Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 C 1.53004 * 109.47071 * 240.00034 * 2 1 3 5 5 O 1.45197 * 109.47083 * 120.00358 * 2 1 3 6 6 C 1.34637 * 117.00272 * 59.99889 * 5 2 1 7 7 O 1.21501 * 120.00122 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99900 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99809 * 185.26108 * 8 6 5 10 10 C 1.50697 * 110.43328 * 297.94850 * 9 8 6 11 11 H 1.08000 * 120.00089 * 122.57837 * 10 9 8 12 12 C 1.37876 * 119.99956 * 302.57439 * 10 9 8 13 13 N 1.31517 * 119.99762 * 355.00672 * 12 10 9 14 14 Si 1.86799 * 119.99878 * 175.00575 * 12 10 9 15 15 H 1.48495 * 109.47083 * 60.00524 * 14 12 10 16 16 H 1.48502 * 109.47075 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47117 * 300.00039 * 14 12 10 18 18 C 1.54892 * 110.48615 * 60.63258 * 9 8 6 19 19 C 1.54886 * 102.75042 * 80.73437 * 18 9 8 20 20 C 1.54261 * 104.19599 * 37.94352 * 19 18 9 21 21 C 1.53876 * 106.60062 * 336.38780 * 20 19 18 22 22 H 1.08998 * 109.47012 * 300.00020 * 1 2 3 23 23 H 1.08999 * 109.47472 * 59.99898 * 1 2 3 24 24 H 1.08998 * 109.47031 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47366 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.46883 * 300.00462 * 3 2 1 27 27 H 1.09002 * 109.46839 * 59.99531 * 3 2 1 28 28 H 1.08998 * 109.47132 * 299.99863 * 4 2 1 29 29 H 1.08995 * 109.47192 * 60.00153 * 4 2 1 30 30 H 1.09001 * 109.47268 * 179.97438 * 4 2 1 31 31 H 0.96998 * 120.00152 * 5.25348 * 8 6 5 32 32 H 0.96999 * 119.99424 * 184.99469 * 13 12 10 33 33 H 1.09009 * 110.75493 * 322.41764 * 18 9 8 34 34 H 1.09002 * 110.75702 * 199.05177 * 18 9 8 35 35 H 1.08998 * 110.48711 * 279.26193 * 19 18 9 36 36 H 1.09005 * 110.48462 * 156.61870 * 19 18 9 37 37 H 1.09004 * 110.03226 * 95.67379 * 20 19 18 38 38 H 1.09004 * 110.03614 * 217.05853 * 20 19 18 39 39 H 1.08997 * 110.03467 * 119.27952 * 21 20 19 40 40 H 1.08997 * 110.03610 * 240.72166 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5040 8 7 2.0672 -2.6655 2.4171 9 6 1.7712 -4.0961 2.5270 10 6 0.2820 -4.3237 2.5661 11 1 -0.1866 -4.9596 1.8296 12 6 -0.4822 -3.7202 3.5422 13 7 0.0985 -3.0261 4.4965 14 14 -2.3423 -3.8883 3.5090 15 1 -2.7113 -5.3237 3.6011 16 1 -2.9264 -3.1519 4.6587 17 1 -2.8680 -3.3223 2.2407 18 6 2.4106 -4.8739 1.3500 19 6 3.8826 -5.0327 1.8048 20 6 3.7841 -5.2868 3.3232 21 6 2.4416 -4.6913 3.7824 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7209 -1.2495 31 1 2.5619 -2.2172 3.1207 32 1 -0.4316 -2.6625 5.2229 33 1 2.3515 -4.2960 0.4276 34 1 1.9368 -5.8479 1.2279 35 1 4.4439 -4.1197 1.6065 36 1 4.3467 -5.8831 1.3051 37 1 3.8059 -6.3579 3.5247 38 1 4.6081 -4.7934 3.8387 39 1 1.8119 -5.4732 4.2067 40 1 2.6136 -3.9080 4.5206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140038200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -114.849163 kcal Electronic energy + Delta-G solvation = -20882.740403 eV Core-core repulsion = 17889.282630 eV Total energy + Delta-G solvation = -2993.457773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42110 -39.47684 -37.14790 -34.96071 -34.57458 -33.33539 -29.40668 -29.25620 -28.28122 -28.19926 -25.91116 -23.51773 -21.36227 -20.69267 -20.31545 -18.66581 -18.50610 -17.09458 -16.83072 -16.54658 -16.23458 -15.60760 -15.31700 -15.08537 -14.86619 -14.25171 -13.79020 -13.63051 -13.23198 -13.07201 -12.95849 -12.75114 -12.73751 -12.68274 -12.55706 -12.38066 -12.17963 -12.01004 -11.80722 -11.71405 -11.39068 -11.17499 -11.14349 -11.04607 -10.62970 -10.40358 -9.35760 -8.07539 -6.14924 1.33685 1.37543 1.43922 1.73920 2.38302 2.45239 3.18965 3.78460 3.89820 3.91656 4.06593 4.10670 4.14657 4.27024 4.62231 4.67016 4.80842 4.82671 4.84252 4.88823 4.95356 4.98300 5.02421 5.09606 5.13122 5.20396 5.28409 5.36451 5.38956 5.41060 5.49909 5.64836 5.74154 5.77293 5.89338 6.27692 6.42572 6.82847 7.17361 7.51454 8.04330 8.94566 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016629 B = 0.010137 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.379667 B = 2761.556894 C = 3838.364456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.122 3.878 3 C -0.130 4.130 4 C -0.172 4.172 5 O -0.388 6.388 6 C 0.640 3.360 7 O -0.591 6.591 8 N -0.665 5.665 9 C 0.302 3.698 10 C -0.513 4.513 11 H 0.036 0.964 12 C 0.038 3.962 13 N -0.892 5.892 14 Si 0.930 3.070 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.292 1.292 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.091 4.091 22 H 0.046 0.954 23 H 0.093 0.907 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.387 0.613 32 H 0.258 0.742 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 4.922 -5.621 10.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.086 3.914 3 C -0.187 4.187 4 C -0.230 4.230 5 O -0.304 6.304 6 C 0.392 3.608 7 O -0.482 6.482 8 N -0.320 5.320 9 C 0.219 3.781 10 C -0.552 4.552 11 H 0.054 0.946 12 C -0.163 4.163 13 N -0.530 5.530 14 Si 0.758 3.242 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.219 1.219 18 C -0.163 4.163 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.129 4.129 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.220 0.780 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.878 4.841 -5.933 10.293 hybrid contribution -1.438 0.098 0.476 1.518 sum 5.440 4.939 -5.457 9.152 Atomic orbital electron populations 1.22427 0.95408 1.03039 1.02554 1.22268 0.93736 0.93049 0.82388 1.21834 1.02358 0.90600 1.03890 1.22402 1.01385 1.02095 0.97086 1.86275 1.72125 1.24729 1.47313 1.18297 0.79141 0.79886 0.83454 1.90768 1.41352 1.70664 1.45395 1.45370 1.57422 1.10508 1.18677 1.18712 0.92393 0.75188 0.91767 1.21399 0.93498 1.28269 1.12042 0.94611 1.25381 1.00844 0.94550 0.95559 1.69965 1.36143 1.35665 1.11267 0.86056 0.83112 0.78369 0.76672 1.19414 1.20709 1.21871 1.22749 0.95926 0.99252 0.98336 1.22297 0.95586 1.01030 0.96117 1.22207 0.97010 1.00896 0.95567 1.22053 0.94790 0.98940 0.97155 0.93470 0.88868 0.92985 0.90959 0.87769 0.92014 0.92535 0.89096 0.91895 0.77961 0.93238 0.93711 0.92435 0.92489 0.90627 0.91271 0.91149 0.93322 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.19 8.37 71.98 0.60 -5.59 16 2 C 0.12 4.04 1.13 -10.79 -0.01 4.03 16 3 C -0.13 -3.04 8.85 71.98 0.64 -2.41 16 4 C -0.17 -5.28 8.37 71.98 0.60 -4.68 16 5 O -0.39 -16.08 9.94 -55.46 -0.55 -16.63 16 6 C 0.64 30.40 7.36 129.79 0.95 31.35 16 7 O -0.59 -30.64 9.58 19.84 0.19 -30.45 16 8 N -0.66 -31.10 4.45 -548.81 -2.44 -33.55 16 9 C 0.30 14.35 0.32 3.93 0.00 14.35 16 10 C -0.51 -28.45 6.73 25.60 0.17 -28.28 16 11 H 0.04 2.09 7.78 -2.91 -0.02 2.07 16 12 C 0.04 2.12 5.28 84.65 0.45 2.56 16 13 N -0.89 -48.91 11.96 21.45 0.26 -48.65 16 14 Si 0.93 45.50 29.54 68.60 2.03 47.52 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 18 C -0.12 -5.31 5.67 31.89 0.18 -5.13 16 19 C -0.11 -3.79 6.79 31.67 0.22 -3.58 16 20 C -0.12 -3.94 6.80 31.32 0.21 -3.73 16 21 C -0.09 -3.87 5.17 31.32 0.16 -3.71 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.05 2.28 5.88 -2.39 -0.01 2.26 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.16 5.88 -2.39 -0.01 2.15 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.39 17.29 8.38 -92.71 -0.78 16.51 16 32 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 33 H 0.04 2.06 6.41 -2.38 -0.02 2.05 16 34 H 0.06 2.48 8.05 -2.39 -0.02 2.46 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 2.23 7.83 -2.39 -0.02 2.22 16 40 H 0.05 2.32 7.57 -2.39 -0.02 2.30 16 Total: -1.00 -63.33 313.29 3.89 -59.44 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.24 Total: 27.13 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 4.18 Total: -4.81 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.19 Total: -82.20 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.36 Total: -47.08 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -63.33 3.89 -59.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140038200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.413 kcal (2) G-P(sol) polarization free energy of solvation -63.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds