Wall clock time and date at job start Mon Mar 30 2020 06:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47515 * 2 1 4 4 C 1.53005 * 109.47188 * 240.00114 * 2 1 3 5 5 O 1.45203 * 109.47467 * 120.00275 * 2 1 3 6 6 C 1.34641 * 116.99909 * 59.99553 * 5 2 1 7 7 O 1.21509 * 119.99776 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99845 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00040 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.53465 * 36.15895 * 9 8 6 11 11 C 1.54266 * 110.48818 * 273.54848 * 9 8 6 12 12 C 1.53872 * 106.59640 * 217.70889 * 11 9 8 13 13 C 1.54266 * 106.60044 * 359.97438 * 12 11 9 14 14 H 1.08998 * 110.48431 * 264.79545 * 13 12 11 15 15 C 1.50699 * 110.48396 * 142.28562 * 13 12 11 16 16 H 1.07998 * 120.00244 * 241.45019 * 15 13 12 17 17 C 1.37871 * 120.00027 * 61.45717 * 15 13 12 18 18 N 1.31523 * 120.00373 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 120.00164 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47070 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47213 * 119.99967 * 19 17 15 22 22 H 1.48501 * 109.47222 * 239.99955 * 19 17 15 23 23 C 1.54887 * 110.48485 * 158.76961 * 9 8 6 24 24 H 1.09001 * 109.47081 * 299.99817 * 1 2 3 25 25 H 1.09000 * 109.47529 * 59.99564 * 1 2 3 26 26 H 1.09007 * 109.47656 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47712 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47252 * 300.00189 * 3 2 1 29 29 H 1.08998 * 109.47025 * 59.99527 * 3 2 1 30 30 H 1.09007 * 109.46760 * 300.00473 * 4 2 1 31 31 H 1.09000 * 109.47021 * 59.99404 * 4 2 1 32 32 H 1.08999 * 109.47600 * 180.02562 * 4 2 1 33 33 H 0.97005 * 120.00351 * 0.02562 * 8 6 5 34 34 H 1.09003 * 110.03179 * 336.99661 * 11 9 8 35 35 H 1.09003 * 110.02980 * 98.37589 * 11 9 8 36 36 H 1.09002 * 110.03208 * 119.28196 * 12 11 9 37 37 H 1.08996 * 110.03362 * 240.71095 * 12 11 9 38 38 H 0.96997 * 120.00206 * 180.02562 * 18 17 15 39 39 H 1.09001 * 110.75744 * 274.93448 * 23 9 8 40 40 H 1.09000 * 110.75698 * 38.31266 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4170 9 6 1.6731 -4.0667 2.5836 10 1 1.6409 -4.5721 1.6184 11 6 0.3046 -4.1624 3.2891 12 6 0.3807 -5.3751 4.2332 13 6 1.7926 -5.9743 4.0679 14 1 1.7787 -6.7894 3.3444 15 6 2.3190 -6.4575 5.3948 16 1 3.2161 -6.0229 5.8104 17 6 1.6555 -7.4544 6.0780 18 7 0.5628 -7.9834 5.5721 19 14 2.3084 -8.0538 7.7223 20 1 3.5417 -7.3026 8.0688 21 1 1.2826 -7.8318 8.7730 22 1 2.6197 -9.5031 7.6328 23 6 2.6472 -4.7933 3.5438 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6765 -1.7489 -1.2493 31 1 1.6765 -0.2074 -2.1393 32 1 3.1299 -0.7217 -1.2491 33 1 2.6263 -2.2364 3.0836 34 1 0.1154 -3.2545 3.8619 35 1 -0.4855 -4.3105 2.5528 36 1 0.2286 -5.0558 5.2642 37 1 -0.3724 -6.1125 3.9553 38 1 0.0958 -8.6845 6.0529 39 1 3.5209 -5.1587 3.0041 40 1 2.9438 -4.1374 4.3624 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144077201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:26 Heat of formation + Delta-G solvation = -123.527567 kcal Electronic energy + Delta-G solvation = -19522.075992 eV Core-core repulsion = 16528.241896 eV Total energy + Delta-G solvation = -2993.834096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78448 -39.52216 -37.73765 -35.55436 -34.84548 -33.62862 -29.97666 -28.75574 -28.32379 -28.24999 -25.87437 -23.55889 -21.61629 -21.04196 -20.69176 -19.10616 -18.43808 -17.53125 -17.13176 -16.60041 -16.42907 -15.98751 -15.54163 -15.27925 -14.58502 -14.31497 -14.11562 -13.71949 -13.28865 -13.24729 -13.06647 -12.86615 -12.82118 -12.80724 -12.71174 -12.39313 -12.30683 -12.27979 -12.04801 -11.70597 -11.42494 -11.34006 -11.11366 -11.02275 -10.73688 -10.47092 -10.08192 -8.09444 -6.19369 1.23084 1.42990 1.45421 1.56180 1.82025 2.46116 3.21967 3.22638 3.80124 3.84023 3.87907 3.99294 4.00062 4.18973 4.54144 4.65055 4.65878 4.72740 4.80143 4.81483 4.86088 4.88921 4.91942 4.98809 5.04212 5.13552 5.14682 5.26799 5.32743 5.39166 5.42135 5.55993 5.65420 5.68781 5.93201 5.99048 6.38723 6.51649 6.92110 7.42158 7.48579 8.99756 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.055414 B = 0.003934 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.169024 B = 7116.496662 C = 7270.490571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.595 6.595 8 N -0.692 5.692 9 C 0.169 3.831 10 H 0.077 0.923 11 C -0.125 4.125 12 C -0.083 4.083 13 C 0.039 3.961 14 H 0.002 0.998 15 C -0.528 4.528 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.954 3.046 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.284 1.284 23 C -0.105 4.105 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.415 0.585 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 17.957 -9.747 20.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.486 6.486 8 N -0.350 5.350 9 C 0.065 3.935 10 H 0.096 0.904 11 C -0.164 4.164 12 C -0.122 4.122 13 C 0.020 3.980 14 H 0.020 0.980 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.560 5.560 19 Si 0.780 3.220 20 H -0.187 1.187 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.143 4.143 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.252 0.748 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.608 17.649 -10.176 20.539 hybrid contribution 0.036 -0.797 1.148 1.398 sum 2.643 16.853 -9.028 19.301 Atomic orbital electron populations 1.22476 0.94215 1.03524 1.03560 1.22439 0.94519 0.92881 0.81575 1.21873 1.02457 0.90392 1.04342 1.22476 1.01651 1.02144 0.97437 1.86314 1.71667 1.22870 1.47505 1.18274 0.78677 0.80857 0.82302 1.90878 1.42276 1.70992 1.44446 1.44867 1.54804 1.12168 1.23197 1.21721 0.94660 0.78205 0.98908 0.90446 1.22532 0.96785 0.98883 0.98194 1.21823 0.99125 0.94469 0.96742 1.19410 0.91708 0.92080 0.94767 0.97979 1.21546 1.10455 1.19524 1.05073 0.92128 1.25783 0.95233 0.96673 1.01202 1.70120 1.18747 1.27305 1.39848 0.85567 0.78559 0.77953 0.79932 1.18705 1.20953 1.21000 1.22694 0.97024 0.97309 0.97246 0.92056 0.88894 0.92346 0.91107 0.87824 0.91239 0.92313 0.88914 0.91878 0.74811 0.91603 0.92976 0.94599 0.95169 0.93215 0.91468 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.37 71.98 0.60 -3.28 16 2 C 0.12 2.60 1.13 -10.80 -0.01 2.58 16 3 C -0.13 -1.84 8.85 71.98 0.64 -1.20 16 4 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 5 O -0.37 -9.87 9.94 -55.51 -0.55 -10.43 16 6 C 0.65 20.42 8.05 129.79 1.04 21.47 16 7 O -0.59 -21.80 11.59 19.81 0.23 -21.57 16 8 N -0.69 -20.78 5.12 -564.99 -2.89 -23.67 16 9 C 0.17 5.99 3.16 46.06 0.15 6.14 16 10 H 0.08 2.95 7.67 -2.39 -0.02 2.94 16 11 C -0.13 -4.84 6.53 31.32 0.20 -4.63 16 12 C -0.08 -3.91 5.40 31.32 0.17 -3.74 16 13 C 0.04 1.92 2.80 -10.45 -0.03 1.89 16 14 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 15 C -0.53 -28.25 8.40 25.60 0.22 -28.04 16 16 H 0.06 3.12 7.77 -2.91 -0.02 3.10 16 17 C 0.01 0.53 5.33 84.65 0.45 0.98 16 18 N -0.92 -53.53 12.35 21.45 0.26 -53.27 16 19 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 C -0.10 -3.97 5.88 31.89 0.19 -3.79 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.66 5.88 -2.38 -0.01 1.65 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.63 5.88 -2.38 -0.01 1.62 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 10.39 8.64 -92.70 -0.80 9.59 16 34 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.78 7.83 -2.39 -0.02 1.76 16 37 H 0.03 1.55 7.94 -2.39 -0.02 1.53 16 38 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 Total: -1.00 -63.34 319.44 3.51 -59.83 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.21 Total: 18.77 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.22 Total: -14.79 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.63 Total: -76.94 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.32 Total: -31.99 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -63.34 3.51 -59.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144077201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.698 kcal (2) G-P(sol) polarization free energy of solvation -63.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds