Wall clock time and date at job start Mon Mar 30 2020 06:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46902 * 110.99886 * 2 1 4 4 C 1.50702 * 109.46960 * 290.62917 * 3 2 1 5 5 H 1.08001 * 120.00364 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99797 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00078 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47180 * 60.00205 * 8 6 4 10 10 H 1.48493 * 109.47023 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47060 * 300.00372 * 8 6 4 12 12 C 1.46893 * 111.00140 * 123.95891 * 2 1 3 13 13 C 1.52999 * 109.47583 * 56.36544 * 12 2 1 14 14 C 1.50706 * 109.46751 * 54.77411 * 13 12 2 15 15 O 1.20821 * 119.99985 * 354.01290 * 14 13 12 16 16 O 1.34230 * 119.99609 * 174.01293 * 14 13 12 17 17 C 1.52999 * 109.46925 * 296.36638 * 12 2 1 18 18 C 1.53008 * 109.47142 * 180.02562 * 17 12 2 19 19 C 1.53005 * 109.47137 * 59.99533 * 18 17 12 20 20 C 1.52995 * 109.47147 * 300.00251 * 19 18 17 21 21 C 1.53001 * 109.47213 * 60.00324 * 20 19 18 22 22 H 1.09000 * 109.46626 * 296.03781 * 1 2 3 23 23 H 1.08997 * 109.47396 * 56.04457 * 1 2 3 24 24 H 1.09000 * 109.46618 * 176.04805 * 1 2 3 25 25 H 1.08999 * 109.46622 * 50.62623 * 3 2 1 26 26 H 1.08991 * 109.47077 * 170.63042 * 3 2 1 27 27 H 0.96998 * 119.99884 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47406 * 174.77198 * 13 12 2 29 29 H 1.08996 * 109.46963 * 294.77863 * 13 12 2 30 30 H 0.96701 * 116.99660 * 180.02562 * 16 14 13 31 31 H 1.08995 * 109.47631 * 60.00373 * 17 12 2 32 32 H 1.09002 * 109.47352 * 299.99914 * 17 12 2 33 33 H 1.09002 * 109.46613 * 299.99982 * 18 17 12 34 34 H 1.09001 * 109.46837 * 179.97438 * 18 17 12 35 35 H 1.09007 * 109.46346 * 60.00435 * 19 18 17 36 36 H 1.09001 * 109.47128 * 179.97438 * 19 18 17 37 37 H 1.09006 * 109.46822 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.47123 * 299.99926 * 20 19 18 39 39 H 1.08997 * 109.47439 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47400 * 59.99772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7082 2.0198 -1.3297 5 1 1.1863 1.4684 -2.0979 6 6 2.1106 3.3173 -1.5653 7 7 2.7456 3.9889 -0.6298 8 14 1.7551 4.1208 -3.2138 9 1 0.2882 4.1530 -3.4427 10 1 2.2871 5.5071 -3.2137 11 1 2.4078 3.3406 -4.2957 12 6 1.9955 -0.7660 1.1375 13 6 1.4325 -2.1881 1.0991 14 6 1.7316 -2.8108 -0.2403 15 8 2.2363 -2.1481 -1.1154 16 8 1.4373 -4.1017 -0.4610 17 6 1.5802 -0.0882 2.4447 18 6 2.1291 -0.8857 3.6295 19 6 3.6559 -0.9389 3.5451 20 6 4.0711 -1.6167 2.2379 21 6 3.5223 -0.8191 1.0531 22 1 -0.3632 0.4511 0.9234 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3632 -1.0253 -0.0708 25 1 1.5170 1.9442 0.7944 26 1 3.0722 1.3473 0.1673 27 1 3.0291 4.9016 -0.7956 28 1 1.8937 -2.7830 1.8874 29 1 0.3538 -2.1560 1.2520 30 1 1.6479 -4.4567 -1.3355 31 1 0.4926 -0.0501 2.5047 32 1 1.9814 0.9249 2.4722 33 1 1.7282 -1.8990 3.6023 34 1 1.8336 -0.4026 4.5608 35 1 4.0566 0.0745 3.5724 36 1 4.0469 -1.5066 4.3894 37 1 5.1589 -1.6541 2.1776 38 1 3.6703 -2.6299 2.2107 39 1 3.8185 -1.3017 0.1218 40 1 3.9232 0.1941 1.0803 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083632513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:45 Heat of formation + Delta-G solvation = -112.442928 kcal Electronic energy + Delta-G solvation = -20830.768507 eV Core-core repulsion = 17837.415076 eV Total energy + Delta-G solvation = -2993.353430 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80780 -39.99006 -36.82199 -36.65882 -34.64782 -32.11269 -31.73821 -29.43107 -28.72765 -26.20485 -24.14128 -23.43923 -22.52811 -21.67690 -19.03844 -18.73861 -18.46820 -17.41168 -17.11267 -16.57651 -16.40984 -15.46925 -15.28123 -15.09676 -14.97527 -14.63665 -13.96847 -13.84867 -13.71174 -13.48535 -13.11849 -13.03390 -12.71454 -12.65517 -12.56571 -12.44369 -12.23308 -12.13692 -11.94515 -11.57361 -11.35630 -11.27788 -11.03667 -11.01146 -10.85062 -10.54099 -8.68774 -8.17306 -6.26276 1.36228 1.40153 1.47909 1.56999 2.34576 2.39787 3.12975 3.34644 3.64155 3.83769 4.02281 4.23651 4.24065 4.31433 4.44069 4.48047 4.59682 4.63879 4.66991 4.74579 4.82488 4.84149 4.99261 5.10442 5.14972 5.17831 5.25947 5.30699 5.33290 5.33877 5.47614 5.53302 5.62413 5.69149 5.91247 6.14893 6.48407 6.80626 6.90857 7.32805 7.42141 8.91959 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.007537 C = 0.006359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.870220 B = 3714.226074 C = 4402.207820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.525 5.525 3 C 0.215 3.785 4 C -0.519 4.519 5 H 0.052 0.948 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.123 3.877 13 C -0.099 4.099 14 C 0.469 3.531 15 O -0.510 6.510 16 O -0.522 6.522 17 C -0.143 4.143 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.111 4.111 22 H 0.021 0.979 23 H 0.045 0.955 24 H 0.071 0.929 25 H -0.037 1.037 26 H 0.006 0.994 27 H 0.263 0.737 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.419 0.581 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.365 -15.972 8.549 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.247 5.247 3 C 0.089 3.911 4 C -0.558 4.558 5 H 0.070 0.930 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.033 3.967 13 C -0.137 4.137 14 C 0.310 3.690 15 O -0.396 6.396 16 O -0.336 6.336 17 C -0.182 4.182 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.150 4.150 21 C -0.149 4.149 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.089 0.911 25 H -0.019 1.019 26 H 0.024 0.976 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.280 0.720 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.083 -15.680 8.263 17.846 hybrid contribution -0.067 1.423 -1.004 1.743 sum -2.149 -14.257 7.259 16.142 Atomic orbital electron populations 1.22254 0.88750 1.00583 0.99690 1.62275 1.06816 1.14888 1.40769 1.19300 0.93735 0.83845 0.94203 1.21483 1.36271 0.97580 1.00439 0.93016 1.25848 0.95205 0.97884 1.00735 1.70073 1.40751 1.11414 1.35233 0.85523 0.78780 0.77244 0.79572 1.19259 1.20493 1.19972 1.20876 0.94919 0.92017 0.88883 1.21647 1.04777 0.94648 0.92590 1.23580 0.74881 0.79516 0.91014 1.90856 1.39621 1.62586 1.46543 1.84483 1.79064 1.27348 1.42729 1.22159 1.00874 0.99208 0.96006 1.21547 0.95449 1.01026 0.96655 1.21559 0.96101 1.00309 0.97615 1.21607 1.00605 0.99303 0.93516 1.21661 0.94331 0.99758 0.99140 0.96063 0.93606 0.91057 1.01937 0.97556 0.92850 0.84608 0.86446 0.72018 0.91461 0.94696 0.89195 0.91082 0.94104 0.89281 0.91614 0.89947 0.92706 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 8.58 127.69 1.10 2.50 16 2 N -0.52 -23.44 2.83 -877.14 -2.48 -25.92 16 3 C 0.22 11.96 3.75 85.56 0.32 12.28 16 4 C -0.52 -31.40 8.50 25.60 0.22 -31.18 16 5 H 0.05 3.15 7.35 -2.91 -0.02 3.13 16 6 C 0.00 0.04 5.46 84.66 0.46 0.51 16 7 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 8 Si 0.96 46.88 29.54 68.60 2.03 48.91 16 9 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.12 4.24 0.05 3.53 0.00 4.24 16 13 C -0.10 -2.54 3.59 29.85 0.11 -2.43 16 14 C 0.47 13.75 7.50 71.24 0.53 14.28 16 15 O -0.51 -20.35 13.93 21.98 0.31 -20.04 16 16 O -0.52 -11.14 13.42 -51.41 -0.69 -11.83 16 17 C -0.14 -4.52 4.06 30.60 0.12 -4.40 16 18 C -0.11 -2.40 5.65 30.60 0.17 -2.23 16 19 C -0.12 -2.70 5.92 30.59 0.18 -2.52 16 20 C -0.11 -2.83 5.65 30.59 0.17 -2.66 16 21 C -0.11 -4.03 4.28 30.60 0.13 -3.90 16 22 H 0.02 0.79 6.39 -2.39 -0.02 0.78 16 23 H 0.05 2.03 7.00 -2.39 -0.02 2.01 16 24 H 0.07 2.32 6.15 -2.39 -0.01 2.30 16 25 H -0.04 -2.20 7.03 -2.39 -0.02 -2.21 16 26 H 0.01 0.39 5.69 -2.39 -0.01 0.38 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.14 2.55 4.83 -2.39 -0.01 2.54 16 29 H 0.12 2.59 6.66 -2.39 -0.02 2.58 16 30 H 0.42 5.95 9.10 -74.06 -0.67 5.27 16 31 H 0.07 2.01 6.48 -2.39 -0.02 1.99 16 32 H 0.03 1.38 6.72 -2.39 -0.02 1.36 16 33 H 0.09 1.48 6.55 -2.39 -0.02 1.47 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 1.66 6.32 -2.39 -0.02 1.65 16 39 H 0.05 2.22 6.20 -2.39 -0.01 2.21 16 40 H 0.03 1.45 6.13 -2.39 -0.01 1.43 16 Total: -1.00 -75.31 296.79 3.35 -71.96 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.38 Total: 10.55 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: 3.52 Total: -15.50 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -2.20 Total: -84.05 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -0.38 Total: -31.87 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -75.31 3.35 -71.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083632513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.479 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds