Wall clock time and date at job start Mon Mar 30 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.30204 * 2 1 4 4 N 1.46900 * 109.47181 * 65.72189 * 3 2 1 5 5 C 1.46906 * 111.00017 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46998 * 184.10762 * 5 4 3 7 7 C 1.50700 * 115.55108 * 301.96894 * 6 5 4 8 8 H 1.08001 * 119.99721 * 99.54953 * 7 6 5 9 9 C 1.37875 * 120.00125 * 279.55531 * 7 6 5 10 10 N 1.31509 * 119.99984 * 356.99256 * 9 7 6 11 11 Si 1.86803 * 119.99934 * 176.99085 * 9 7 6 12 12 H 1.48502 * 109.47196 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.46827 * 240.00048 * 11 9 7 14 14 H 1.48498 * 109.46937 * 120.00110 * 11 9 7 15 15 C 1.53001 * 117.51801 * 87.66900 * 6 5 4 16 16 C 1.53002 * 117.49923 * 156.30068 * 6 5 4 17 17 C 1.53716 * 110.42722 * 237.77407 * 2 1 3 18 18 C 1.52934 * 112.48828 * 238.25644 * 17 2 1 19 19 C 1.55159 * 108.96401 * 30.09706 * 18 17 2 20 20 S 1.83393 * 110.34367 * 122.17418 * 2 1 3 21 21 H 1.08993 * 109.47598 * 60.69844 * 1 2 3 22 22 H 1.09008 * 109.47115 * 180.70229 * 1 2 3 23 23 H 1.09006 * 109.46934 * 300.69880 * 1 2 3 24 24 H 1.09000 * 109.47523 * 305.72138 * 3 2 1 25 25 H 1.09007 * 109.47363 * 185.72224 * 3 2 1 26 26 H 1.00897 * 110.99492 * 56.04589 * 4 3 2 27 27 H 1.08993 * 109.47138 * 64.10770 * 5 4 3 28 28 H 1.09000 * 109.46805 * 304.10582 * 5 4 3 29 29 H 0.97008 * 120.00125 * 5.84874 * 10 9 7 30 30 H 1.09004 * 117.49733 * 214.96854 * 15 6 5 31 31 H 1.08998 * 117.49970 * 359.97438 * 15 6 5 32 32 H 1.08995 * 117.49592 * 359.97241 * 16 6 5 33 33 H 1.08996 * 117.49972 * 144.97798 * 16 6 5 34 34 H 1.09006 * 108.88413 * 359.04657 * 17 2 1 35 35 H 1.08990 * 108.88650 * 117.45729 * 17 2 1 36 36 H 1.08999 * 109.60541 * 270.16692 * 18 17 2 37 37 H 1.08999 * 109.60577 * 150.02880 * 18 17 2 38 38 H 1.08999 * 111.13029 * 200.65260 * 19 18 17 39 39 H 1.09000 * 111.12814 * 76.47553 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0608 1.4349 0.0000 4 7 1.6967 2.0918 1.2625 5 6 2.1916 3.4745 1.2985 6 6 1.8836 4.0910 2.6644 7 6 0.4283 4.1109 3.0553 8 1 0.0388 3.3583 3.7248 9 6 -0.4058 5.0897 2.5582 10 7 0.0804 6.0403 1.7904 11 14 -2.2265 5.0656 2.9752 12 1 -2.5189 3.9007 3.8486 13 1 -3.0194 4.9572 1.7243 14 1 -2.5886 6.3194 3.6838 15 6 2.9118 3.8890 3.7792 16 6 2.7544 5.2623 3.1234 17 6 2.0665 -0.7682 -1.2186 18 6 2.9673 -1.9387 -0.8220 19 6 2.5079 -2.4842 0.5560 20 16 2.1676 -0.9156 1.4555 21 1 -0.3634 0.5029 -0.8961 22 1 -0.3634 -1.0277 0.0126 23 1 -0.3633 0.5247 0.8837 24 1 1.6242 1.9839 -0.8343 25 1 3.1460 1.4209 -0.1025 26 1 2.0353 1.5661 2.0543 27 1 1.7011 4.0564 0.5183 28 1 3.2689 3.4791 1.1323 29 1 1.0068 6.0064 1.5043 30 1 2.5357 3.7705 4.7954 31 1 3.8078 3.3164 3.5398 32 1 3.5469 5.5934 2.4523 33 1 2.2746 6.0474 3.7077 34 1 1.2232 -1.1509 -1.7936 35 1 2.6352 -0.0819 -1.8458 36 1 4.0006 -1.5984 -0.7546 37 1 2.8931 -2.7273 -1.5707 38 1 3.3041 -3.0498 1.0399 39 1 1.6041 -3.0857 0.4589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087793673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:37 Heat of formation + Delta-G solvation = -8.750652 kcal Electronic energy + Delta-G solvation = -17438.305640 eV Core-core repulsion = 14892.201515 eV Total energy + Delta-G solvation = -2546.104125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.36866 -38.26865 -35.61370 -33.87275 -32.54972 -28.20983 -27.69588 -26.77554 -24.93645 -23.18070 -22.77081 -21.48731 -20.85165 -18.57624 -17.29851 -16.85187 -16.45113 -15.85396 -15.63288 -15.46287 -15.23542 -14.75295 -14.38646 -14.25845 -14.17943 -13.49621 -13.37904 -13.29777 -12.74549 -12.64165 -12.50992 -12.34200 -12.24043 -11.97322 -11.93186 -11.87062 -11.54977 -11.22956 -10.67088 -10.58340 -10.35771 -10.14860 -9.16049 -8.69235 -8.43237 -6.13551 0.89634 1.48238 1.54721 1.63391 1.79966 2.62285 3.07298 3.33231 3.40824 3.63982 3.75624 3.88007 4.05545 4.13813 4.18323 4.33419 4.36021 4.46528 4.52047 4.58147 4.64673 4.68526 4.78077 4.79375 4.84276 4.86567 4.95532 5.01083 5.04278 5.07611 5.21408 5.41431 5.42271 5.47848 6.18354 6.28554 6.38390 6.56450 6.82931 7.63669 8.97015 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.006096 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.093841 B = 4592.087971 C = 5066.276157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.009 3.991 3 C 0.080 3.920 4 N -0.671 5.671 5 C 0.119 3.881 6 C -0.002 4.002 7 C -0.547 4.547 8 H 0.032 0.968 9 C -0.020 4.020 10 N -0.939 5.939 11 Si 1.111 2.889 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.283 1.283 15 C -0.179 4.179 16 C -0.180 4.180 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.058 4.058 20 S -0.356 6.356 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.336 0.664 27 H 0.039 0.961 28 H 0.010 0.990 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.474 -16.831 -7.620 19.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.050 4.050 4 N -0.302 5.302 5 C -0.010 4.010 6 C -0.003 4.003 7 C -0.585 4.585 8 H 0.051 0.949 9 C -0.219 4.219 10 N -0.577 5.577 11 Si 0.936 3.064 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.217 4.217 16 C -0.218 4.218 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.206 4.206 20 S -0.130 6.130 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.155 0.845 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.593 -15.501 -6.838 17.319 hybrid contribution 2.245 -0.750 -0.519 2.423 sum 5.838 -16.251 -7.357 18.770 Atomic orbital electron populations 1.21852 0.91807 1.01939 1.02325 1.23239 0.98698 0.95341 0.92784 1.22025 0.97269 0.92423 0.93314 1.60238 1.64196 1.02009 1.03773 1.21235 0.93579 0.89177 0.97031 1.19273 0.92113 0.97472 0.91440 1.21339 0.93022 1.14310 1.29806 0.94949 1.26811 1.08583 0.92121 0.94353 1.70772 1.17835 1.33145 1.35944 0.82985 0.71251 0.75939 0.76250 1.20552 1.20913 1.20949 1.22842 1.01089 0.99522 0.98199 1.22679 1.03023 0.91661 1.04486 1.22189 1.00958 0.97235 0.95852 1.22339 0.99925 0.97508 0.95768 1.24451 1.05145 0.94439 0.96573 1.88311 1.84869 1.16909 1.22870 0.91524 0.91291 0.93476 0.90789 0.94967 0.84454 0.94208 0.97164 0.92601 0.90684 0.89361 0.90058 0.92073 0.89173 0.89777 0.90844 0.87450 0.86662 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 8.28 71.98 0.60 -2.78 16 2 C 0.01 0.24 0.95 -10.55 -0.01 0.23 16 3 C 0.08 2.60 4.47 86.30 0.39 2.99 16 4 N -0.67 -27.61 5.81 -513.89 -2.99 -30.60 16 5 C 0.12 5.43 5.50 86.30 0.47 5.91 16 6 C 0.00 -0.11 1.06 -52.93 -0.06 -0.17 16 7 C -0.55 -31.27 8.58 25.60 0.22 -31.05 16 8 H 0.03 1.92 7.82 -2.91 -0.02 1.90 16 9 C -0.02 -1.16 5.44 84.66 0.46 -0.70 16 10 N -0.94 -57.14 13.54 21.45 0.29 -56.84 16 11 Si 1.11 52.70 29.90 68.60 2.05 54.75 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 15 C -0.18 -7.98 9.94 30.60 0.30 -7.68 16 16 C -0.18 -8.59 8.73 30.60 0.27 -8.32 16 17 C -0.12 -2.24 5.74 30.81 0.18 -2.07 16 18 C -0.12 -1.69 6.34 31.31 0.20 -1.50 16 19 C -0.06 -1.01 7.52 72.72 0.55 -0.46 16 20 S -0.36 -10.14 20.64 -56.49 -1.17 -11.30 16 21 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.05 1.68 7.81 -2.38 -0.02 1.66 16 24 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.34 14.18 7.19 -89.70 -0.65 13.53 16 27 H 0.04 2.00 7.79 -2.39 -0.02 1.99 16 28 H 0.01 0.44 8.10 -2.39 -0.02 0.42 16 29 H 0.26 16.00 6.15 -92.70 -0.57 15.43 16 30 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 31 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.09 1.38 7.62 -2.38 -0.02 1.36 16 35 H 0.08 1.46 7.62 -2.39 -0.02 1.44 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.44 321.55 2.31 -63.13 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.56 Total: 26.47 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 3.56 Total: -45.60 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -2.70 Total: -87.44 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.75 kcal Atomic # 16 Polarization: -10.14 SS G_CDS: -1.17 Total: -11.30 kcal Total: -65.44 2.31 -63.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087793673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.377 kcal (2) G-P(sol) polarization free energy of solvation -65.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds