Wall clock time and date at job start Mon Mar 30 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46957 * 2 1 4 4 C 1.52999 * 109.47057 * 240.00302 * 2 1 3 5 5 O 1.45203 * 109.47046 * 119.99945 * 2 1 3 6 6 C 1.34633 * 116.99836 * 60.00180 * 5 2 1 7 7 O 1.21514 * 120.00006 * 0.02562 * 6 5 2 8 8 N 1.34769 * 119.99799 * 179.97438 * 6 5 2 9 9 C 1.47427 * 125.65260 * 4.95849 * 8 6 5 10 10 C 1.54907 * 104.83184 * 204.09190 * 9 8 6 11 11 C 1.55150 * 101.58274 * 322.98733 * 10 9 8 12 12 C 1.47027 * 125.64732 * 184.91039 * 8 6 5 13 13 H 1.09005 * 109.88322 * 59.56211 * 12 8 6 14 14 C 1.52994 * 110.01279 * 298.46927 * 12 8 6 15 15 C 1.50706 * 109.47202 * 176.66105 * 14 12 8 16 16 H 1.08000 * 119.99662 * 4.97404 * 15 14 12 17 17 C 1.37877 * 119.99698 * 184.97242 * 15 14 12 18 18 N 1.31510 * 120.00424 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99638 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46858 * 60.00203 * 19 17 15 21 21 H 1.48493 * 109.46818 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47235 * 300.00358 * 19 17 15 23 23 H 1.08996 * 109.47063 * 300.00104 * 1 2 3 24 24 H 1.08998 * 109.46622 * 59.99878 * 1 2 3 25 25 H 1.08995 * 109.46554 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46854 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47392 * 300.00056 * 3 2 1 28 28 H 1.09003 * 109.46973 * 59.99884 * 3 2 1 29 29 H 1.08998 * 109.46831 * 299.99535 * 4 2 1 30 30 H 1.08995 * 109.47221 * 59.99988 * 4 2 1 31 31 H 1.09000 * 109.46882 * 180.02562 * 4 2 1 32 32 H 1.08993 * 110.36566 * 85.24861 * 9 8 6 33 33 H 1.09002 * 110.35997 * 322.92741 * 9 8 6 34 34 H 1.08996 * 111.00497 * 81.06152 * 10 9 8 35 35 H 1.09001 * 111.00141 * 204.87605 * 10 9 8 36 36 H 1.09000 * 110.72003 * 153.87055 * 11 10 9 37 37 H 1.09000 * 110.71952 * 276.96067 * 11 10 9 38 38 H 1.08998 * 109.47363 * 296.65869 * 14 12 8 39 39 H 1.09002 * 109.47193 * 56.65961 * 14 12 8 40 40 H 0.97005 * 120.00112 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6656 2.4166 9 6 2.8315 -2.1142 3.5508 10 6 3.5710 -3.3313 4.1603 11 6 2.5115 -4.4530 3.9975 12 6 1.8346 -4.0972 2.6571 13 1 2.2751 -4.6851 1.8518 14 6 0.3326 -4.3756 2.7426 15 6 0.1047 -5.8562 2.9071 16 1 0.9465 -6.5220 3.0273 17 6 -1.1785 -6.3606 2.9041 18 7 -2.2035 -5.5499 2.7572 19 14 -1.4609 -8.1960 3.1073 20 1 -0.9033 -8.6414 4.4095 21 1 -2.9180 -8.4797 3.0691 22 1 -0.7859 -8.9259 2.0041 23 1 -0.3633 0.5138 0.8899 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9564 0.8900 29 1 1.6768 -1.7488 -1.2492 30 1 1.6767 -0.2073 -2.1392 31 1 3.1301 -0.7216 -1.2490 32 1 2.1561 -1.6742 4.2845 33 1 3.5482 -1.3714 3.2003 34 1 4.4744 -3.5622 3.5959 35 1 3.8025 -3.1613 5.2118 36 1 2.9905 -5.4304 3.9402 37 1 1.7917 -4.4252 4.8155 38 1 -0.0869 -3.8462 3.5981 39 1 -0.1531 -4.0324 1.8291 40 1 -3.1062 -5.9049 2.7547 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084498349.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:47 Heat of formation + Delta-G solvation = -111.893350 kcal Electronic energy + Delta-G solvation = -20148.723694 eV Core-core repulsion = 17155.394095 eV Total energy + Delta-G solvation = -2993.329599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81099 -39.75043 -37.45549 -35.39812 -34.89618 -32.42289 -32.03807 -28.37402 -28.27327 -27.92397 -25.54827 -24.05880 -22.55168 -21.29510 -20.15512 -18.84372 -18.45114 -17.61870 -17.20187 -16.57052 -16.40118 -15.74762 -15.29273 -14.84629 -14.62343 -14.37125 -14.12571 -13.89897 -13.64804 -13.29795 -13.19130 -12.96780 -12.87022 -12.83751 -12.79140 -12.61238 -12.42044 -12.22655 -12.17026 -11.95436 -11.55411 -11.39816 -11.34101 -11.26545 -10.91097 -10.51677 -9.59973 -8.17851 -6.29896 1.17142 1.39942 1.44527 1.51771 1.85929 2.41776 3.03030 3.15657 3.73696 3.78462 3.80954 3.85438 3.96304 4.14299 4.37614 4.51044 4.56549 4.60166 4.65586 4.75047 4.77276 4.82472 4.87357 4.89194 4.99358 5.09206 5.12249 5.20383 5.26506 5.29756 5.38301 5.45657 5.47359 5.54678 5.67918 5.89105 6.18874 6.61061 6.87286 7.38135 7.41353 8.94804 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.006161 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.286285 B = 4543.772174 C = 5377.863561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.128 4.128 4 C -0.178 4.178 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.594 6.594 8 N -0.607 5.607 9 C 0.098 3.902 10 C -0.117 4.117 11 C -0.109 4.109 12 C 0.160 3.840 13 H 0.050 0.950 14 C 0.026 3.974 15 C -0.530 4.530 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.257 1.257 21 H -0.287 1.287 22 H -0.269 1.269 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.068 0.932 38 H -0.018 1.018 39 H -0.009 1.009 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.320 12.096 -0.749 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.185 4.185 4 C -0.235 4.235 5 O -0.279 6.279 6 C 0.409 3.591 7 O -0.484 6.484 8 N -0.347 5.347 9 C -0.023 4.023 10 C -0.154 4.154 11 C -0.147 4.147 12 C 0.059 3.941 13 H 0.068 0.932 14 C -0.012 4.012 15 C -0.568 4.568 16 H 0.089 0.911 17 C -0.202 4.202 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.182 1.182 21 H -0.213 1.213 22 H -0.194 1.194 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.001 0.999 39 H 0.009 0.991 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.907 12.067 -1.128 17.705 hybrid contribution -1.138 -0.991 -0.230 1.526 sum 11.769 11.076 -1.358 16.219 Atomic orbital electron populations 1.22470 0.95069 1.02864 1.03429 1.22453 0.93960 0.93288 0.81748 1.21845 1.02599 0.89672 1.04382 1.22449 1.01756 1.01780 0.97486 1.86269 1.71490 1.22641 1.47525 1.17782 0.78745 0.80848 0.81722 1.90922 1.41616 1.71097 1.44809 1.47598 1.57150 1.10741 1.19233 1.22551 0.94692 0.97885 0.87221 1.22818 0.97147 0.92261 1.03185 1.22537 0.97740 1.00129 0.94295 1.21668 0.96952 0.77323 0.98204 0.93199 1.19256 0.91372 0.95933 0.94616 1.21491 0.92805 0.93140 1.49397 0.91067 1.26061 0.95937 1.03330 0.94840 1.70161 0.99045 1.37267 1.51362 0.85434 0.76873 0.78837 0.79479 1.18160 1.21308 1.19367 0.92342 0.88582 0.93638 0.90598 0.87688 0.91252 0.93210 0.88742 0.91377 0.91629 0.88661 0.89303 0.86741 0.89043 0.91346 0.99938 0.99095 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.62 8.37 71.98 0.60 -5.02 16 2 C 0.12 3.46 1.13 -10.79 -0.01 3.45 16 3 C -0.13 -2.33 8.85 71.98 0.64 -1.69 16 4 C -0.18 -4.93 8.37 71.98 0.60 -4.33 16 5 O -0.36 -12.68 9.39 -55.42 -0.52 -13.20 16 6 C 0.65 28.10 7.75 129.79 1.01 29.11 16 7 O -0.59 -30.23 10.70 19.80 0.21 -30.02 16 8 N -0.61 -24.29 3.07 -918.24 -2.82 -27.11 16 9 C 0.10 2.79 6.95 86.85 0.60 3.39 16 10 C -0.12 -2.73 7.08 31.98 0.23 -2.50 16 11 C -0.11 -3.65 5.83 31.78 0.19 -3.46 16 12 C 0.16 7.09 2.89 45.34 0.13 7.22 16 13 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 14 C 0.03 1.50 4.44 29.85 0.13 1.63 16 15 C -0.53 -30.92 8.67 25.60 0.22 -30.70 16 16 H 0.07 3.83 7.56 -2.91 -0.02 3.81 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 18 N -0.94 -60.60 13.29 21.45 0.28 -60.32 16 19 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.04 1.87 5.88 -2.39 -0.01 1.86 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 2.26 7.99 -2.39 -0.02 2.24 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 38 H -0.02 -1.09 8.07 -2.39 -0.02 -1.11 16 39 H -0.01 -0.63 6.60 -2.39 -0.02 -0.65 16 40 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -77.80 318.89 4.98 -72.82 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.99 Total: 13.05 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.80 Total: -2.71 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.53 Total: -87.43 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.31 Total: -43.21 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -77.80 4.98 -72.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084498349.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.074 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds