Wall clock time and date at job start Mon Mar 30 2020 06:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47515 * 2 1 4 4 C 1.53005 * 109.47188 * 240.00114 * 2 1 3 5 5 O 1.45203 * 109.47467 * 120.00275 * 2 1 3 6 6 C 1.34641 * 116.99909 * 59.99553 * 5 2 1 7 7 O 1.21509 * 119.99776 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99845 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00040 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.53465 * 36.15895 * 9 8 6 11 11 C 1.54266 * 110.48818 * 273.54848 * 9 8 6 12 12 C 1.53872 * 106.59640 * 217.70889 * 11 9 8 13 13 C 1.54266 * 106.60044 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.48431 * 264.79545 * 13 12 11 15 15 C 1.50699 * 110.48396 * 142.28562 * 13 12 11 16 16 H 1.07998 * 120.00244 * 241.45019 * 15 13 12 17 17 C 1.37871 * 120.00027 * 61.45717 * 15 13 12 18 18 N 1.31523 * 120.00373 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00164 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47070 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47213 * 119.99967 * 19 17 15 22 22 H 1.48501 * 109.47222 * 239.99955 * 19 17 15 23 23 C 1.54887 * 110.48485 * 158.76961 * 9 8 6 24 24 H 1.09001 * 109.47081 * 299.99817 * 1 2 3 25 25 H 1.09000 * 109.47529 * 59.99564 * 1 2 3 26 26 H 1.09007 * 109.47656 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47712 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47252 * 300.00189 * 3 2 1 29 29 H 1.08998 * 109.47025 * 59.99527 * 3 2 1 30 30 H 1.09007 * 109.46760 * 300.00473 * 4 2 1 31 31 H 1.09000 * 109.47021 * 59.99404 * 4 2 1 32 32 H 1.08999 * 109.47600 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00351 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.03179 * 336.99661 * 11 9 8 35 35 H 1.09003 * 110.02980 * 98.37589 * 11 9 8 36 36 H 1.09002 * 110.03208 * 119.28196 * 12 11 9 37 37 H 1.08996 * 110.03362 * 240.71095 * 12 11 9 38 38 H 0.96997 * 120.00206 * 180.02562 * 18 17 15 39 39 H 1.09001 * 110.75744 * 274.93448 * 23 9 8 40 40 H 1.09000 * 110.75698 * 38.31266 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6731 -4.0667 2.5836 10 1 1.6409 -4.5721 1.6184 11 6 0.3046 -4.1624 3.2891 12 6 0.3807 -5.3751 4.2332 13 6 1.7926 -5.9743 4.0679 14 1 1.7787 -6.7894 3.3444 15 6 2.3190 -6.4575 5.3948 16 1 3.2161 -6.0229 5.8104 17 6 1.6555 -7.4544 6.0780 18 7 0.5628 -7.9834 5.5721 19 14 2.3084 -8.0538 7.7223 20 1 3.5417 -7.3026 8.0688 21 1 1.2826 -7.8318 8.7730 22 1 2.6197 -9.5031 7.6328 23 6 2.6472 -4.7933 3.5438 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6765 -1.7489 -1.2493 31 1 1.6765 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2491 33 1 2.6263 -2.2364 3.0836 34 1 0.1154 -3.2545 3.8619 35 1 -0.4855 -4.3105 2.5528 36 1 0.2286 -5.0558 5.2642 37 1 -0.3724 -6.1125 3.9553 38 1 0.0958 -8.6845 6.0529 39 1 3.5209 -5.1587 3.0041 40 1 2.9438 -4.1374 4.3624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144077201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:26 Heat of formation + Delta-G solvation = -105.983843 kcal Electronic energy + Delta-G solvation = -19521.315239 eV Core-core repulsion = 16528.241896 eV Total energy + Delta-G solvation = -2993.073344 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58672 -38.07067 -36.36914 -34.24309 -33.43962 -31.86551 -28.17156 -27.50666 -27.42997 -27.06292 -23.97716 -22.29931 -20.15395 -19.68219 -19.00945 -17.86227 -16.71598 -16.15591 -15.94119 -15.03230 -14.70487 -14.39977 -14.34149 -14.22220 -13.49390 -12.61412 -12.56120 -12.49742 -12.30498 -11.95748 -11.95136 -11.81832 -11.61931 -11.33565 -11.16834 -10.97536 -10.86324 -10.54560 -10.32808 -10.29632 -10.01366 -9.81929 -9.55456 -9.26327 -8.73984 -8.65794 -8.39276 -6.01470 -4.04873 2.40716 3.09884 3.29455 3.37894 3.41088 4.36889 4.44411 4.65143 4.68637 4.83500 5.30235 5.34542 5.40798 5.43467 5.57987 5.60275 5.62882 5.68439 5.79116 5.81619 5.87138 6.17030 6.24425 6.31133 6.38275 6.50732 6.60079 6.64568 6.75097 6.89321 6.91826 7.26443 7.31519 7.71887 7.77360 7.88161 8.00602 8.42530 8.66319 8.97848 9.59441 11.08028 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.055414 B = 0.003934 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.169024 B = 7116.496662 C = 7270.490571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.370 6.370 6 C 0.645 3.355 7 O -0.572 6.572 8 N -0.699 5.699 9 C 0.152 3.848 10 H 0.087 0.913 11 C -0.136 4.136 12 C -0.094 4.094 13 C 0.051 3.949 14 H 0.032 0.968 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.120 4.120 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.961 15.738 -9.645 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.285 6.285 6 C 0.398 3.602 7 O -0.462 6.462 8 N -0.356 5.356 9 C 0.050 3.950 10 H 0.105 0.895 11 C -0.175 4.175 12 C -0.133 4.133 13 C 0.032 3.968 14 H 0.050 0.950 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.158 4.158 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.465 15.393 -10.076 18.455 hybrid contribution 0.406 -0.135 1.185 1.260 sum 1.871 15.258 -8.891 17.758 Atomic orbital electron populations 1.22512 0.94143 1.05247 1.02153 1.21980 0.94308 0.91382 0.82436 1.21846 1.02133 0.92825 1.02897 1.22516 1.01427 1.03721 0.96370 1.86295 1.71828 1.24251 1.46165 1.18209 0.79070 0.80194 0.82710 1.90869 1.41355 1.70280 1.43671 1.45152 1.54629 1.13112 1.22724 1.22148 0.95970 0.76888 0.99978 0.89461 1.22677 0.95800 1.00183 0.98871 1.22056 1.00420 0.93749 0.97042 1.19419 0.90134 0.91116 0.96127 0.94953 1.21155 1.10454 1.19541 1.04151 0.92514 1.24984 0.94968 0.96295 0.97735 1.69986 1.17507 1.26714 1.38393 0.86582 0.78922 0.78597 0.84150 1.19812 1.21104 1.21084 1.22901 0.97280 0.98917 0.96680 0.92283 0.91439 0.89175 0.91585 0.90380 0.91569 0.89206 0.91427 0.92307 0.76324 0.92958 0.92837 0.92808 0.92388 0.93101 0.92628 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.37 37.15 0.31 -1.82 16 2 C 0.14 1.59 1.13 -90.62 -0.10 1.49 16 3 C -0.14 -1.20 8.85 37.15 0.33 -0.87 16 4 C -0.18 -2.09 8.37 37.16 0.31 -1.78 16 5 O -0.37 -5.29 9.94 -40.33 -0.40 -5.69 16 6 C 0.65 10.57 8.05 54.05 0.44 11.00 16 7 O -0.57 -10.54 11.59 -19.28 -0.22 -10.77 16 8 N -0.70 -11.04 5.12 -57.10 -0.29 -11.33 16 9 C 0.15 2.77 3.16 -66.27 -0.21 2.56 16 10 H 0.09 1.67 7.67 -51.93 -0.40 1.27 16 11 C -0.14 -2.65 6.53 -25.61 -0.17 -2.82 16 12 C -0.09 -2.17 5.40 -25.61 -0.14 -2.30 16 13 C 0.05 1.23 2.80 -90.10 -0.25 0.97 16 14 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 15 C -0.51 -13.72 8.40 -34.44 -0.29 -14.01 16 16 H 0.06 1.49 7.77 -52.49 -0.41 1.08 16 17 C 0.06 1.69 5.33 -17.82 -0.09 1.60 16 18 N -0.89 -25.20 12.35 55.43 0.68 -24.51 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.12 -2.33 5.88 -24.72 -0.15 -2.47 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 5.50 8.64 -40.82 -0.35 5.14 16 34 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 1.31 7.83 -51.93 -0.41 0.91 16 37 H 0.06 1.43 7.94 -51.93 -0.41 1.02 16 38 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -29.05 319.44 -7.23 -36.28 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.78 Total: 3.71 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.01 Total: -8.45 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.39 Total: -35.85 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.62 Total: -16.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.05 -7.23 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144077201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.701 kcal (2) G-P(sol) polarization free energy of solvation -29.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds