Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.45223 * 2 1 4 4 O 1.20823 * 120.00364 * 336.32999 * 3 2 1 5 5 O 1.34230 * 119.99687 * 156.33236 * 3 2 1 6 6 C 1.53034 * 109.46117 * 240.02579 * 2 1 3 7 7 C 1.53116 * 109.27765 * 299.16364 * 6 2 1 8 8 C 1.53123 * 109.16102 * 302.34634 * 7 6 2 9 9 C 1.53040 * 109.27586 * 57.65668 * 8 7 6 10 10 N 1.46842 * 109.52432 * 300.81872 * 9 8 7 11 11 C 1.46898 * 111.00039 * 185.84345 * 10 9 8 12 12 C 1.52998 * 109.47235 * 51.96080 * 11 10 9 13 13 C 1.52998 * 109.46999 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47160 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00384 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47457 * 359.97438 * 18 16 14 20 20 H 1.48509 * 109.46842 * 120.00217 * 18 16 14 21 21 H 1.48507 * 109.46941 * 239.99366 * 18 16 14 22 22 H 1.08998 * 109.47220 * 300.02768 * 1 2 3 23 23 H 1.09000 * 109.47133 * 60.02463 * 1 2 3 24 24 H 1.08991 * 109.47439 * 180.02562 * 1 2 3 25 25 H 0.96697 * 117.00001 * 179.97438 * 5 3 2 26 26 H 1.09001 * 109.50284 * 59.10328 * 6 2 1 27 27 H 1.09003 * 109.49754 * 179.18592 * 6 2 1 28 28 H 1.09003 * 109.52537 * 62.25174 * 7 6 2 29 29 H 1.09004 * 109.52376 * 182.44353 * 7 6 2 30 30 H 1.09006 * 109.50245 * 177.59535 * 8 7 6 31 31 H 1.08994 * 109.50359 * 297.67186 * 8 7 6 32 32 H 1.09006 * 109.45939 * 180.80480 * 9 8 7 33 33 H 1.09003 * 109.46116 * 60.83792 * 9 8 7 34 34 H 1.08995 * 109.46811 * 291.95499 * 11 10 9 35 35 H 1.09004 * 109.46913 * 171.95849 * 11 10 9 36 36 H 1.09004 * 109.46982 * 299.99727 * 12 11 10 37 37 H 1.08997 * 109.47237 * 59.99703 * 12 11 10 38 38 H 1.09004 * 109.46651 * 299.99464 * 13 12 11 39 39 H 1.08997 * 109.47749 * 59.99550 * 13 12 11 40 40 H 0.96998 * 119.99865 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 8 1.3295 2.3098 -0.4201 5 8 3.2593 1.6992 0.4667 6 6 2.0399 -0.7209 -1.2499 7 6 1.5443 -2.1695 -1.2355 8 6 2.0269 -2.8531 0.0468 9 6 1.5173 -2.0704 1.2592 10 7 2.0192 -0.6917 1.1995 11 6 1.6651 0.0507 2.4166 12 6 2.1061 -0.7458 3.6462 13 6 1.7367 0.0271 4.9139 14 6 2.1716 -0.7571 6.1251 15 1 2.6621 -1.7116 6.0028 16 6 1.9434 -0.2562 7.3892 17 7 1.3466 0.9063 7.5380 18 14 2.4820 -1.2286 8.8904 19 1 3.1247 -2.4946 8.4558 20 1 3.4515 -0.4258 9.6786 21 1 1.2973 -1.5384 9.7307 22 1 -0.3633 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8902 24 1 -0.3634 -1.0276 0.0005 25 1 3.5374 2.6251 0.4460 26 1 1.6637 -0.2164 -2.1399 27 1 3.1298 -0.7086 -1.2578 28 1 0.4548 -2.1821 -1.2671 29 1 1.9409 -2.6989 -2.1019 30 1 1.6414 -3.8721 0.0833 31 1 3.1165 -2.8757 0.0592 32 1 1.8712 -2.5464 2.1737 33 1 0.4273 -2.0607 1.2532 34 1 0.5861 0.2015 2.4491 35 1 2.1672 1.0181 2.4111 36 1 1.6040 -1.7133 3.6517 37 1 3.1851 -0.8966 3.6136 38 1 2.2385 0.9947 4.9086 39 1 0.6576 0.1776 4.9463 40 1 1.1858 1.2585 8.4273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127647299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -103.310678 kcal Electronic energy + Delta-G solvation = -20035.926895 eV Core-core repulsion = 17042.969469 eV Total energy + Delta-G solvation = -2992.957426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.99889 -38.82111 -36.08564 -34.90144 -33.05481 -32.28510 -30.65367 -27.73854 -26.45587 -24.66012 -24.28908 -22.20043 -21.05710 -19.86133 -18.77843 -17.92567 -17.00953 -16.22188 -15.79543 -15.12218 -15.01618 -14.64938 -14.41376 -13.97008 -13.45121 -13.30214 -13.16490 -12.87881 -12.27359 -12.18587 -12.14589 -11.68394 -11.57312 -11.40116 -11.16608 -11.10613 -10.86468 -10.70034 -10.58319 -10.49903 -10.28584 -10.13406 -9.57861 -9.33982 -9.03318 -8.33746 -8.11593 -5.98739 -4.00903 2.20445 3.06897 3.31851 3.39281 3.43499 3.86451 4.47237 4.53195 4.69805 4.82811 5.03215 5.08140 5.26131 5.37200 5.40314 5.48249 5.50446 5.57059 5.73908 5.77465 5.77940 5.83498 5.91360 6.00756 6.06085 6.16345 6.28980 6.34448 6.54123 6.69216 6.74667 7.05608 7.21689 7.30554 7.69038 7.83345 7.99679 8.01401 8.44233 9.06439 9.63166 11.12795 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.005050 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.136665 B = 5542.855489 C = 6135.353784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 C 0.497 3.503 4 O -0.522 6.522 5 O -0.494 6.494 6 C -0.103 4.103 7 C -0.118 4.118 8 C -0.118 4.118 9 C 0.044 3.956 10 N -0.515 5.515 11 C 0.046 3.954 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.403 0.597 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -4.240 -18.285 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 C 0.339 3.661 4 O -0.410 6.410 5 O -0.304 6.304 6 C -0.141 4.141 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.083 4.083 10 N -0.240 5.240 11 C -0.081 4.081 12 C -0.143 4.143 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.261 0.739 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.949 -4.303 -18.286 18.809 hybrid contribution -0.485 0.386 1.014 1.189 sum 0.464 -3.917 -17.272 17.716 Atomic orbital electron populations 1.22410 0.93923 1.03263 1.03900 1.20852 0.93940 0.87545 0.94676 1.23273 0.78937 0.91524 0.72396 1.90699 1.57385 1.48384 1.44489 1.84704 1.33571 1.35609 1.76500 1.21590 1.02174 0.95944 0.94405 1.21602 1.00906 0.94653 0.98437 1.21632 1.02014 0.98261 0.93707 1.22305 0.97721 0.88573 0.99715 1.62290 1.58750 1.02186 1.00785 1.22481 0.98322 0.98126 0.89127 1.21721 1.00760 0.98354 0.93505 1.19074 0.96589 0.95463 0.90468 1.21272 1.38163 1.05159 0.90955 0.92604 1.25031 0.95316 0.95033 0.99146 1.69980 1.42723 1.18291 1.22579 0.86545 0.78325 0.80182 0.83002 1.19716 1.21021 1.21077 0.91449 0.90957 0.90386 0.73896 0.91199 0.90103 0.91712 0.91404 0.91426 0.90849 0.88801 0.94339 0.94945 0.90822 0.93100 0.92301 0.96609 0.96866 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 6.98 37.16 0.26 -1.97 16 2 C 0.12 1.60 0.64 -132.76 -0.09 1.52 16 3 C 0.50 7.23 5.89 36.01 0.21 7.44 16 4 O -0.52 -8.63 16.83 -18.75 -0.32 -8.95 16 5 O -0.49 -6.48 12.09 -39.26 -0.47 -6.95 16 6 C -0.10 -1.10 4.87 -26.65 -0.13 -1.23 16 7 C -0.12 -1.08 5.69 -26.61 -0.15 -1.23 16 8 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 9 C 0.04 0.57 4.74 -3.84 -0.02 0.56 16 10 N -0.51 -7.58 4.35 -220.35 -0.96 -8.54 16 11 C 0.05 0.82 4.42 -3.83 -0.02 0.80 16 12 C -0.11 -2.18 4.66 -26.73 -0.12 -2.30 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 15 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H 0.07 0.96 6.47 -51.93 -0.34 0.63 16 23 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16 24 H 0.08 0.87 4.80 -51.93 -0.25 0.62 16 25 H 0.40 3.52 9.10 45.56 0.41 3.93 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.33 5.84 -51.93 -0.30 1.03 16 33 H 0.04 0.49 6.19 -51.93 -0.32 0.17 16 34 H 0.03 0.59 6.29 -51.93 -0.33 0.26 16 35 H 0.07 1.37 6.34 -51.93 -0.33 1.05 16 36 H 0.05 1.01 6.19 -51.93 -0.32 0.68 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -32.45 307.80 -7.61 -40.06 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.45 Total: 0.35 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.77 Total: -10.87 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.22 Total: -35.00 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.79 Total: -15.90 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.45 -7.61 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127647299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.251 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds