Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.53004 * 109.47071 * 240.00034 * 2 1 3 5 5 O 1.45197 * 109.47083 * 120.00358 * 2 1 3 6 6 C 1.34637 * 117.00272 * 59.99889 * 5 2 1 7 7 O 1.21501 * 120.00122 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99900 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99809 * 185.26108 * 8 6 5 10 10 C 1.50697 * 110.43328 * 297.94850 * 9 8 6 11 11 H 1.08000 * 120.00089 * 122.57837 * 10 9 8 12 12 C 1.37876 * 119.99956 * 302.57439 * 10 9 8 13 13 N 1.31517 * 119.99762 * 355.00672 * 12 10 9 14 14 Si 1.86799 * 119.99878 * 175.00575 * 12 10 9 15 15 H 1.48495 * 109.47083 * 60.00524 * 14 12 10 16 16 H 1.48502 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47117 * 300.00039 * 14 12 10 18 18 C 1.54892 * 110.48615 * 60.63258 * 9 8 6 19 19 C 1.54886 * 102.75042 * 80.73437 * 18 9 8 20 20 C 1.54261 * 104.19599 * 37.94352 * 19 18 9 21 21 C 1.53876 * 106.60062 * 336.38780 * 20 19 18 22 22 H 1.08998 * 109.47012 * 300.00020 * 1 2 3 23 23 H 1.08999 * 109.47472 * 59.99898 * 1 2 3 24 24 H 1.08998 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47366 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46883 * 300.00462 * 3 2 1 27 27 H 1.09002 * 109.46839 * 59.99531 * 3 2 1 28 28 H 1.08998 * 109.47132 * 299.99863 * 4 2 1 29 29 H 1.08995 * 109.47192 * 60.00153 * 4 2 1 30 30 H 1.09001 * 109.47268 * 179.97438 * 4 2 1 31 31 H 0.96998 * 120.00152 * 5.25348 * 8 6 5 32 32 H 0.96999 * 119.99424 * 184.99469 * 13 12 10 33 33 H 1.09009 * 110.75493 * 322.41764 * 18 9 8 34 34 H 1.09002 * 110.75702 * 199.05177 * 18 9 8 35 35 H 1.08998 * 110.48711 * 279.26193 * 19 18 9 36 36 H 1.09005 * 110.48462 * 156.61870 * 19 18 9 37 37 H 1.09004 * 110.03226 * 95.67379 * 20 19 18 38 38 H 1.09004 * 110.03614 * 217.05853 * 20 19 18 39 39 H 1.08997 * 110.03467 * 119.27952 * 21 20 19 40 40 H 1.08997 * 110.03610 * 240.72166 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.7712 -4.0961 2.5270 10 6 0.2820 -4.3237 2.5661 11 1 -0.1866 -4.9596 1.8296 12 6 -0.4822 -3.7202 3.5422 13 7 0.0985 -3.0261 4.4965 14 14 -2.3423 -3.8883 3.5090 15 1 -2.7113 -5.3237 3.6011 16 1 -2.9264 -3.1519 4.6587 17 1 -2.8680 -3.3223 2.2407 18 6 2.4106 -4.8739 1.3500 19 6 3.8826 -5.0327 1.8048 20 6 3.7841 -5.2868 3.3232 21 6 2.4416 -4.6913 3.7824 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2495 31 1 2.5619 -2.2172 3.1207 32 1 -0.4316 -2.6625 5.2229 33 1 2.3515 -4.2960 0.4276 34 1 1.9368 -5.8479 1.2279 35 1 4.4439 -4.1197 1.6065 36 1 4.3467 -5.8831 1.3051 37 1 3.8059 -6.3579 3.5247 38 1 4.6081 -4.7934 3.8387 39 1 1.8119 -5.4732 4.2067 40 1 2.6136 -3.9080 4.5206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140038200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -97.653202 kcal Electronic energy + Delta-G solvation = -20881.994730 eV Core-core repulsion = 17889.282630 eV Total energy + Delta-G solvation = -2992.712100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73155 -37.81843 -35.49865 -33.37039 -32.69022 -31.51021 -27.68948 -27.49475 -27.04155 -26.91187 -23.98275 -21.88823 -19.81270 -19.01018 -18.60189 -16.95871 -16.57317 -15.55262 -15.08259 -14.64436 -14.61100 -13.95967 -13.76302 -13.62380 -13.20798 -12.70200 -12.19639 -12.12490 -11.82304 -11.69826 -11.43566 -11.26244 -11.02300 -10.92971 -10.74900 -10.67538 -10.54721 -10.44520 -10.26690 -10.06249 -9.69957 -9.60728 -9.39215 -9.21567 -8.80871 -8.39732 -7.48025 -6.00599 -4.03761 3.28888 3.38090 3.39297 3.46059 4.21306 4.46585 5.14931 5.18031 5.19888 5.35465 5.47646 5.67090 5.72395 5.74234 5.76666 5.87916 6.00610 6.08452 6.19364 6.30340 6.32650 6.39771 6.42855 6.58741 6.69307 6.73735 6.81714 6.83582 6.90773 7.08357 7.15589 7.26357 7.41447 7.58567 7.91400 8.15720 8.33464 8.90489 9.03971 9.61176 9.83379 11.04670 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.010137 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.379667 B = 2761.556894 C = 3838.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.383 6.383 6 C 0.643 3.357 7 O -0.568 6.568 8 N -0.665 5.665 9 C 0.311 3.689 10 C -0.497 4.497 11 H 0.059 0.941 12 C 0.074 3.926 13 N -0.882 5.882 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.276 1.276 18 C -0.126 4.126 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.098 4.098 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.384 0.616 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 4.050 -5.105 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.101 3.899 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.300 6.300 6 C 0.395 3.605 7 O -0.458 6.458 8 N -0.320 5.320 9 C 0.230 3.770 10 C -0.536 4.536 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.519 5.519 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.202 1.202 18 C -0.164 4.164 19 C -0.162 4.162 20 C -0.167 4.167 21 C -0.136 4.136 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.216 0.784 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.481 3.962 -5.424 8.670 hybrid contribution -0.955 0.323 0.400 1.084 sum 4.526 4.285 -5.024 8.006 Atomic orbital electron populations 1.22483 0.94634 1.05506 1.01195 1.21721 0.94020 0.90994 0.83191 1.21819 1.01677 0.93696 1.02330 1.22487 1.00849 1.04001 0.96317 1.86280 1.72151 1.26167 1.45377 1.18193 0.79454 0.79095 0.83718 1.90767 1.40494 1.69844 1.44669 1.45540 1.57448 1.10484 1.18519 1.18632 0.93893 0.74649 0.89849 1.21198 0.91183 1.28450 1.12749 0.92247 1.24923 0.98266 0.94315 0.95460 1.69913 1.35641 1.35239 1.11147 0.86700 0.86069 0.78059 0.77425 1.20321 1.21570 1.20198 1.22847 0.93292 1.00372 0.99928 1.22368 0.98258 0.99609 0.95981 1.22283 0.98845 0.99794 0.95771 1.22214 0.93049 0.99886 0.98478 0.92700 0.92384 0.88743 0.92007 0.91028 0.91882 0.88986 0.92249 0.92870 0.78377 0.93084 0.91791 0.91791 0.92911 0.93373 0.93077 0.93438 0.91293 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.37 37.16 0.31 -2.90 16 2 C 0.14 2.38 1.13 -90.62 -0.10 2.28 16 3 C -0.14 -1.83 8.85 37.16 0.33 -1.50 16 4 C -0.18 -2.88 8.37 37.16 0.31 -2.57 16 5 O -0.38 -7.98 9.94 -40.32 -0.40 -8.38 16 6 C 0.64 15.02 7.36 54.06 0.40 15.42 16 7 O -0.57 -14.24 9.58 -19.27 -0.18 -14.42 16 8 N -0.67 -15.37 4.45 -51.99 -0.23 -15.60 16 9 C 0.31 7.31 0.32 -131.31 -0.04 7.27 16 10 C -0.50 -13.38 6.73 -34.44 -0.23 -13.61 16 11 H 0.06 1.67 7.78 -52.49 -0.41 1.26 16 12 C 0.07 2.00 5.28 -17.82 -0.09 1.90 16 13 N -0.88 -23.86 11.96 55.43 0.66 -23.20 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 C -0.13 -2.69 5.67 -24.74 -0.14 -2.83 16 19 C -0.12 -2.23 6.79 -25.08 -0.17 -2.40 16 20 C -0.13 -2.30 6.80 -25.61 -0.17 -2.47 16 21 C -0.10 -2.10 5.17 -25.61 -0.13 -2.23 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.09 2.02 5.88 -51.93 -0.31 1.72 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.75 5.88 -51.93 -0.31 1.44 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.38 8.52 8.38 -40.82 -0.34 8.17 16 32 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 33 H 0.06 1.45 6.41 -51.92 -0.33 1.12 16 34 H 0.06 1.36 8.05 -51.93 -0.42 0.94 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.58 7.83 -51.93 -0.41 1.17 16 40 H 0.06 1.42 7.57 -51.93 -0.39 1.02 16 LS Contribution 313.29 15.07 4.72 4.72 Total: -1.00 -28.52 313.29 -6.89 -35.41 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.70 Total: 8.36 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 0.26 Total: -3.65 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.43 Total: -38.80 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.59 Total: -22.80 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.52 -6.89 -35.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140038200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.243 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds