Wall clock time and date at job start Mon Mar 30 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.30204 * 2 1 4 4 N 1.46900 * 109.47181 * 65.72189 * 3 2 1 5 5 C 1.46906 * 111.00017 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46998 * 184.10762 * 5 4 3 7 7 C 1.50700 * 115.55108 * 301.96894 * 6 5 4 8 8 H 1.08001 * 119.99721 * 99.54953 * 7 6 5 9 9 C 1.37875 * 120.00125 * 279.55531 * 7 6 5 10 10 N 1.31509 * 119.99984 * 356.99256 * 9 7 6 11 11 Si 1.86803 * 119.99934 * 176.99085 * 9 7 6 12 12 H 1.48502 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46827 * 240.00048 * 11 9 7 14 14 H 1.48498 * 109.46937 * 120.00110 * 11 9 7 15 15 C 1.53001 * 117.51801 * 87.66900 * 6 5 4 16 16 C 1.53002 * 117.49923 * 156.30068 * 6 5 4 17 17 C 1.53716 * 110.42722 * 237.77407 * 2 1 3 18 18 C 1.52934 * 112.48828 * 238.25644 * 17 2 1 19 19 C 1.55159 * 108.96401 * 30.09706 * 18 17 2 20 20 S 1.83393 * 110.34367 * 122.17418 * 2 1 3 21 21 H 1.08993 * 109.47598 * 60.69844 * 1 2 3 22 22 H 1.09008 * 109.47115 * 180.70229 * 1 2 3 23 23 H 1.09006 * 109.46934 * 300.69880 * 1 2 3 24 24 H 1.09000 * 109.47523 * 305.72138 * 3 2 1 25 25 H 1.09007 * 109.47363 * 185.72224 * 3 2 1 26 26 H 1.00897 * 110.99492 * 56.04589 * 4 3 2 27 27 H 1.08993 * 109.47138 * 64.10770 * 5 4 3 28 28 H 1.09000 * 109.46805 * 304.10582 * 5 4 3 29 29 H 0.97008 * 120.00125 * 5.84874 * 10 9 7 30 30 H 1.09004 * 117.49733 * 214.96854 * 15 6 5 31 31 H 1.08998 * 117.49970 * 359.97438 * 15 6 5 32 32 H 1.08995 * 117.49592 * 359.97241 * 16 6 5 33 33 H 1.08996 * 117.49972 * 144.97798 * 16 6 5 34 34 H 1.09006 * 108.88413 * 359.04657 * 17 2 1 35 35 H 1.08990 * 108.88650 * 117.45729 * 17 2 1 36 36 H 1.08999 * 109.60541 * 270.16692 * 18 17 2 37 37 H 1.08999 * 109.60577 * 150.02880 * 18 17 2 38 38 H 1.08999 * 111.13029 * 200.65260 * 19 18 17 39 39 H 1.09000 * 111.12814 * 76.47553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 7 1.6967 2.0918 1.2625 5 6 2.1916 3.4745 1.2985 6 6 1.8836 4.0910 2.6644 7 6 0.4283 4.1109 3.0553 8 1 0.0388 3.3583 3.7248 9 6 -0.4058 5.0897 2.5582 10 7 0.0804 6.0403 1.7904 11 14 -2.2265 5.0656 2.9752 12 1 -2.5189 3.9007 3.8486 13 1 -3.0194 4.9572 1.7243 14 1 -2.5886 6.3194 3.6838 15 6 2.9118 3.8890 3.7792 16 6 2.7544 5.2623 3.1234 17 6 2.0665 -0.7682 -1.2186 18 6 2.9673 -1.9387 -0.8220 19 6 2.5079 -2.4842 0.5560 20 16 2.1676 -0.9156 1.4555 21 1 -0.3634 0.5029 -0.8961 22 1 -0.3634 -1.0277 0.0126 23 1 -0.3633 0.5247 0.8837 24 1 1.6242 1.9839 -0.8343 25 1 3.1460 1.4209 -0.1025 26 1 2.0353 1.5661 2.0543 27 1 1.7011 4.0564 0.5183 28 1 3.2689 3.4791 1.1323 29 1 1.0068 6.0064 1.5043 30 1 2.5357 3.7705 4.7954 31 1 3.8078 3.3164 3.5398 32 1 3.5469 5.5934 2.4523 33 1 2.2746 6.0474 3.7077 34 1 1.2232 -1.1509 -1.7936 35 1 2.6352 -0.0819 -1.8458 36 1 4.0006 -1.5984 -0.7546 37 1 2.8931 -2.7273 -1.5707 38 1 3.3041 -3.0498 1.0399 39 1 1.6041 -3.0857 0.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087793673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:37 Heat of formation + Delta-G solvation = 7.981439 kcal Electronic energy + Delta-G solvation = -17437.580082 eV Core-core repulsion = 14892.201515 eV Total energy + Delta-G solvation = -2545.378567 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.84263 -36.83543 -34.29720 -31.73737 -31.35222 -27.00031 -26.41940 -24.69893 -23.50685 -21.88632 -21.09851 -20.17661 -19.15053 -16.65984 -16.10700 -15.68296 -15.07894 -14.60712 -13.90584 -13.74830 -13.65087 -13.61397 -13.11128 -12.85803 -12.40445 -12.24609 -12.05027 -11.70338 -11.55477 -11.12097 -10.93116 -10.89314 -10.72430 -10.69493 -10.56029 -10.33432 -10.02360 -9.62326 -9.36393 -8.50518 -8.37438 -8.07873 -7.62052 -7.50575 -6.17300 -3.88013 1.90147 2.43672 3.52696 3.56493 3.70759 4.35594 4.58647 4.63075 4.70510 4.83383 5.05850 5.14981 5.19031 5.37126 5.45255 5.46151 5.50846 5.65519 5.77039 5.84431 5.91421 5.96395 6.05152 6.11689 6.12876 6.21426 6.37989 6.44688 6.62392 6.64491 6.75351 6.95189 7.33030 7.34808 7.88501 8.14388 8.45071 8.60778 9.05045 9.83743 11.21900 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.006096 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.093841 B = 4592.087971 C = 5066.276157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 C 0.080 3.920 4 N -0.658 5.658 5 C 0.104 3.896 6 C 0.026 3.974 7 C -0.541 4.541 8 H 0.051 0.949 9 C 0.025 3.975 10 N -0.917 5.917 11 Si 1.071 2.929 12 H -0.290 1.290 13 H -0.289 1.289 14 H -0.291 1.291 15 C -0.200 4.200 16 C -0.181 4.181 17 C -0.125 4.125 18 C -0.122 4.122 19 C -0.079 4.079 20 S -0.280 6.280 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.085 0.915 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.339 0.661 27 H 0.066 0.934 28 H -0.004 1.004 29 H 0.272 0.728 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -14.768 -6.481 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.111 4.111 3 C -0.052 4.052 4 N -0.290 5.290 5 C -0.025 4.025 6 C 0.025 3.975 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.179 4.179 10 N -0.553 5.553 11 Si 0.901 3.099 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.218 1.218 15 C -0.237 4.237 16 C -0.220 4.220 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.227 4.227 20 S -0.052 6.052 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.104 0.896 24 H 0.095 0.905 25 H 0.044 0.956 26 H 0.158 0.842 27 H 0.085 0.915 28 H 0.014 0.986 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.061 -13.422 -5.700 14.900 hybrid contribution 2.367 -1.320 -0.894 2.854 sum 5.428 -14.742 -6.594 17.038 Atomic orbital electron populations 1.21921 0.91217 1.01287 1.03925 1.23304 0.99309 0.96687 0.91808 1.21961 0.96789 0.90997 0.95419 1.60319 1.63690 1.02828 1.02158 1.21553 0.93154 0.88291 0.99483 1.19163 0.92995 0.95876 0.89445 1.21164 0.91060 1.15170 1.30529 0.93076 1.25643 1.05158 0.92402 0.94718 1.70671 1.18122 1.32097 1.34384 0.83516 0.75070 0.75355 0.75968 1.21598 1.21606 1.21783 1.22852 1.01201 1.00489 0.99206 1.22770 1.02929 0.91963 1.04290 1.22175 0.99959 0.96835 0.97512 1.22344 1.00537 0.97410 0.95814 1.24314 1.04056 0.97308 0.97024 1.88061 1.84502 1.12650 1.20026 0.92201 0.93143 0.89644 0.90517 0.95626 0.84185 0.91515 0.98558 0.91679 0.90247 0.91925 0.91901 0.89758 0.90837 0.90402 0.90750 0.90572 0.88137 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.28 37.16 0.31 -1.49 16 2 C 0.00 -0.01 0.95 -90.25 -0.09 -0.10 16 3 C 0.08 1.31 4.47 -3.83 -0.02 1.29 16 4 N -0.66 -13.43 5.81 -113.78 -0.66 -14.09 16 5 C 0.10 2.35 5.50 -3.82 -0.02 2.33 16 6 C 0.03 0.65 1.06 -155.66 -0.17 0.48 16 7 C -0.54 -15.17 8.58 -34.44 -0.30 -15.47 16 8 H 0.05 1.49 7.82 -52.49 -0.41 1.07 16 9 C 0.02 0.71 5.44 -17.82 -0.10 0.61 16 10 N -0.92 -27.39 13.54 55.43 0.75 -26.64 16 11 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 C -0.20 -4.52 9.94 -26.73 -0.27 -4.79 16 16 C -0.18 -4.31 8.73 -26.73 -0.23 -4.54 16 17 C -0.13 -1.34 5.74 -26.39 -0.15 -1.49 16 18 C -0.12 -1.13 6.34 -25.62 -0.16 -1.29 16 19 C -0.08 -0.80 7.52 38.30 0.29 -0.52 16 20 S -0.28 -4.12 20.64 -107.50 -2.22 -6.33 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 23 H 0.08 1.49 7.81 -51.93 -0.41 1.09 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.34 7.06 7.19 -39.29 -0.28 6.78 16 27 H 0.07 1.64 7.79 -51.93 -0.40 1.24 16 28 H 0.00 -0.08 8.10 -51.93 -0.42 -0.50 16 29 H 0.27 8.06 6.15 -40.82 -0.25 7.81 16 30 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 34 H 0.07 0.71 7.62 -51.93 -0.40 0.31 16 35 H 0.08 0.79 7.62 -51.93 -0.40 0.40 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -29.84 321.55 -10.10 -39.94 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.84 Total: 6.43 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -0.90 Total: -24.96 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.09 Total: -40.73 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -2.22 Total: -6.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.84 -10.10 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087793673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.923 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds