Wall clock time and date at job start Mon Mar 30 2020 06:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09000 * 110.01950 * 325.07319 * 9 8 6 11 11 C 1.54270 * 110.02900 * 86.45863 * 9 8 6 12 12 C 1.54883 * 104.19482 * 142.89370 * 11 9 8 13 13 C 1.54885 * 102.75097 * 322.05531 * 12 11 9 14 14 H 1.08998 * 110.49069 * 279.13432 * 13 12 11 15 15 C 1.50698 * 110.48537 * 156.62047 * 13 12 11 16 16 H 1.08006 * 119.99891 * 241.45606 * 15 13 12 17 17 C 1.37874 * 120.00176 * 61.45784 * 15 13 12 18 18 N 1.31515 * 119.99829 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00247 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47239 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47456 * 119.99888 * 19 17 15 22 22 H 1.48507 * 109.47162 * 240.00086 * 19 17 15 23 23 C 1.53869 * 110.03155 * 203.62224 * 9 8 6 24 24 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 25 25 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 26 26 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 29 29 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 30 30 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 31 31 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 32 32 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 33 33 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 34 34 H 1.09006 * 110.48830 * 261.57429 * 11 9 8 35 35 H 1.09000 * 110.48657 * 24.21165 * 11 9 8 36 36 H 1.08999 * 110.75677 * 80.37631 * 12 11 9 37 37 H 1.09007 * 110.75646 * 203.74332 * 12 11 9 38 38 H 0.97000 * 120.00050 * 179.97438 * 18 17 15 39 39 H 1.08993 * 110.03561 * 0.02562 * 23 9 8 40 40 H 1.08999 * 110.03128 * 121.43529 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 0.6565 -4.2137 2.2022 11 6 2.6562 -4.9880 1.8537 12 6 2.7788 -6.2250 2.7776 13 6 2.7470 -5.5985 4.1938 14 1 3.7294 -5.2092 4.4609 15 6 2.2894 -6.6135 5.2094 16 1 1.3871 -6.4403 5.7771 17 6 3.0225 -7.7631 5.4138 18 7 4.1210 -7.9742 4.7221 19 14 2.4556 -9.0209 6.6731 20 1 1.2008 -8.5502 7.3127 21 1 2.2105 -10.3210 5.9987 22 1 3.5053 -9.1912 7.7098 23 6 1.7220 -4.4515 4.0771 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6768 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1392 32 1 3.1301 -0.7216 -1.2488 33 1 2.6225 -2.2349 3.0862 34 1 2.2589 -5.2765 0.8805 35 1 3.6234 -4.4980 1.7419 36 1 1.9344 -6.8993 2.6344 37 1 3.7221 -6.7436 2.6058 38 1 4.6370 -8.7828 4.8661 39 1 2.0463 -3.5985 4.6732 40 1 0.7421 -4.7908 4.4127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144077394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:28 Heat of formation + Delta-G solvation = -121.886555 kcal Electronic energy + Delta-G solvation = -19546.604053 eV Core-core repulsion = 16552.841116 eV Total energy + Delta-G solvation = -2993.762937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.78827 -39.54964 -37.71584 -35.52615 -34.84067 -33.58672 -29.99843 -28.73119 -28.32092 -28.25055 -25.87890 -23.55439 -21.33793 -21.23917 -20.71930 -19.20088 -18.42478 -17.64426 -17.09257 -16.61499 -16.46316 -15.69810 -15.34116 -15.21743 -14.81323 -14.37894 -14.19393 -13.67979 -13.29270 -13.23022 -12.98182 -12.86295 -12.81964 -12.77305 -12.67765 -12.46527 -12.32587 -12.27257 -12.00110 -11.62655 -11.46884 -11.33802 -11.11684 -11.02108 -10.78494 -10.43504 -10.07275 -8.08788 -6.18347 1.24774 1.42420 1.45207 1.55635 1.82583 2.46165 3.21907 3.24271 3.80281 3.84369 3.89351 3.99306 3.99603 4.24402 4.54793 4.65288 4.66214 4.72621 4.80244 4.82188 4.85709 4.89784 4.91883 5.00860 5.02833 5.13910 5.18065 5.27976 5.32937 5.39392 5.41504 5.57527 5.67362 5.70559 5.91677 6.01855 6.39868 6.51194 6.92380 7.42095 7.49295 8.99538 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.057830 B = 0.003928 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.061833 B = 7125.910047 C = 7231.959145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.594 6.594 8 N -0.694 5.694 9 C 0.171 3.829 10 H 0.080 0.920 11 C -0.126 4.126 12 C -0.091 4.091 13 C 0.040 3.960 14 H 0.007 0.993 15 C -0.530 4.530 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.110 4.110 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.413 0.587 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.259 0.741 39 H 0.072 0.928 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 17.251 -8.741 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.485 6.485 8 N -0.353 5.353 9 C 0.067 3.933 10 H 0.098 0.902 11 C -0.165 4.165 12 C -0.129 4.129 13 C 0.022 3.978 14 H 0.025 0.975 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.148 4.148 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.250 0.750 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.440 16.949 -9.212 19.795 hybrid contribution 0.250 -1.036 0.875 1.379 sum -4.190 15.913 -8.337 18.447 Atomic orbital electron populations 1.22470 0.93959 1.03596 1.03620 1.22444 0.94696 0.92811 0.81500 1.21877 1.02363 0.90469 1.04387 1.22476 1.01529 1.02203 0.97551 1.86317 1.71698 1.22979 1.47501 1.18268 0.78687 0.80758 0.82370 1.90868 1.42478 1.71105 1.44063 1.45080 1.54834 1.12356 1.23054 1.21546 0.98052 0.77123 0.96532 0.90199 1.22759 0.98702 0.96757 0.98239 1.22208 0.99534 0.95252 0.95950 1.19436 0.93409 0.92134 0.92856 0.97529 1.21612 1.09269 1.04515 1.21463 0.92519 1.25736 0.95060 1.00040 0.97832 1.70091 1.16465 1.27157 1.42073 0.85607 0.78440 0.79037 0.79171 1.18989 1.20970 1.20838 1.22416 1.00800 0.98804 0.92763 0.91911 0.88898 0.92222 0.91329 0.87776 0.91140 0.92260 0.88854 0.92168 0.75042 0.92371 0.92039 0.94476 0.93738 0.93211 0.90919 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.75 8.37 71.98 0.60 -3.15 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.13 -1.89 8.85 71.98 0.64 -1.26 16 4 C -0.18 -3.91 8.37 71.98 0.60 -3.31 16 5 O -0.37 -10.10 9.94 -55.47 -0.55 -10.65 16 6 C 0.65 20.60 8.05 129.79 1.04 21.64 16 7 O -0.59 -21.57 11.56 19.80 0.23 -21.34 16 8 N -0.69 -21.35 5.05 -566.65 -2.86 -24.21 16 9 C 0.17 6.05 3.23 45.71 0.15 6.19 16 10 H 0.08 2.93 7.61 -2.39 -0.02 2.91 16 11 C -0.13 -4.87 6.52 31.67 0.21 -4.66 16 12 C -0.09 -4.26 5.61 31.88 0.18 -4.08 16 13 C 0.04 1.94 2.79 -10.47 -0.03 1.91 16 14 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 15 C -0.53 -28.48 8.49 25.60 0.22 -28.27 16 16 H 0.06 2.97 7.58 -2.91 -0.02 2.95 16 17 C 0.01 0.66 5.33 84.65 0.45 1.11 16 18 N -0.92 -52.83 12.01 21.45 0.26 -52.58 16 19 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 C -0.11 -4.19 6.13 31.32 0.19 -4.00 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.06 1.64 5.88 -2.39 -0.01 1.62 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.41 10.97 8.41 -92.71 -0.78 10.19 16 34 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.06 2.32 8.05 -2.39 -0.02 2.31 16 36 H 0.04 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.04 2.30 7.37 -2.38 -0.02 2.28 16 38 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.07 2.46 7.60 -2.39 -0.02 2.44 16 40 H 0.07 2.61 7.68 -2.39 -0.02 2.59 16 Total: -1.00 -62.44 317.96 3.57 -58.87 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.24 Total: 19.91 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 4.24 Total: -15.25 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.61 Total: -76.79 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.32 Total: -31.99 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -62.44 3.57 -58.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144077394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.018 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds