -0.51 -11.06 2.83 -228.60 -0.65 -11.70 16 3 C 0.19 5.01 3.75 -4.97 -0.02 4.99 16 4 C -0.50 -14.40 8.50 -34.44 -0.29 -14.69 16 5 H 0.06 1.78 7.35 -52.49 -0.39 1.39 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 8 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.13 2.22 0.05 -131.60 -0.01 2.22 16 13 C -0.10 -1.48 3.59 -27.88 -0.10 -1.58 16 14 C 0.46 7.29 7.50 36.01 0.27 7.56 16 15 O -0.46 -9.13 13.93 -18.75 -0.26 -9.39 16 16 O -0.54 -6.66 13.42 -39.26 -0.53 -7.19 16 17 C -0.15 -2.37 4.06 -26.73 -0.11 -2.48 16 18 C -0.12 -1.46 5.65 -26.72 -0.15 -1.61 16 19 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 20 C -0.12 -1.63 5.65 -26.73 -0.15 -1.78 16 21 C -0.11 -2.02 4.28 -26.73 -0.11 -2.13 16 22 H 0.01 0.26 6.39 -51.93 -0.33 -0.07 16 23 H 0.07 1.58 7.00 -51.93 -0.36 1.22 16 24 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 25 H -0.01 -0.26 7.03 -51.93 -0.36 -0.63 16 26 H 0.04 1.00 5.69 -51.93 -0.30 0.71 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.10 1.21 4.83 -51.93 -0.25 0.96 16 29 H 0.10 1.29 6.66 -51.93 -0.35 0.94 16 30 H 0.40 3.44 9.10 45.56 0.41 3.86 16 31 H 0.06 0.96 6.48 -51.93 -0.34 0.62 16 32 H 0.08 1.45 6.72 -51.93 -0.35 1.10 16 33 H 0.06 0.65 6.55 -51.93 -0.34 0.31 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.68 6.32 -51.93 -0.33 0.36 16 39 H 0.08 1.53 6.20 -51.93 -0.32 1.21 16 40 H 0.08 1.54 6.13 -51.93 -0.32 1.23 16 LS Contribution 296.79 15.07 4.47 4.47 Total: -1.00 -32.54 296.79 -6.72 -39.26 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.06 Total: 2.20 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.41 Total: -8.57 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.09 Total: -38.12 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.79 Total: -16.59 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.54 -6.72 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.807 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds