Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46957 * 2 1 4 4 C 1.52999 * 109.47057 * 240.00302 * 2 1 3 5 5 O 1.45203 * 109.47046 * 119.99945 * 2 1 3 6 6 C 1.34633 * 116.99836 * 60.00180 * 5 2 1 7 7 O 1.21514 * 120.00006 * 0.02562 * 6 5 2 8 8 N 1.34769 * 119.99799 * 179.97438 * 6 5 2 9 9 C 1.47427 * 125.65260 * 4.95849 * 8 6 5 10 10 C 1.54907 * 104.83184 * 204.09190 * 9 8 6 11 11 C 1.55150 * 101.58274 * 322.98733 * 10 9 8 12 12 C 1.47027 * 125.64732 * 184.91039 * 8 6 5 13 13 H 1.09005 * 109.88322 * 59.56211 * 12 8 6 14 14 C 1.52994 * 110.01279 * 298.46927 * 12 8 6 15 15 C 1.50706 * 109.47202 * 176.66105 * 14 12 8 16 16 H 1.08000 * 119.99662 * 4.97404 * 15 14 12 17 17 C 1.37877 * 119.99698 * 184.97242 * 15 14 12 18 18 N 1.31510 * 120.00424 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99638 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46858 * 60.00203 * 19 17 15 21 21 H 1.48493 * 109.46818 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47235 * 300.00358 * 19 17 15 23 23 H 1.08996 * 109.47063 * 300.00104 * 1 2 3 24 24 H 1.08998 * 109.46622 * 59.99878 * 1 2 3 25 25 H 1.08995 * 109.46554 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46854 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47392 * 300.00056 * 3 2 1 28 28 H 1.09003 * 109.46973 * 59.99884 * 3 2 1 29 29 H 1.08998 * 109.46831 * 299.99535 * 4 2 1 30 30 H 1.08995 * 109.47221 * 59.99988 * 4 2 1 31 31 H 1.09000 * 109.46882 * 180.02562 * 4 2 1 32 32 H 1.08993 * 110.36566 * 85.24861 * 9 8 6 33 33 H 1.09002 * 110.35997 * 322.92741 * 9 8 6 34 34 H 1.08996 * 111.00497 * 81.06152 * 10 9 8 35 35 H 1.09001 * 111.00141 * 204.87605 * 10 9 8 36 36 H 1.09000 * 110.72003 * 153.87055 * 11 10 9 37 37 H 1.09000 * 110.71952 * 276.96067 * 11 10 9 38 38 H 1.08998 * 109.47363 * 296.65869 * 14 12 8 39 39 H 1.09002 * 109.47193 * 56.65961 * 14 12 8 40 40 H 0.97005 * 120.00112 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6656 2.4166 9 6 2.8315 -2.1142 3.5508 10 6 3.5710 -3.3313 4.1603 11 6 2.5115 -4.4530 3.9975 12 6 1.8346 -4.0972 2.6571 13 1 2.2751 -4.6851 1.8518 14 6 0.3326 -4.3756 2.7426 15 6 0.1047 -5.8562 2.9071 16 1 0.9465 -6.5220 3.0273 17 6 -1.1785 -6.3606 2.9041 18 7 -2.2035 -5.5499 2.7572 19 14 -1.4609 -8.1960 3.1073 20 1 -0.9033 -8.6414 4.4095 21 1 -2.9180 -8.4797 3.0691 22 1 -0.7859 -8.9259 2.0041 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6768 -1.7488 -1.2492 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7216 -1.2490 32 1 2.1561 -1.6742 4.2845 33 1 3.5482 -1.3714 3.2003 34 1 4.4744 -3.5622 3.5959 35 1 3.8025 -3.1613 5.2118 36 1 2.9905 -5.4304 3.9402 37 1 1.7917 -4.4252 4.8155 38 1 -0.0869 -3.8462 3.5981 39 1 -0.1531 -4.0324 1.8291 40 1 -3.1062 -5.9049 2.7547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084498349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = -90.917580 kcal Electronic energy + Delta-G solvation = -20147.814116 eV Core-core repulsion = 17155.394095 eV Total energy + Delta-G solvation = -2992.420021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33133 -38.32082 -35.94515 -33.85046 -32.99977 -30.95444 -30.22324 -27.29988 -27.17415 -26.07253 -23.90797 -22.20096 -21.29263 -19.83346 -18.65895 -17.21994 -16.62401 -16.06848 -15.63062 -15.08723 -14.60775 -14.27317 -14.06024 -13.51287 -13.03704 -12.76674 -12.64908 -12.41041 -12.34319 -11.99005 -11.92324 -11.70905 -11.59280 -11.31052 -11.08377 -10.99436 -10.93037 -10.74705 -10.66646 -10.32125 -10.12624 -9.90834 -9.53790 -9.42257 -8.99281 -8.26941 -7.96536 -5.93048 -3.95896 2.60140 3.36712 3.41413 3.42955 3.45451 4.32407 4.52351 4.88374 4.90877 4.97374 5.06881 5.21300 5.31378 5.42722 5.53318 5.64035 5.70886 5.78862 5.83647 5.86341 5.92100 5.98288 6.03982 6.07875 6.15300 6.29955 6.46257 6.51832 6.60872 6.70203 6.86274 6.91897 7.00637 7.73889 7.87798 8.12804 8.15422 8.45045 8.94729 9.12665 9.66732 11.18314 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.006161 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.286285 B = 4543.772174 C = 5377.863561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.371 6.371 6 C 0.661 3.339 7 O -0.553 6.553 8 N -0.599 5.599 9 C 0.106 3.894 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.156 3.844 13 H 0.065 0.935 14 C 0.014 3.986 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.011 0.989 39 H 0.043 0.957 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 11.601 -1.502 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.287 6.287 6 C 0.416 3.584 7 O -0.441 6.441 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.176 4.176 11 C -0.151 4.151 12 C 0.056 3.944 13 H 0.083 0.917 14 C -0.024 4.024 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.447 11.541 -1.905 15.683 hybrid contribution -0.336 -0.930 0.074 0.991 sum 10.111 10.611 -1.831 14.771 Atomic orbital electron populations 1.22516 0.94039 1.05647 1.01916 1.21943 0.94422 0.91174 0.82548 1.21829 1.01851 0.93045 1.02762 1.22509 1.01111 1.03958 0.96385 1.86257 1.71802 1.24540 1.46058 1.17500 0.79161 0.79931 0.81828 1.90928 1.39984 1.69974 1.43231 1.47492 1.56958 1.11252 1.18303 1.22220 0.94474 0.96445 0.88634 1.22820 0.98329 0.95660 1.00760 1.22617 0.96995 0.97711 0.97809 1.21928 1.00673 0.75794 0.95999 0.91662 1.19496 0.87681 0.96570 0.98644 1.21041 0.92115 0.92297 1.50085 0.92648 1.24987 0.96251 0.97628 0.95375 1.69978 0.98496 1.34579 1.49972 0.86671 0.76990 0.85791 0.78588 1.20272 1.21373 1.20270 0.92352 0.91620 0.88830 0.91810 0.90498 0.91684 0.89068 0.91562 0.92564 0.91752 0.91155 0.91217 0.90378 0.90464 0.89951 0.97038 0.93858 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 37.16 0.31 -2.48 16 2 C 0.14 1.98 1.13 -90.61 -0.10 1.88 16 3 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 4 C -0.18 -2.57 8.37 37.16 0.31 -2.26 16 5 O -0.37 -6.45 9.39 -40.30 -0.38 -6.83 16 6 C 0.66 13.62 7.75 54.05 0.42 14.03 16 7 O -0.55 -13.03 10.70 -19.28 -0.21 -13.23 16 8 N -0.60 -11.76 3.07 -168.76 -0.52 -12.28 16 9 C 0.11 1.60 6.95 -2.53 -0.02 1.58 16 10 C -0.14 -1.84 7.08 -24.59 -0.17 -2.02 16 11 C -0.11 -1.96 5.83 -24.90 -0.15 -2.11 16 12 C 0.16 3.36 2.89 -66.95 -0.19 3.16 16 13 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.01 0.37 4.44 -27.88 -0.12 0.25 16 15 C -0.52 -14.63 8.67 -34.44 -0.30 -14.92 16 16 H 0.06 1.48 7.56 -52.49 -0.40 1.09 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.09 1.78 5.88 -51.93 -0.31 1.48 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.59 5.88 -51.93 -0.31 1.28 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.52 7.81 -51.93 -0.41 1.11 16 38 H 0.01 0.32 8.07 -51.93 -0.42 -0.10 16 39 H 0.04 1.33 6.60 -51.93 -0.34 0.98 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 318.89 15.07 4.81 4.81 Total: -1.00 -32.76 318.89 -7.16 -39.93 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.80 Total: -0.04 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 0.22 Total: -2.39 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.22 Total: -39.10 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.58 Total: -20.06 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.76 -7.16 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084498349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.991 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds