Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46653 * 2 1 4 4 C 1.53001 * 109.46653 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46741 * 185.19460 * 4 3 2 6 6 H 1.09003 * 109.47224 * 186.16934 * 5 4 3 7 7 C 1.50694 * 109.47323 * 306.17786 * 5 4 3 8 8 O 1.20822 * 120.00218 * 120.00085 * 7 5 4 9 9 O 1.34228 * 119.99732 * 299.99625 * 7 5 4 10 10 N 1.46900 * 109.46700 * 66.17809 * 5 4 3 11 11 C 1.46909 * 110.99873 * 172.61255 * 10 5 4 12 12 C 1.50700 * 109.47159 * 161.75767 * 11 10 5 13 13 H 1.08005 * 119.99765 * 354.39785 * 12 11 10 14 14 C 1.37875 * 119.99986 * 174.40505 * 12 11 10 15 15 N 1.31512 * 120.00018 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99841 * 179.72094 * 14 12 11 17 17 H 1.48501 * 109.47019 * 60.00146 * 16 14 12 18 18 H 1.48500 * 109.47067 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47544 * 299.99864 * 16 14 12 20 20 C 1.46900 * 111.00380 * 48.65644 * 10 5 4 21 21 C 1.52995 * 117.49988 * 261.51649 * 20 10 5 22 22 C 1.53005 * 117.49894 * 192.85237 * 20 10 5 23 23 H 1.08999 * 109.47419 * 299.99885 * 1 2 3 24 24 H 1.08991 * 109.47306 * 60.00569 * 1 2 3 25 25 H 1.09004 * 109.46493 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47419 * 240.00115 * 2 1 3 27 27 H 1.08999 * 109.47363 * 120.00085 * 2 1 3 28 28 H 1.08999 * 109.47115 * 59.99929 * 3 2 1 29 29 H 1.08998 * 109.46749 * 299.99357 * 3 2 1 30 30 H 1.09005 * 109.47299 * 65.19877 * 4 3 2 31 31 H 1.08999 * 109.47485 * 305.19991 * 4 3 2 32 32 H 0.96709 * 117.00196 * 180.02562 * 9 7 5 33 33 H 1.08993 * 109.46970 * 41.75503 * 11 10 5 34 34 H 1.09003 * 109.46657 * 281.75459 * 11 10 5 35 35 H 0.96998 * 120.00104 * 179.97438 * 15 14 12 36 36 H 1.09000 * 115.54688 * 47.18892 * 20 10 5 37 37 H 1.09003 * 117.50169 * 359.97438 * 21 20 10 38 38 H 1.08999 * 117.50230 * 145.02326 * 21 20 10 39 39 H 1.09000 * 117.49588 * 214.97827 * 22 20 10 40 40 H 1.08995 * 117.49570 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0798 2.8792 0.1313 6 1 5.1642 2.8913 0.0219 7 6 3.4570 3.7330 -0.9430 8 8 2.7788 4.6859 -0.6400 9 8 3.6557 3.4347 -2.2366 10 7 3.7150 3.4101 1.4515 11 6 4.3364 4.7212 1.6818 12 6 3.6157 5.4292 2.8000 13 1 2.7254 4.9940 3.2295 14 6 4.0928 6.6326 3.2746 15 7 5.1771 7.1622 2.7519 16 14 3.1951 7.5140 4.6554 17 1 3.1591 6.6430 5.8576 18 1 3.9054 8.7768 4.9807 19 1 1.8074 7.8226 4.2259 20 6 4.0724 2.4636 2.5166 21 6 2.9631 1.5622 3.0622 22 6 3.4967 2.7190 3.9111 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 3.9337 1.0114 -0.9320 31 1 3.9330 0.8504 0.8406 32 1 3.2361 4.0116 -2.8897 33 1 4.2721 5.3185 0.7724 34 1 5.3832 4.5843 1.9535 35 1 5.5126 8.0090 3.0855 36 1 5.0769 2.0449 2.4558 37 1 1.9679 1.6717 2.6312 38 1 3.2378 0.5506 3.3608 39 1 4.1223 2.4678 4.7676 40 1 2.8524 3.5890 4.0379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162077431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -86.996437 kcal Electronic energy + Delta-G solvation = -20355.096018 eV Core-core repulsion = 17362.846030 eV Total energy + Delta-G solvation = -2992.249988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52844 -39.37952 -37.00139 -36.47221 -35.28007 -34.43733 -31.92151 -28.78566 -27.28763 -24.81020 -23.72270 -23.05008 -22.32531 -22.07702 -20.32756 -18.80466 -18.57749 -17.52030 -16.90418 -16.59562 -16.54664 -16.21331 -15.54306 -15.11716 -14.67466 -14.44513 -13.95279 -13.90420 -13.81013 -13.55767 -13.13072 -12.98622 -12.73822 -12.54730 -12.44914 -12.32477 -11.96986 -11.80527 -11.76819 -11.47716 -11.43651 -11.29261 -11.09423 -10.92333 -10.66155 -10.43996 -9.04620 -8.13979 -6.18999 1.35849 1.38835 1.42874 1.49507 2.04673 2.42416 3.05665 3.18993 3.26916 3.77775 3.99760 4.16585 4.24186 4.31633 4.35143 4.41997 4.49287 4.58992 4.64722 4.80067 4.91218 4.96130 5.00089 5.11089 5.13871 5.16273 5.22993 5.24456 5.38573 5.40952 5.51810 5.53150 5.69823 5.71961 5.80546 6.11056 6.41416 6.56508 6.93100 7.14584 7.46447 8.97502 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.007243 C = 0.006214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.143595 B = 3864.890174 C = 4504.699227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.116 4.116 4 C -0.094 4.094 5 C 0.089 3.911 6 H 0.067 0.933 7 C 0.481 3.519 8 O -0.528 6.528 9 O -0.511 6.511 10 N -0.497 5.497 11 C 0.211 3.789 12 C -0.494 4.494 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.941 5.941 16 Si 0.960 3.040 17 H -0.261 1.261 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.006 3.994 21 C -0.141 4.141 22 C -0.174 4.174 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.422 0.578 33 H 0.001 0.999 34 H -0.036 1.036 35 H 0.260 0.740 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.096 0.904 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -16.378 -5.607 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.153 4.153 4 C -0.131 4.131 5 C -0.021 4.021 6 H 0.084 0.916 7 C 0.323 3.677 8 O -0.416 6.416 9 O -0.324 6.324 10 N -0.223 5.223 11 C 0.085 3.915 12 C -0.533 4.533 13 H 0.086 0.914 14 C -0.200 4.200 15 N -0.583 5.583 16 Si 0.786 3.214 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.102 4.102 21 C -0.178 4.178 22 C -0.212 4.212 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.283 0.717 33 H 0.019 0.981 34 H -0.018 1.018 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.733 -16.153 -5.230 17.626 hybrid contribution 0.549 1.796 0.011 1.878 sum -4.184 -14.357 -5.219 15.839 Atomic orbital electron populations 1.21768 0.96048 1.01918 1.01242 1.21462 0.95720 0.95161 1.02776 1.21625 0.94558 0.97926 1.01218 1.21646 0.96662 0.90560 1.04281 1.21302 0.97824 0.95382 0.87571 0.91564 1.23579 0.77715 0.83028 0.83361 1.90772 1.37942 1.29589 1.83299 1.84455 1.72160 1.59045 1.16740 1.61548 1.59304 1.02595 0.98822 1.19402 0.90829 0.85516 0.95747 1.21436 1.10452 1.04538 1.16842 0.91391 1.25839 0.96004 0.98280 0.99915 1.70085 1.24314 1.19595 1.44327 0.85569 0.78342 0.77838 0.79689 1.18584 1.21139 1.20165 1.22096 0.96147 0.99196 0.92736 1.23219 0.97958 0.95058 1.01546 1.23138 1.04189 1.00648 0.93177 0.93554 0.93544 0.91443 0.91156 0.90850 0.92170 0.94474 0.89051 0.88701 0.71746 0.98103 1.01805 0.93137 0.89969 0.88780 0.86189 0.88597 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.15 16 2 C -0.11 -2.17 5.93 30.60 0.18 -1.99 16 3 C -0.12 -3.01 4.28 30.60 0.13 -2.88 16 4 C -0.09 -2.40 4.43 30.60 0.14 -2.26 16 5 C 0.09 3.16 2.32 44.17 0.10 3.26 16 6 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 7 C 0.48 18.11 5.71 71.23 0.41 18.52 16 8 O -0.53 -25.27 15.39 21.98 0.34 -24.93 16 9 O -0.51 -14.04 13.35 -51.39 -0.69 -14.73 16 10 N -0.50 -21.24 3.59 -854.77 -3.07 -24.31 16 11 C 0.21 11.59 4.27 85.56 0.37 11.96 16 12 C -0.49 -28.74 7.80 25.60 0.20 -28.54 16 13 H 0.07 3.87 5.56 -2.91 -0.02 3.86 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 15 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 16 Si 0.96 46.19 29.54 68.60 2.03 48.21 16 17 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 C 0.01 0.23 3.50 44.92 0.16 0.39 16 21 C -0.14 -3.96 8.65 30.62 0.26 -3.70 16 22 C -0.17 -6.32 9.41 30.62 0.29 -6.03 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.90 5.28 -2.39 -0.01 1.89 16 29 H 0.04 1.05 7.26 -2.39 -0.02 1.04 16 30 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.09 2.17 6.06 -2.39 -0.01 2.16 16 32 H 0.42 8.05 9.10 -74.05 -0.67 7.38 16 33 H 0.00 0.06 5.97 -2.39 -0.01 0.05 16 34 H -0.04 -2.13 8.02 -2.39 -0.02 -2.14 16 35 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.09 2.77 6.10 -2.39 -0.01 2.76 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.09 3.72 5.29 -2.39 -0.01 3.71 16 Total: -1.00 -73.51 316.50 2.66 -70.85 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.36 Total: 16.81 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 3.41 Total: -13.18 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.79 Total: -83.02 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -0.35 Total: -39.66 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.51 2.66 -70.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162077431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.151 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds