Wall clock time and date at job start Mon Mar 30 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.35489 * 2 1 4 4 N 1.46896 * 109.47453 * 299.12742 * 3 2 1 5 5 C 1.46901 * 110.99848 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47065 * 185.37331 * 5 4 3 7 7 C 1.50702 * 115.55136 * 294.81221 * 6 5 4 8 8 H 1.07998 * 120.00078 * 95.14851 * 7 6 5 9 9 C 1.37875 * 119.99872 * 275.15074 * 7 6 5 10 10 N 1.31513 * 119.99951 * 5.24514 * 9 7 6 11 11 Si 1.86797 * 119.99950 * 185.24916 * 9 7 6 12 12 H 1.48504 * 109.47053 * 269.99583 * 11 9 7 13 13 H 1.48494 * 109.47197 * 29.99812 * 11 9 7 14 14 H 1.48500 * 109.47275 * 149.99750 * 11 9 7 15 15 C 1.53007 * 117.49806 * 80.47898 * 6 5 4 16 16 C 1.53002 * 117.50196 * 149.13943 * 6 5 4 17 17 C 1.54266 * 110.49947 * 122.39127 * 2 1 3 18 18 C 1.53858 * 108.92510 * 90.89016 * 17 2 1 19 19 C 1.55132 * 106.89874 * 47.25573 * 18 17 2 20 20 S 1.83098 * 110.40124 * 237.68221 * 2 1 3 21 21 H 1.09009 * 109.47193 * 59.29253 * 1 2 3 22 22 H 1.08998 * 109.47258 * 179.29594 * 1 2 3 23 23 H 1.09003 * 109.47075 * 299.29868 * 1 2 3 24 24 H 1.08999 * 109.46773 * 179.12842 * 3 2 1 25 25 H 1.09002 * 109.47315 * 59.13556 * 3 2 1 26 26 H 1.00896 * 111.00207 * 303.95934 * 4 3 2 27 27 H 1.08999 * 109.47287 * 65.37420 * 5 4 3 28 28 H 1.08996 * 109.47606 * 305.37215 * 5 4 3 29 29 H 0.96999 * 119.99916 * 175.00110 * 10 9 7 30 30 H 1.09002 * 117.49659 * 215.00064 * 15 6 5 31 31 H 1.08996 * 117.49733 * 0.02901 * 15 6 5 32 32 H 1.09004 * 117.49357 * 359.97438 * 16 6 5 33 33 H 1.08996 * 117.50301 * 144.97083 * 16 6 5 34 34 H 1.09009 * 109.61162 * 210.80898 * 17 2 1 35 35 H 1.08996 * 109.61252 * 330.97040 * 17 2 1 36 36 H 1.08998 * 109.97399 * 287.89631 * 18 17 2 37 37 H 1.09003 * 109.97445 * 166.61541 * 18 17 2 38 38 H 1.09005 * 110.85750 * 199.70295 * 19 18 17 39 39 H 1.09000 * 110.86023 * 76.06170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 7 1.6005 2.1281 -1.2098 5 6 2.0930 3.5117 -1.2436 6 6 1.4850 4.2402 -2.4439 7 6 1.8965 3.7196 -3.7969 8 1 1.2748 3.0017 -4.3112 9 6 3.0666 4.1598 -4.3782 10 7 3.8748 4.9534 -3.7100 11 14 3.5040 3.6289 -6.1150 12 1 4.2935 2.3722 -6.0644 13 1 2.2588 3.4004 -6.8911 14 1 4.3074 4.6922 -6.7701 15 6 0.0595 4.7765 -2.2969 16 6 1.2447 5.7453 -2.3093 17 6 2.0702 -0.7741 1.2201 18 6 2.2662 -2.2490 0.8286 19 6 3.0155 -2.2593 -0.5297 20 16 2.1683 -0.9175 -1.4503 21 1 -0.3634 0.5248 -0.8836 22 1 -0.3634 -1.0276 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 3.1519 1.4177 0.0156 25 1 1.6943 1.9586 0.8821 26 1 1.8741 1.6261 -2.0411 27 1 3.1793 3.5087 -1.3326 28 1 1.8052 4.0225 -0.3247 29 1 4.7313 5.2046 -4.0898 30 1 -0.5805 4.7527 -3.1788 31 1 -0.4449 4.6107 -1.3450 32 1 1.5194 6.2163 -1.3654 33 1 1.3847 6.3589 -3.1991 34 1 3.0245 -0.3481 1.5305 35 1 1.3575 -0.7053 2.0419 36 1 1.2978 -2.7381 0.7233 37 1 2.8611 -2.7595 1.5860 38 1 2.8892 -3.2166 -1.0354 39 1 4.0718 -2.0283 -0.3920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087793674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:39 Heat of formation + Delta-G solvation = 8.952861 kcal Electronic energy + Delta-G solvation = -17368.799350 eV Core-core repulsion = 14823.462907 eV Total energy + Delta-G solvation = -2545.336443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.69029 -36.54202 -34.15780 -31.84621 -31.21079 -26.72701 -26.41658 -25.24543 -23.49466 -21.59456 -20.85044 -20.14534 -18.91779 -16.24467 -15.94545 -15.63848 -14.78234 -14.52962 -14.42821 -13.86250 -13.62963 -13.33908 -13.23780 -12.71657 -12.25621 -12.10540 -11.70538 -11.54339 -11.40753 -11.21300 -10.92501 -10.86116 -10.80608 -10.70742 -10.57376 -10.35531 -10.05765 -9.53225 -9.32511 -8.68961 -8.34811 -7.99550 -7.51914 -7.35502 -5.95155 -4.00737 1.95442 2.56902 3.34744 3.41213 3.45709 4.44439 4.47798 4.58121 4.80409 4.96156 5.06875 5.26108 5.31110 5.34595 5.51604 5.56892 5.61623 5.71742 5.74509 5.87838 5.96694 6.04571 6.08362 6.18621 6.26772 6.53358 6.58589 6.64617 6.90448 6.91418 6.98555 7.23665 7.59607 7.62896 7.96033 8.05414 8.37204 8.57797 9.02376 9.64920 11.12960 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.006403 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.002801 B = 4372.136410 C = 5126.925920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.008 4.008 3 C 0.079 3.921 4 N -0.677 5.677 5 C 0.107 3.893 6 C 0.051 3.949 7 C -0.490 4.490 8 H 0.059 0.941 9 C 0.070 3.930 10 N -0.882 5.882 11 Si 0.886 3.114 12 H -0.280 1.280 13 H -0.273 1.273 14 H -0.288 1.288 15 C -0.201 4.201 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.084 4.084 20 S -0.271 6.271 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.028 0.972 25 H 0.070 0.930 26 H 0.353 0.647 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.258 0.742 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 -11.966 10.480 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.118 4.118 3 C -0.053 4.053 4 N -0.310 5.310 5 C -0.022 4.022 6 C 0.051 3.949 7 C -0.528 4.528 8 H 0.078 0.922 9 C -0.132 4.132 10 N -0.519 5.519 11 Si 0.714 3.286 12 H -0.207 1.207 13 H -0.198 1.198 14 H -0.214 1.214 15 C -0.238 4.238 16 C -0.200 4.200 17 C -0.164 4.164 18 C -0.163 4.163 19 C -0.233 4.233 20 S -0.044 6.044 21 H 0.099 0.901 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.174 0.826 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.059 -11.433 9.506 15.181 hybrid contribution 1.541 -0.538 0.066 1.633 sum -1.518 -11.971 9.573 15.403 Atomic orbital electron populations 1.21771 0.91313 1.01320 1.03393 1.23404 0.99309 0.96802 0.92300 1.21921 0.96721 0.90786 0.95881 1.60498 1.63034 1.03633 1.03827 1.21411 0.97286 0.87112 0.96361 1.18721 0.91458 0.91016 0.93740 1.20464 1.06820 1.24969 1.00540 0.92249 1.24980 0.96591 0.94387 0.97259 1.69993 1.09189 1.34901 1.37836 0.86686 0.78508 0.78137 0.85316 1.20658 1.19809 1.21351 1.22866 0.92853 1.08461 0.99610 1.22524 1.02516 0.95147 0.99784 1.22476 1.02175 0.94172 0.97578 1.22512 1.00952 0.96915 0.95879 1.24244 1.01741 0.99868 0.97434 1.88001 1.69021 1.31275 1.16091 0.90111 0.92982 0.92348 0.95358 0.91190 0.82643 0.94746 0.94600 0.93216 0.90956 0.91755 0.92289 0.90328 0.90828 0.90020 0.90509 0.90342 0.88441 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.40 37.16 0.31 -1.27 16 2 C -0.01 -0.11 0.87 -89.96 -0.08 -0.19 16 3 C 0.08 1.29 4.61 -3.82 -0.02 1.27 16 4 N -0.68 -13.67 5.80 -113.78 -0.66 -14.33 16 5 C 0.11 2.45 5.54 -3.82 -0.02 2.43 16 6 C 0.05 1.29 1.57 -155.65 -0.24 1.05 16 7 C -0.49 -13.52 8.33 -34.44 -0.29 -13.81 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.07 1.96 5.40 -17.82 -0.10 1.86 16 10 N -0.88 -25.33 12.90 55.43 0.72 -24.61 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 C -0.20 -4.59 9.96 -26.69 -0.27 -4.86 16 16 C -0.16 -3.93 9.42 -26.69 -0.25 -4.18 16 17 C -0.12 -1.33 5.47 -25.62 -0.14 -1.47 16 18 C -0.12 -1.15 6.46 -25.16 -0.16 -1.32 16 19 C -0.08 -0.94 7.38 38.29 0.28 -0.66 16 20 S -0.27 -4.21 20.91 -107.50 -2.25 -6.46 16 21 H 0.08 1.28 7.67 -51.92 -0.40 0.88 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.03 0.49 8.10 -51.93 -0.42 0.07 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.35 7.83 7.07 -39.29 -0.28 7.56 16 27 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 30 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.08 2.04 8.14 -51.93 -0.42 1.61 16 34 H 0.07 0.78 7.83 -51.92 -0.41 0.38 16 35 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -28.68 324.34 -10.25 -38.93 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.95 Total: 6.12 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.97 Total: -21.14 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.06 Total: -38.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -2.25 Total: -6.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.68 -10.25 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087793674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.879 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds