Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.45223 * 2 1 4 4 O 1.20823 * 120.00364 * 336.32999 * 3 2 1 5 5 O 1.34230 * 119.99687 * 156.33236 * 3 2 1 6 6 C 1.53034 * 109.46117 * 240.02579 * 2 1 3 7 7 C 1.53116 * 109.27765 * 299.16364 * 6 2 1 8 8 C 1.53123 * 109.16102 * 302.34634 * 7 6 2 9 9 C 1.53040 * 109.27586 * 57.65668 * 8 7 6 10 10 N 1.46842 * 109.52432 * 300.81872 * 9 8 7 11 11 C 1.46898 * 111.00039 * 185.84345 * 10 9 8 12 12 C 1.52998 * 109.47235 * 51.96080 * 11 10 9 13 13 C 1.52998 * 109.46999 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47160 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99683 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00384 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99708 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48489 * 109.47457 * 359.97438 * 18 16 14 20 20 H 1.48509 * 109.46842 * 120.00217 * 18 16 14 21 21 H 1.48507 * 109.46941 * 239.99366 * 18 16 14 22 22 H 1.08998 * 109.47220 * 300.02768 * 1 2 3 23 23 H 1.09000 * 109.47133 * 60.02463 * 1 2 3 24 24 H 1.08991 * 109.47439 * 180.02562 * 1 2 3 25 25 H 0.96697 * 117.00001 * 179.97438 * 5 3 2 26 26 H 1.09001 * 109.50284 * 59.10328 * 6 2 1 27 27 H 1.09003 * 109.49754 * 179.18592 * 6 2 1 28 28 H 1.09003 * 109.52537 * 62.25174 * 7 6 2 29 29 H 1.09004 * 109.52376 * 182.44353 * 7 6 2 30 30 H 1.09006 * 109.50245 * 177.59535 * 8 7 6 31 31 H 1.08994 * 109.50359 * 297.67186 * 8 7 6 32 32 H 1.09006 * 109.45939 * 180.80480 * 9 8 7 33 33 H 1.09003 * 109.46116 * 60.83792 * 9 8 7 34 34 H 1.08995 * 109.46811 * 291.95499 * 11 10 9 35 35 H 1.09004 * 109.46913 * 171.95849 * 11 10 9 36 36 H 1.09004 * 109.46982 * 299.99727 * 12 11 10 37 37 H 1.08997 * 109.47237 * 59.99703 * 12 11 10 38 38 H 1.09004 * 109.46651 * 299.99464 * 13 12 11 39 39 H 1.08997 * 109.47749 * 59.99550 * 13 12 11 40 40 H 0.96998 * 119.99865 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4210 0.0000 4 8 1.3295 2.3098 -0.4201 5 8 3.2593 1.6992 0.4667 6 6 2.0399 -0.7209 -1.2499 7 6 1.5443 -2.1695 -1.2355 8 6 2.0269 -2.8531 0.0468 9 6 1.5173 -2.0704 1.2592 10 7 2.0192 -0.6917 1.1995 11 6 1.6651 0.0507 2.4166 12 6 2.1061 -0.7458 3.6462 13 6 1.7367 0.0271 4.9139 14 6 2.1716 -0.7571 6.1251 15 1 2.6621 -1.7116 6.0028 16 6 1.9434 -0.2562 7.3892 17 7 1.3466 0.9063 7.5380 18 14 2.4820 -1.2286 8.8904 19 1 3.1247 -2.4946 8.4558 20 1 3.4515 -0.4258 9.6786 21 1 1.2973 -1.5384 9.7307 22 1 -0.3633 0.5143 0.8897 23 1 -0.3633 0.5134 -0.8902 24 1 -0.3634 -1.0276 0.0005 25 1 3.5374 2.6251 0.4460 26 1 1.6637 -0.2164 -2.1399 27 1 3.1298 -0.7086 -1.2578 28 1 0.4548 -2.1821 -1.2671 29 1 1.9409 -2.6989 -2.1019 30 1 1.6414 -3.8721 0.0833 31 1 3.1165 -2.8757 0.0592 32 1 1.8712 -2.5464 2.1737 33 1 0.4273 -2.0607 1.2532 34 1 0.5861 0.2015 2.4491 35 1 2.1672 1.0181 2.4111 36 1 1.6040 -1.7133 3.6517 37 1 3.1851 -0.8966 3.6136 38 1 2.2385 0.9947 4.9086 39 1 0.6576 0.1776 4.9463 40 1 1.1858 1.2585 8.4273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127647299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -125.298700 kcal Electronic energy + Delta-G solvation = -20036.880368 eV Core-core repulsion = 17042.969469 eV Total energy + Delta-G solvation = -2993.910899 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.10155 -39.92729 -37.22891 -36.45580 -34.78492 -33.40173 -32.28332 -28.92304 -28.03635 -25.93431 -25.45135 -23.87870 -22.03421 -21.50061 -19.79201 -19.06764 -18.53345 -17.97675 -16.92713 -16.52871 -16.37947 -16.10109 -15.76786 -14.99106 -14.75701 -14.50749 -14.33628 -14.10226 -13.79578 -13.59840 -13.31027 -13.14638 -12.99535 -12.71007 -12.62801 -12.43277 -12.29065 -12.16697 -12.04525 -11.67229 -11.45181 -11.39595 -11.21045 -11.15423 -10.95298 -10.55653 -9.30747 -8.20384 -6.31634 1.06818 1.40500 1.40852 1.54547 2.06603 2.40795 2.71828 3.13127 3.59230 3.72438 3.94557 4.07528 4.16101 4.20080 4.32431 4.35841 4.50064 4.52007 4.56755 4.67194 4.78505 4.87102 4.93200 4.99257 5.03942 5.06058 5.13516 5.17864 5.24041 5.34394 5.49445 5.50331 5.54891 5.72011 5.84338 5.96189 6.07374 6.25019 6.85451 6.96490 7.37979 8.92028 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027603 B = 0.005050 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.136665 B = 5542.855489 C = 6135.353784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 C 0.494 3.506 4 O -0.547 6.547 5 O -0.499 6.499 6 C -0.100 4.100 7 C -0.114 4.114 8 C -0.112 4.112 9 C 0.038 3.962 10 N -0.515 5.515 11 C 0.059 3.941 12 C -0.088 4.088 13 C 0.026 3.974 14 C -0.539 4.539 15 H 0.062 0.938 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.967 3.033 19 H -0.260 1.260 20 H -0.279 1.279 21 H -0.278 1.278 22 H 0.043 0.957 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.420 0.580 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.025 0.975 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.055 0.945 38 H -0.013 1.013 39 H -0.012 1.012 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -6.268 -19.297 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.026 3.974 3 C 0.337 3.663 4 O -0.438 6.438 5 O -0.310 6.310 6 C -0.137 4.137 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.089 4.089 10 N -0.241 5.241 11 C -0.069 4.069 12 C -0.125 4.125 13 C -0.012 4.012 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.183 1.183 20 H -0.205 1.205 21 H -0.204 1.204 22 H 0.062 0.938 23 H 0.097 0.903 24 H 0.114 0.886 25 H 0.281 0.719 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.005 0.995 39 H 0.006 0.994 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.452 -6.338 -19.315 20.380 hybrid contribution -0.623 1.075 1.316 1.809 sum 0.829 -5.264 -17.999 18.771 Atomic orbital electron populations 1.22392 0.93521 1.04134 1.03036 1.21057 0.94311 0.87010 0.95041 1.23627 0.78941 0.91976 0.71739 1.90683 1.58039 1.49223 1.45815 1.84667 1.33030 1.37315 1.76010 1.21634 1.02091 0.96878 0.93144 1.21618 1.01459 0.93389 0.98645 1.21614 1.01790 0.98871 0.92722 1.22421 0.98038 0.87581 1.00812 1.62240 1.59094 1.02828 0.99907 1.22155 0.97510 0.97449 0.89774 1.21445 1.00519 0.98296 0.92284 1.18973 0.94503 0.94763 0.92975 1.21700 1.38280 1.05633 0.92056 0.91943 1.26015 0.95161 0.96059 1.02747 1.70117 1.43828 1.20093 1.23604 0.85369 0.78057 0.78921 0.78521 1.18336 1.20451 1.20386 0.93824 0.90275 0.88608 0.71946 0.89900 0.90277 0.90909 0.88976 0.89388 0.91220 0.90226 0.93977 0.95730 0.92181 0.92042 0.92589 0.99451 0.99401 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 6.98 71.98 0.50 -3.68 16 2 C 0.12 2.96 0.64 2.80 0.00 2.96 16 3 C 0.49 14.23 5.89 71.24 0.42 14.65 16 4 O -0.55 -18.13 16.83 21.97 0.37 -17.76 16 5 O -0.50 -12.95 12.09 -51.41 -0.62 -13.57 16 6 C -0.10 -1.86 4.87 30.64 0.15 -1.72 16 7 C -0.11 -1.66 5.69 30.67 0.17 -1.48 16 8 C -0.11 -1.96 6.09 30.65 0.19 -1.77 16 9 C 0.04 0.94 4.74 86.33 0.41 1.35 16 10 N -0.52 -14.78 4.35 -851.06 -3.70 -18.49 16 11 C 0.06 2.12 4.42 86.30 0.38 2.51 16 12 C -0.09 -3.67 4.66 30.59 0.14 -3.53 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 18 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H 0.04 1.26 6.47 -2.39 -0.02 1.24 16 23 H 0.08 1.80 7.88 -2.39 -0.02 1.78 16 24 H 0.10 1.94 4.80 -2.39 -0.01 1.93 16 25 H 0.42 7.26 9.10 -74.06 -0.67 6.59 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 0.98 6.56 -2.39 -0.02 0.97 16 29 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.17 5.84 -2.38 -0.01 2.15 16 33 H 0.04 1.00 6.19 -2.39 -0.01 0.99 16 34 H 0.02 0.92 6.29 -2.39 -0.02 0.91 16 35 H 0.06 2.32 6.34 -2.39 -0.02 2.30 16 36 H 0.06 2.43 6.19 -2.39 -0.01 2.42 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -70.44 307.80 1.93 -68.51 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.36 Total: 12.03 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.21 Total: -19.68 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -3.42 Total: -76.14 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.25 Total: -31.32 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.44 1.93 -68.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127647299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.788 kcal (2) G-P(sol) polarization free energy of solvation -70.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds