Wall clock time and date at job start Mon Mar 30 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46925 * 2 1 4 4 C 1.52997 * 109.47103 * 239.99493 * 2 1 3 5 5 O 1.45201 * 109.46785 * 119.99718 * 2 1 3 6 6 C 1.34636 * 116.99919 * 60.00223 * 5 2 1 7 7 O 1.21510 * 120.00135 * 359.97438 * 6 5 2 8 8 N 1.34774 * 119.99595 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99782 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.43608 * 32.46011 * 9 8 6 11 11 C 1.54890 * 110.60086 * 269.84246 * 9 8 6 12 12 C 1.54962 * 102.77993 * 203.35189 * 11 9 8 13 13 C 1.54266 * 104.16008 * 37.88379 * 12 11 9 14 14 H 1.09003 * 110.03266 * 95.76115 * 13 12 11 15 15 C 1.50706 * 110.03104 * 217.13706 * 13 12 11 16 16 H 1.08005 * 119.99758 * 117.91063 * 15 13 12 17 17 C 1.37871 * 120.00102 * 297.90948 * 15 13 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.53867 * 106.64256 * 336.44808 * 13 12 11 24 24 H 1.09005 * 109.47161 * 300.00578 * 1 2 3 25 25 H 1.09003 * 109.47398 * 60.00220 * 1 2 3 26 26 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46900 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47428 * 299.99549 * 3 2 1 29 29 H 1.08998 * 109.47366 * 59.99968 * 3 2 1 30 30 H 1.08998 * 109.47363 * 300.00140 * 4 2 1 31 31 H 1.09000 * 109.46932 * 60.00645 * 4 2 1 32 32 H 1.09002 * 109.46657 * 179.97438 * 4 2 1 33 33 H 0.96995 * 120.00913 * 0.02562 * 8 6 5 34 34 H 1.09007 * 110.75565 * 321.63594 * 11 9 8 35 35 H 1.08991 * 110.75848 * 85.00650 * 11 9 8 36 36 H 1.09003 * 110.47636 * 279.23041 * 12 11 9 37 37 H 1.08996 * 110.53471 * 156.56523 * 12 11 9 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 39 39 H 1.08998 * 110.03382 * 119.26049 * 23 13 12 40 40 H 1.08998 * 110.03401 * 240.64068 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0679 -2.6655 2.4168 9 6 1.6738 -4.0667 2.5833 10 1 1.5780 -4.5530 1.6126 11 6 0.3460 -4.1690 3.3743 12 6 0.4083 -5.6004 3.9649 13 6 1.8925 -5.7893 4.3408 14 1 2.0435 -5.5548 5.3945 15 6 2.3192 -7.2075 4.0617 16 1 3.0969 -7.4050 3.3388 17 6 1.7167 -8.2527 4.7292 18 7 0.7693 -8.0121 5.6091 19 14 2.2452 -10.0105 4.3826 20 1 1.4506 -10.9412 5.2239 21 1 2.0181 -10.3222 2.9486 22 1 3.6875 -10.1656 4.7006 23 6 2.6969 -4.8144 3.4632 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2493 33 1 2.6274 -2.2367 3.0830 34 1 0.3121 -3.4248 4.1700 35 1 -0.5098 -4.0628 2.7079 36 1 0.1076 -6.3346 3.2175 37 1 -0.2222 -5.6762 4.8507 38 1 0.4947 -7.0993 5.7887 39 1 3.2376 -4.1062 4.0909 40 1 3.3965 -5.3670 2.8361 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144077603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:30 Heat of formation + Delta-G solvation = -107.896560 kcal Electronic energy + Delta-G solvation = -19595.649391 eV Core-core repulsion = 16602.493105 eV Total energy + Delta-G solvation = -2993.156285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64521 -38.22041 -36.53140 -34.34306 -33.64487 -31.82773 -28.23068 -27.53993 -27.46313 -26.87230 -23.80357 -22.43932 -20.13182 -19.90188 -19.28096 -17.98610 -16.86959 -16.57897 -15.96012 -15.45311 -14.57064 -14.40432 -13.98898 -13.72572 -13.63121 -13.15098 -12.71843 -12.63982 -12.32838 -11.99316 -11.97618 -11.89935 -11.65115 -11.37286 -11.13001 -10.94878 -10.78692 -10.48262 -10.37820 -10.17733 -10.07138 -9.89081 -9.78561 -9.58919 -8.76805 -8.42571 -8.31763 -6.30649 -4.03796 2.34438 3.03754 3.45561 3.46918 3.65459 4.31099 4.55179 4.61581 4.65071 4.79972 5.25944 5.31553 5.40253 5.40851 5.48004 5.55013 5.56280 5.64185 5.72101 5.75754 5.83924 6.10061 6.14485 6.21166 6.28935 6.32189 6.46886 6.52896 6.59469 6.72070 6.83299 6.93853 7.12354 7.36552 7.61761 7.70685 8.24939 8.45253 8.59845 8.91321 9.67872 11.06813 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.049567 B = 0.004049 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.756393 B = 6914.394213 C = 7024.787201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.571 6.571 8 N -0.700 5.700 9 C 0.156 3.844 10 H 0.093 0.907 11 C -0.136 4.136 12 C -0.109 4.109 13 C 0.032 3.968 14 H 0.021 0.979 15 C -0.595 4.595 16 H 0.049 0.951 17 C 0.019 3.981 18 N -0.913 5.913 19 Si 1.065 2.935 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.289 1.289 23 C -0.112 4.112 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.401 0.599 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.272 0.728 39 H 0.048 0.952 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 16.655 -9.245 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.053 3.947 10 H 0.111 0.889 11 C -0.174 4.174 12 C -0.148 4.148 13 C 0.013 3.987 14 H 0.039 0.961 15 C -0.634 4.634 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.550 5.550 19 Si 0.894 3.106 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.229 14.861 -9.295 17.571 hybrid contribution 0.513 1.874 -0.187 1.952 sum 1.743 16.735 -9.482 19.313 Atomic orbital electron populations 1.22515 0.94125 1.05239 1.02185 1.21994 0.94322 0.91395 0.82401 1.21849 1.02151 0.92774 1.02919 1.22516 1.01461 1.03722 0.96369 1.86290 1.71830 1.24177 1.46216 1.18189 0.79059 0.80226 0.82632 1.90878 1.41270 1.70264 1.43608 1.45151 1.54677 1.13050 1.22860 1.22085 0.95391 0.76822 1.00359 0.88886 1.22955 0.96359 0.99432 0.98690 1.22574 0.99824 0.92784 0.99625 1.19367 0.90502 0.94629 0.94166 0.96082 1.22093 1.23450 0.91174 1.26641 0.93240 1.25763 0.94419 1.04657 0.93686 1.70800 1.27808 1.24284 1.32080 0.83590 0.75748 0.75242 0.76014 1.20862 1.21472 1.21552 1.22477 0.97335 0.97430 0.97749 0.92292 0.91374 0.89196 0.91570 0.90325 0.91576 0.89205 0.91371 0.92280 0.76430 0.92350 0.92489 0.91869 0.92857 0.91577 0.93320 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 2 C 0.14 1.58 1.13 -90.62 -0.10 1.48 16 3 C -0.14 -1.18 8.85 37.16 0.33 -0.85 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 5 O -0.37 -5.24 9.94 -40.31 -0.40 -5.64 16 6 C 0.65 10.55 8.06 54.05 0.44 10.98 16 7 O -0.57 -10.56 11.53 -19.28 -0.22 -10.78 16 8 N -0.70 -10.97 5.17 -57.11 -0.30 -11.27 16 9 C 0.16 2.85 3.22 -66.27 -0.21 2.64 16 10 H 0.09 1.86 7.55 -51.93 -0.39 1.47 16 11 C -0.14 -2.57 6.58 -24.70 -0.16 -2.73 16 12 C -0.11 -2.47 5.28 -25.03 -0.13 -2.61 16 13 C 0.03 0.77 2.50 -90.65 -0.23 0.55 16 14 H 0.02 0.54 7.99 -51.93 -0.42 0.12 16 15 C -0.60 -16.26 8.37 -34.44 -0.29 -16.55 16 16 H 0.05 1.34 7.33 -52.48 -0.38 0.96 16 17 C 0.02 0.54 5.32 -17.82 -0.09 0.44 16 18 N -0.91 -26.97 13.41 55.43 0.74 -26.22 16 19 Si 1.07 24.93 29.90 -169.99 -5.08 19.84 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.11 -2.21 6.18 -25.61 -0.16 -2.37 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.28 5.88 -51.93 -0.31 0.98 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 5.36 8.48 -40.82 -0.35 5.02 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.55 7.85 -51.93 -0.41 1.14 16 37 H 0.05 1.24 6.86 -51.93 -0.36 0.88 16 38 H 0.27 7.90 5.45 -40.82 -0.22 7.68 16 39 H 0.05 0.85 7.73 -51.93 -0.40 0.45 16 40 H 0.07 1.37 7.37 -51.93 -0.38 0.98 16 LS Contribution 315.15 15.07 4.75 4.75 Total: -1.00 -30.25 315.15 -7.02 -37.27 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.52 Total: 4.66 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 0.01 Total: -12.61 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.45 Total: -37.49 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.62 Total: -16.42 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.25 -7.02 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144077603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.625 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds