Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.45711 * 2 1 4 4 O 1.20827 * 119.99598 * 25.02351 * 3 2 1 5 5 O 1.34225 * 120.00590 * 205.02708 * 3 2 1 6 6 C 1.53031 * 109.46432 * 119.97409 * 2 1 3 7 7 C 1.53122 * 109.27971 * 60.83795 * 6 2 1 8 8 C 1.53116 * 109.16156 * 57.65190 * 7 6 2 9 9 C 1.53034 * 109.27904 * 302.35179 * 8 7 6 10 10 N 1.46845 * 109.52480 * 59.17684 * 9 8 7 11 11 C 1.46907 * 110.99902 * 174.16019 * 10 9 8 12 12 C 1.52996 * 109.47007 * 294.21019 * 11 10 9 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09000 * 109.47440 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47217 * 299.97292 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.97084 * 1 2 3 25 25 H 0.96702 * 117.00191 * 180.02562 * 5 3 2 26 26 H 1.09000 * 109.50916 * 180.77707 * 6 2 1 27 27 H 1.09004 * 109.50612 * 300.90016 * 6 2 1 28 28 H 1.08998 * 109.52578 * 177.56369 * 7 6 2 29 29 H 1.09001 * 109.51998 * 297.68711 * 7 6 2 30 30 H 1.09001 * 109.49995 * 62.28804 * 8 7 6 31 31 H 1.08996 * 109.50727 * 182.36881 * 8 7 6 32 32 H 1.09007 * 109.46462 * 299.15775 * 9 8 7 33 33 H 1.09000 * 109.46129 * 179.19598 * 9 8 7 34 34 H 1.09000 * 109.46801 * 174.20896 * 11 10 9 35 35 H 1.09002 * 109.46963 * 54.20809 * 11 10 9 36 36 H 1.09000 * 109.47441 * 60.00268 * 12 11 10 37 37 H 1.09002 * 109.47087 * 299.99714 * 12 11 10 38 38 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 39 39 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4209 0.0000 4 8 1.3391 2.3064 0.4426 5 8 3.2486 1.7030 -0.4917 6 6 2.0399 -0.7209 1.2499 7 6 1.5443 -2.1696 1.2355 8 6 2.0269 -2.8532 -0.0468 9 6 1.5174 -2.0704 -1.2591 10 7 2.0193 -0.6917 -1.1994 11 6 1.6651 0.0507 -2.4166 12 6 2.3961 -0.5570 -3.6154 13 6 2.0277 0.2165 -4.8830 14 6 2.7481 -0.3816 -6.0638 15 1 3.4036 -1.2286 -5.9240 16 6 2.5705 0.1523 -7.3225 17 7 1.7728 1.1840 -7.4926 18 14 3.4642 -0.5887 -8.7859 19 1 4.7769 0.0841 -8.9570 20 1 3.6781 -2.0396 -8.5525 21 1 2.6477 -0.3997 -10.0120 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8897 25 1 3.5271 2.6288 -0.4699 26 1 3.1298 -0.7092 1.2576 27 1 1.6637 -0.2164 2.1399 28 1 1.9409 -2.6989 2.1019 29 1 0.4549 -2.1822 1.2683 30 1 3.1166 -2.8750 -0.0595 31 1 1.6420 -3.8723 -0.0830 32 1 0.4274 -2.0607 -1.2533 33 1 1.8712 -2.5465 -2.1736 34 1 1.9578 1.0945 -2.3035 35 1 0.5889 -0.0095 -2.5786 36 1 2.1034 -1.6009 -3.7284 37 1 3.4723 -0.4969 -3.4534 38 1 2.3207 1.2603 -4.7698 39 1 0.9514 0.1568 -5.0452 40 1 1.3091 1.5689 -6.7326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127647534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -109.258610 kcal Electronic energy + Delta-G solvation = -20072.332686 eV Core-core repulsion = 17079.117338 eV Total energy + Delta-G solvation = -2993.215348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05900 -38.85375 -36.13306 -35.02834 -33.28156 -32.33028 -30.62700 -27.75184 -26.21992 -24.67850 -24.08217 -22.29138 -21.09343 -20.18089 -18.86787 -18.00249 -17.13759 -16.51540 -15.91196 -15.18537 -15.01770 -14.73024 -14.04230 -13.71630 -13.57565 -13.35018 -13.21225 -13.02244 -12.76072 -12.24831 -12.20414 -11.68219 -11.53338 -11.46636 -11.23075 -11.14568 -10.90203 -10.74567 -10.59089 -10.37506 -10.23619 -10.10336 -9.70497 -9.68138 -8.51235 -8.29220 -8.20740 -6.32887 -4.01442 2.15318 3.01709 3.45586 3.49242 3.64949 3.77781 4.46834 4.57420 4.63917 4.76813 4.96711 5.01530 5.19810 5.32483 5.41379 5.42801 5.44424 5.50337 5.64333 5.71408 5.73920 5.76660 5.84577 5.94306 5.98279 6.07695 6.19002 6.26897 6.49572 6.57447 6.61877 6.95641 7.12225 7.19916 7.45647 7.58564 7.95139 8.26353 8.50708 8.92319 9.70951 11.07759 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.005067 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.424755 B = 5524.866758 C = 6075.578459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 C 0.496 3.504 4 O -0.522 6.522 5 O -0.493 6.493 6 C -0.104 4.104 7 C -0.118 4.118 8 C -0.118 4.118 9 C 0.047 3.953 10 N -0.514 5.514 11 C 0.050 3.950 12 C -0.093 4.093 13 C 0.009 3.991 14 C -0.598 4.598 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.285 1.285 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.404 0.596 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.006 0.994 39 H 0.004 0.996 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -5.426 18.534 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 C 0.338 3.662 4 O -0.410 6.410 5 O -0.303 6.303 6 C -0.141 4.141 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.080 4.080 10 N -0.240 5.240 11 C -0.077 4.077 12 C -0.131 4.131 13 C -0.029 4.029 14 C -0.637 4.637 15 H 0.067 0.933 16 C -0.190 4.190 17 N -0.552 5.552 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.211 1.211 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.262 0.738 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.022 0.978 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.158 -5.474 17.037 17.895 hybrid contribution -0.943 0.674 1.599 1.975 sum -0.785 -4.800 18.636 19.260 Atomic orbital electron populations 1.22412 0.93899 1.03250 1.03864 1.20879 0.93944 0.87554 0.94652 1.23253 0.78861 0.91470 0.72602 1.90702 1.57428 1.48571 1.44310 1.84714 1.34365 1.35676 1.75520 1.21596 1.02228 0.95934 0.94384 1.21599 1.00901 0.94646 0.98436 1.21620 1.02100 0.98243 0.93619 1.22250 0.97608 0.88478 0.99678 1.62248 1.58850 1.02158 1.00718 1.22432 0.97972 0.97767 0.89496 1.21485 0.99728 0.99067 0.92849 1.19206 0.96031 0.95248 0.92409 1.22068 1.29953 1.17844 0.93810 0.93260 1.25857 0.96848 0.95596 1.00736 1.70754 1.27439 1.22173 1.34823 0.83511 0.75832 0.75246 0.75402 1.21461 1.21494 1.21060 0.90365 0.90857 0.91684 0.73828 0.90062 0.91101 0.91307 0.91707 0.90767 0.91353 0.94364 0.89238 0.91357 0.95059 0.93143 0.92130 0.97612 0.97823 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 6.99 37.16 0.26 -1.91 16 2 C 0.12 1.59 0.64 -132.77 -0.09 1.50 16 3 C 0.50 7.24 5.70 36.01 0.21 7.45 16 4 O -0.52 -8.62 16.85 -18.75 -0.32 -8.93 16 5 O -0.49 -6.62 12.14 -39.24 -0.48 -7.10 16 6 C -0.10 -1.09 4.87 -26.65 -0.13 -1.22 16 7 C -0.12 -1.06 5.69 -26.61 -0.15 -1.21 16 8 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 9 C 0.05 0.61 4.99 -3.84 -0.02 0.59 16 10 N -0.51 -7.56 4.24 -220.35 -0.93 -8.49 16 11 C 0.05 0.89 4.10 -3.82 -0.02 0.87 16 12 C -0.09 -1.96 5.08 -26.73 -0.14 -2.10 16 13 C 0.01 0.22 4.28 -27.88 -0.12 0.11 16 14 C -0.60 -17.36 9.11 -34.44 -0.31 -17.67 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 17 N -0.92 -28.57 13.65 55.43 0.76 -27.81 16 18 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H 0.08 0.85 4.80 -51.93 -0.25 0.60 16 23 H 0.07 0.87 7.87 -51.93 -0.41 0.46 16 24 H 0.06 0.91 6.77 -51.93 -0.35 0.55 16 25 H 0.40 3.67 9.10 45.56 0.41 4.09 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.47 6.19 -51.93 -0.32 0.15 16 33 H 0.09 1.26 6.21 -51.93 -0.32 0.93 16 34 H 0.07 1.27 5.93 -51.93 -0.31 0.96 16 35 H 0.03 0.56 6.95 -51.93 -0.36 0.20 16 36 H 0.05 1.03 6.43 -51.93 -0.33 0.70 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 39 H 0.00 0.10 8.01 -51.93 -0.42 -0.32 16 40 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -33.35 307.77 -7.63 -40.98 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.45 Total: 0.77 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.77 Total: -14.66 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.18 Total: -36.31 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.79 Total: -16.03 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.35 -7.63 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127647534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.280 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds