Wall clock time and date at job start Mon Mar 30 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.35489 * 2 1 4 4 N 1.46896 * 109.47453 * 299.12742 * 3 2 1 5 5 C 1.46901 * 110.99848 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47065 * 185.37331 * 5 4 3 7 7 C 1.50702 * 115.55136 * 294.81221 * 6 5 4 8 8 H 1.07998 * 120.00078 * 95.14851 * 7 6 5 9 9 C 1.37875 * 119.99872 * 275.15074 * 7 6 5 10 10 N 1.31513 * 119.99951 * 5.24514 * 9 7 6 11 11 Si 1.86797 * 119.99950 * 185.24916 * 9 7 6 12 12 H 1.48504 * 109.47053 * 269.99583 * 11 9 7 13 13 H 1.48494 * 109.47197 * 29.99812 * 11 9 7 14 14 H 1.48500 * 109.47275 * 149.99750 * 11 9 7 15 15 C 1.53007 * 117.49806 * 80.47898 * 6 5 4 16 16 C 1.53002 * 117.50196 * 149.13943 * 6 5 4 17 17 C 1.54266 * 110.49947 * 122.39127 * 2 1 3 18 18 C 1.53858 * 108.92510 * 90.89016 * 17 2 1 19 19 C 1.55132 * 106.89874 * 47.25573 * 18 17 2 20 20 S 1.83098 * 110.40124 * 237.68221 * 2 1 3 21 21 H 1.09009 * 109.47193 * 59.29253 * 1 2 3 22 22 H 1.08998 * 109.47258 * 179.29594 * 1 2 3 23 23 H 1.09003 * 109.47075 * 299.29868 * 1 2 3 24 24 H 1.08999 * 109.46773 * 179.12842 * 3 2 1 25 25 H 1.09002 * 109.47315 * 59.13556 * 3 2 1 26 26 H 1.00896 * 111.00207 * 303.95934 * 4 3 2 27 27 H 1.08999 * 109.47287 * 65.37420 * 5 4 3 28 28 H 1.08996 * 109.47606 * 305.37215 * 5 4 3 29 29 H 0.96999 * 119.99916 * 175.00110 * 10 9 7 30 30 H 1.09002 * 117.49659 * 215.00064 * 15 6 5 31 31 H 1.08996 * 117.49733 * 0.02901 * 15 6 5 32 32 H 1.09004 * 117.49357 * 359.97438 * 16 6 5 33 33 H 1.08996 * 117.50301 * 144.97083 * 16 6 5 34 34 H 1.09009 * 109.61162 * 210.80898 * 17 2 1 35 35 H 1.08996 * 109.61252 * 330.97040 * 17 2 1 36 36 H 1.08998 * 109.97399 * 287.89631 * 18 17 2 37 37 H 1.09003 * 109.97445 * 166.61541 * 18 17 2 38 38 H 1.09005 * 110.85750 * 199.70295 * 19 18 17 39 39 H 1.09000 * 110.86023 * 76.06170 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4345 0.0000 4 7 1.6005 2.1281 -1.2098 5 6 2.0930 3.5117 -1.2436 6 6 1.4850 4.2402 -2.4439 7 6 1.8965 3.7196 -3.7969 8 1 1.2748 3.0017 -4.3112 9 6 3.0666 4.1598 -4.3782 10 7 3.8748 4.9534 -3.7100 11 14 3.5040 3.6289 -6.1150 12 1 4.2935 2.3722 -6.0644 13 1 2.2588 3.4004 -6.8911 14 1 4.3074 4.6922 -6.7701 15 6 0.0595 4.7765 -2.2969 16 6 1.2447 5.7453 -2.3093 17 6 2.0702 -0.7741 1.2201 18 6 2.2662 -2.2490 0.8286 19 6 3.0155 -2.2593 -0.5297 20 16 2.1683 -0.9175 -1.4503 21 1 -0.3634 0.5248 -0.8836 22 1 -0.3634 -1.0276 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 3.1519 1.4177 0.0156 25 1 1.6943 1.9586 0.8821 26 1 1.8741 1.6261 -2.0411 27 1 3.1793 3.5087 -1.3326 28 1 1.8052 4.0225 -0.3247 29 1 4.7313 5.2046 -4.0898 30 1 -0.5805 4.7527 -3.1788 31 1 -0.4449 4.6107 -1.3450 32 1 1.5194 6.2163 -1.3654 33 1 1.3847 6.3589 -3.1991 34 1 3.0245 -0.3481 1.5305 35 1 1.3575 -0.7053 2.0419 36 1 1.2978 -2.7381 0.7233 37 1 2.8611 -2.7595 1.5860 38 1 2.8892 -3.2166 -1.0354 39 1 4.0718 -2.0283 -0.3920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087793674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:38 Heat of formation + Delta-G solvation = -6.751371 kcal Electronic energy + Delta-G solvation = -17369.480337 eV Core-core repulsion = 14823.462907 eV Total energy + Delta-G solvation = -2546.017430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08753 -38.08459 -35.49955 -33.96631 -32.40836 -28.15807 -27.57488 -27.13655 -24.90301 -22.92311 -22.57494 -21.31575 -20.72004 -17.97957 -17.23083 -16.94485 -16.62648 -16.08328 -15.73627 -15.47609 -15.04426 -14.56470 -14.33804 -14.25312 -13.62170 -13.39700 -13.15634 -13.07412 -12.92787 -12.87082 -12.51736 -12.33074 -12.29636 -12.01722 -11.95952 -11.79508 -11.56232 -11.24670 -10.73813 -10.59971 -10.39370 -9.92416 -9.11838 -8.64690 -8.09124 -6.19516 0.91689 1.38348 1.39870 1.49337 1.57373 2.42210 3.19021 3.23834 3.64615 3.70275 3.89654 4.00298 4.08072 4.13965 4.35552 4.40246 4.60868 4.61871 4.68879 4.71715 4.77187 4.83063 4.92049 4.95106 4.97990 5.03721 5.05774 5.08836 5.10169 5.20998 5.29439 5.49665 5.67887 5.69345 5.80282 6.36312 6.48662 6.61716 6.88709 7.48234 8.98364 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.022612 B = 0.006403 C = 0.005460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.002801 B = 4372.136410 C = 5126.925920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.007 3.993 3 C 0.078 3.922 4 N -0.674 5.674 5 C 0.122 3.878 6 C 0.024 3.976 7 C -0.501 4.501 8 H 0.046 0.954 9 C 0.027 3.973 10 N -0.908 5.908 11 Si 0.942 3.058 12 H -0.279 1.279 13 H -0.271 1.271 14 H -0.283 1.283 15 C -0.177 4.177 16 C -0.165 4.165 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.066 4.066 20 S -0.366 6.366 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.016 0.984 25 H 0.086 0.914 26 H 0.339 0.661 27 H -0.001 1.001 28 H 0.051 0.949 29 H 0.258 0.742 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -13.480 12.215 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.053 4.053 4 N -0.305 5.305 5 C -0.007 4.007 6 C 0.024 3.976 7 C -0.539 4.539 8 H 0.064 0.936 9 C -0.173 4.173 10 N -0.546 5.546 11 Si 0.769 3.231 12 H -0.205 1.205 13 H -0.195 1.195 14 H -0.209 1.209 15 C -0.214 4.214 16 C -0.203 4.203 17 C -0.161 4.161 18 C -0.154 4.154 19 C -0.214 4.214 20 S -0.139 6.139 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.034 0.966 25 H 0.104 0.896 26 H 0.158 0.842 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.612 -12.955 11.251 17.535 hybrid contribution 1.702 -0.095 -0.447 1.763 sum -1.910 -13.051 10.804 17.049 Atomic orbital electron populations 1.21709 0.90800 1.02062 1.02671 1.23387 0.99468 0.94997 0.92446 1.22034 0.96166 0.92570 0.94578 1.60505 1.62764 1.02537 1.04679 1.21139 0.94873 0.88755 0.95962 1.18874 0.93480 0.91645 0.93640 1.20655 1.06770 1.24635 1.01820 0.93580 1.25603 0.96623 0.94631 1.00442 1.70087 1.09440 1.35912 1.39161 0.85795 0.78198 0.77761 0.81391 1.20463 1.19540 1.20875 1.22836 0.91815 1.06145 1.00630 1.22443 1.03766 0.94657 0.99429 1.22504 1.02634 0.94518 0.96406 1.22519 1.01572 0.96149 0.95165 1.24359 1.01410 0.97944 0.97663 1.88323 1.70510 1.34788 1.20297 0.93201 0.91494 0.90579 0.96588 0.89562 0.84173 0.98319 0.93095 0.93279 0.91233 0.89368 0.90911 0.92619 0.90789 0.87637 0.89786 0.87377 0.87056 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 8.40 71.98 0.60 -2.22 16 2 C 0.01 0.18 0.87 -10.36 -0.01 0.17 16 3 C 0.08 2.49 4.61 86.30 0.40 2.89 16 4 N -0.67 -27.39 5.80 -513.89 -2.98 -30.37 16 5 C 0.12 5.64 5.54 86.30 0.48 6.11 16 6 C 0.02 1.23 1.57 -52.92 -0.08 1.15 16 7 C -0.50 -28.22 8.33 25.60 0.21 -28.01 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.03 1.52 5.40 84.65 0.46 1.98 16 10 N -0.91 -53.17 12.90 21.45 0.28 -52.89 16 11 Si 0.94 45.19 29.54 68.60 2.03 47.22 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 15 C -0.18 -7.96 9.96 30.62 0.30 -7.65 16 16 C -0.16 -8.02 9.42 30.62 0.29 -7.73 16 17 C -0.12 -2.18 5.47 31.31 0.17 -2.01 16 18 C -0.12 -1.72 6.46 31.61 0.20 -1.51 16 19 C -0.07 -1.32 7.38 72.71 0.54 -0.79 16 20 S -0.37 -11.33 20.91 -56.49 -1.18 -12.51 16 21 H 0.05 1.55 7.67 -2.38 -0.02 1.53 16 22 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.02 0.55 8.10 -2.39 -0.02 0.53 16 25 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.34 15.56 7.07 -89.70 -0.63 14.92 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 29 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 30 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 32 H 0.07 3.29 8.14 -2.38 -0.02 3.27 16 33 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.07 1.35 7.83 -2.38 -0.02 1.33 16 35 H 0.11 1.45 7.89 -2.39 -0.02 1.43 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -63.11 324.34 2.07 -61.03 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.37 Total: 25.14 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 3.56 Total: -37.62 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.70 Total: -83.26 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -11.33 SS G_CDS: -1.18 Total: -12.51 kcal Total: -63.11 2.07 -61.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087793674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.283 kcal (2) G-P(sol) polarization free energy of solvation -63.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds