Wall clock time and date at job start Mon Mar 30 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.45711 * 2 1 4 4 O 1.20827 * 119.99598 * 25.02351 * 3 2 1 5 5 O 1.34225 * 120.00590 * 205.02708 * 3 2 1 6 6 C 1.53031 * 109.46432 * 119.97409 * 2 1 3 7 7 C 1.53122 * 109.27971 * 60.83795 * 6 2 1 8 8 C 1.53116 * 109.16156 * 57.65190 * 7 6 2 9 9 C 1.53034 * 109.27904 * 302.35179 * 8 7 6 10 10 N 1.46845 * 109.52480 * 59.17684 * 9 8 7 11 11 C 1.46907 * 110.99902 * 174.16019 * 10 9 8 12 12 C 1.52996 * 109.47007 * 294.21019 * 11 10 9 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09000 * 109.47440 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47217 * 299.97292 * 1 2 3 24 24 H 1.09001 * 109.46957 * 59.97084 * 1 2 3 25 25 H 0.96702 * 117.00191 * 180.02562 * 5 3 2 26 26 H 1.09000 * 109.50916 * 180.77707 * 6 2 1 27 27 H 1.09004 * 109.50612 * 300.90016 * 6 2 1 28 28 H 1.08998 * 109.52578 * 177.56369 * 7 6 2 29 29 H 1.09001 * 109.51998 * 297.68711 * 7 6 2 30 30 H 1.09001 * 109.49995 * 62.28804 * 8 7 6 31 31 H 1.08996 * 109.50727 * 182.36881 * 8 7 6 32 32 H 1.09007 * 109.46462 * 299.15775 * 9 8 7 33 33 H 1.09000 * 109.46129 * 179.19598 * 9 8 7 34 34 H 1.09000 * 109.46801 * 174.20896 * 11 10 9 35 35 H 1.09002 * 109.46963 * 54.20809 * 11 10 9 36 36 H 1.09000 * 109.47441 * 60.00268 * 12 11 10 37 37 H 1.09002 * 109.47087 * 299.99714 * 12 11 10 38 38 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 39 39 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0319 1.4209 0.0000 4 8 1.3391 2.3064 0.4426 5 8 3.2486 1.7030 -0.4917 6 6 2.0399 -0.7209 1.2499 7 6 1.5443 -2.1696 1.2355 8 6 2.0269 -2.8532 -0.0468 9 6 1.5174 -2.0704 -1.2591 10 7 2.0193 -0.6917 -1.1994 11 6 1.6651 0.0507 -2.4166 12 6 2.3961 -0.5570 -3.6154 13 6 2.0277 0.2165 -4.8830 14 6 2.7481 -0.3816 -6.0638 15 1 3.4036 -1.2286 -5.9240 16 6 2.5705 0.1523 -7.3225 17 7 1.7728 1.1840 -7.4926 18 14 3.4642 -0.5887 -8.7859 19 1 4.7769 0.0841 -8.9570 20 1 3.6781 -2.0396 -8.5525 21 1 2.6477 -0.3997 -10.0120 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5134 0.8902 24 1 -0.3633 0.5143 -0.8897 25 1 3.5271 2.6288 -0.4699 26 1 3.1298 -0.7092 1.2576 27 1 1.6637 -0.2164 2.1399 28 1 1.9409 -2.6989 2.1019 29 1 0.4549 -2.1822 1.2683 30 1 3.1166 -2.8750 -0.0595 31 1 1.6420 -3.8723 -0.0830 32 1 0.4274 -2.0607 -1.2533 33 1 1.8712 -2.5465 -2.1736 34 1 1.9578 1.0945 -2.3035 35 1 0.5889 -0.0095 -2.5786 36 1 2.1034 -1.6009 -3.7284 37 1 3.4723 -0.4969 -3.4534 38 1 2.3207 1.2603 -4.7698 39 1 0.9514 0.1568 -5.0452 40 1 1.3091 1.5689 -6.7326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127647534.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:39 Heat of formation + Delta-G solvation = -131.917528 kcal Electronic energy + Delta-G solvation = -20073.315250 eV Core-core repulsion = 17079.117338 eV Total energy + Delta-G solvation = -2994.197912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.15969 -39.95475 -37.29518 -36.68981 -34.95776 -33.40246 -32.25699 -28.87598 -27.81140 -25.87641 -25.41565 -24.03168 -22.08902 -21.81792 -19.86030 -19.22161 -18.85666 -18.03304 -17.05807 -16.38466 -16.19925 -15.90954 -15.63857 -15.16566 -14.99896 -14.80575 -14.34396 -14.30835 -13.85402 -13.56794 -13.31335 -13.19260 -13.05772 -12.71795 -12.59542 -12.41228 -12.23150 -12.10278 -11.95808 -11.77755 -11.72069 -11.42821 -11.22877 -11.18298 -10.66369 -10.54859 -9.39005 -8.70153 -6.40448 1.01558 1.52482 1.62093 1.79905 2.01051 2.55191 2.64384 3.15264 3.53983 3.66726 3.85016 4.01001 4.08588 4.14471 4.26583 4.29334 4.43066 4.46447 4.50589 4.57375 4.68827 4.77818 4.84042 4.88763 4.95762 4.96902 4.99333 5.06592 5.19153 5.26771 5.40255 5.44276 5.48040 5.52437 5.87890 6.00215 6.01643 6.17906 6.56441 6.91049 7.42193 8.70485 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.027677 B = 0.005067 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.424755 B = 5524.866758 C = 6075.578459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 C 0.493 3.507 4 O -0.547 6.547 5 O -0.500 6.500 6 C -0.100 4.100 7 C -0.113 4.113 8 C -0.112 4.112 9 C 0.041 3.959 10 N -0.517 5.517 11 C 0.064 3.936 12 C -0.077 4.077 13 C 0.010 3.990 14 C -0.616 4.616 15 H 0.052 0.948 16 C -0.041 4.041 17 N -0.939 5.939 18 Si 1.122 2.878 19 H -0.272 1.272 20 H -0.267 1.267 21 H -0.283 1.283 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.420 0.580 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.053 0.947 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.296 -7.315 19.697 21.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 C 0.336 3.664 4 O -0.437 6.437 5 O -0.311 6.311 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.085 4.085 10 N -0.242 5.242 11 C -0.064 4.064 12 C -0.115 4.115 13 C -0.028 4.028 14 C -0.654 4.654 15 H 0.071 0.929 16 C -0.238 4.238 17 N -0.577 5.577 18 Si 0.942 3.058 19 H -0.198 1.198 20 H -0.191 1.191 21 H -0.208 1.208 22 H 0.115 0.885 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.280 0.720 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.111 0.889 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.002 0.998 39 H 0.004 0.996 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.729 -7.364 18.234 19.679 hybrid contribution -1.108 1.301 1.269 2.128 sum -0.379 -6.063 19.503 20.428 Atomic orbital electron populations 1.22399 0.93303 1.04225 1.03087 1.21085 0.94444 0.86896 0.94959 1.23638 0.78785 0.91993 0.71943 1.90686 1.58037 1.49402 1.45570 1.84681 1.33991 1.37326 1.75115 1.21644 1.02065 0.96949 0.93151 1.21615 1.01535 0.93296 0.98613 1.21606 1.01776 0.98918 0.92676 1.22377 0.98079 0.87398 1.00694 1.62178 1.59319 1.02864 0.99858 1.22088 0.97049 0.97240 0.90010 1.21219 0.99508 0.98766 0.91959 1.19148 0.94553 0.94606 0.94461 1.22500 1.29981 1.17930 0.94959 0.92938 1.27512 0.96747 0.95160 1.04365 1.70898 1.28927 1.23651 1.34216 0.82888 0.75203 0.75795 0.71869 1.19763 1.19127 1.20810 0.88471 0.90183 0.93898 0.71961 0.90385 0.89793 0.88908 0.90759 0.91312 0.89236 0.93734 0.90761 0.92605 0.95511 0.92461 0.92829 0.99806 0.99625 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 6.99 71.98 0.50 -3.53 16 2 C 0.12 2.93 0.64 2.80 0.00 2.93 16 3 C 0.49 14.21 5.70 71.24 0.41 14.62 16 4 O -0.55 -17.99 16.85 21.96 0.37 -17.62 16 5 O -0.50 -13.30 12.14 -51.37 -0.62 -13.92 16 6 C -0.10 -1.86 4.87 30.65 0.15 -1.71 16 7 C -0.11 -1.60 5.69 30.67 0.17 -1.43 16 8 C -0.11 -1.92 6.09 30.64 0.19 -1.73 16 9 C 0.04 0.99 4.99 86.32 0.43 1.43 16 10 N -0.52 -14.74 4.24 -851.06 -3.61 -18.35 16 11 C 0.06 2.29 4.10 86.30 0.35 2.65 16 12 C -0.08 -3.27 5.08 30.59 0.16 -3.11 16 13 C 0.01 0.53 4.28 29.85 0.13 0.66 16 14 C -0.62 -36.12 9.11 25.60 0.23 -35.88 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 16 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 17 N -0.94 -59.78 13.65 21.45 0.29 -59.49 16 18 Si 1.12 51.03 29.90 68.60 2.05 53.08 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H 0.10 1.87 4.80 -2.39 -0.01 1.86 16 23 H 0.08 1.77 7.87 -2.39 -0.02 1.75 16 24 H 0.04 1.19 6.77 -2.39 -0.02 1.17 16 25 H 0.42 7.60 9.10 -74.06 -0.67 6.93 16 26 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 6.56 -2.39 -0.02 0.93 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.01 6.19 -2.38 -0.01 1.00 16 33 H 0.07 2.00 6.21 -2.39 -0.01 1.99 16 34 H 0.06 2.13 5.93 -2.39 -0.01 2.12 16 35 H 0.03 0.98 6.95 -2.39 -0.02 0.96 16 36 H 0.06 2.35 6.43 -2.39 -0.02 2.33 16 37 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 38 H -0.02 -0.95 8.01 -2.39 -0.02 -0.96 16 39 H -0.01 -0.83 8.01 -2.38 -0.02 -0.85 16 40 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 Total: -1.00 -72.36 307.77 2.13 -70.23 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.46 Total: 13.15 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 3.18 Total: -27.08 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -3.31 Total: -77.84 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.25 Total: -31.54 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -72.36 2.13 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127647534.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.692 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds