Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.99932 * 2 1 4 4 C 1.54322 * 109.88276 * 121.10198 * 2 1 3 5 5 H 1.09002 * 110.71963 * 23.24341 * 4 2 1 6 6 C 1.50697 * 110.72075 * 260.14780 * 4 2 1 7 7 H 1.08007 * 119.99747 * 2.44364 * 6 4 2 8 8 C 1.37871 * 120.00110 * 182.43980 * 6 4 2 9 9 N 1.31513 * 120.00350 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99916 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47203 * 120.00200 * 10 8 6 13 13 H 1.48503 * 109.47053 * 239.99882 * 10 8 6 14 14 C 1.55164 * 102.94370 * 141.60851 * 4 2 1 15 15 C 1.54913 * 101.57873 * 324.49707 * 14 4 2 16 16 N 1.47026 * 109.87931 * 238.90957 * 2 1 3 17 17 C 1.34772 * 125.65294 * 61.67961 * 16 2 1 18 18 O 1.21520 * 119.99673 * 359.97438 * 17 16 2 19 19 O 1.34635 * 120.00293 * 180.02562 * 17 16 2 20 20 C 1.45198 * 117.00039 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47452 * 59.99852 * 20 19 17 22 22 C 1.52996 * 109.47227 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.47012 * 299.99975 * 20 19 17 24 24 H 1.09005 * 109.47029 * 298.90008 * 1 2 3 25 25 H 1.08999 * 109.47377 * 58.89961 * 1 2 3 26 26 H 1.08998 * 109.47566 * 178.89954 * 1 2 3 27 27 H 0.96999 * 120.00431 * 179.97438 * 9 8 6 28 28 H 1.09001 * 111.00154 * 82.56940 * 14 4 2 29 29 H 1.08998 * 111.00269 * 206.42257 * 14 4 2 30 30 H 1.08998 * 110.36487 * 278.17111 * 15 14 4 31 31 H 1.08997 * 110.45987 * 155.89565 * 15 14 4 32 32 H 1.09003 * 109.46969 * 59.99402 * 21 20 19 33 33 H 1.08995 * 109.47548 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.47321 * 300.00329 * 21 20 19 35 35 H 1.09006 * 109.47144 * 60.00215 * 22 20 19 36 36 H 1.09007 * 109.47321 * 179.97438 * 22 20 19 37 37 H 1.08999 * 109.47416 * 300.00057 * 22 20 19 38 38 H 1.08992 * 109.47348 * 60.00468 * 23 20 19 39 39 H 1.09011 * 109.46806 * 179.97438 * 23 20 19 40 40 H 1.08997 * 109.46964 * 299.99477 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 1.3050 -1.4461 1.6181 6 6 2.4629 0.2228 2.3191 7 1 2.3281 1.2837 2.1677 8 6 3.0083 -0.2418 3.4971 9 7 3.1728 -1.5335 3.6812 10 14 3.5135 0.9637 4.8317 11 1 3.2271 2.3495 4.3813 12 1 2.7489 0.6779 6.0722 13 1 4.9668 0.8221 5.1023 14 6 3.2876 -1.5144 0.6922 15 6 2.8144 -1.8794 -0.7370 16 7 2.0299 -0.7140 -1.1840 17 6 1.8084 -0.3611 -2.4658 18 8 1.1438 0.6243 -2.7185 19 8 2.3227 -1.1010 -3.4662 20 6 2.0432 -0.6619 -4.8217 21 6 2.5993 0.7488 -5.0258 22 6 2.7055 -1.6191 -5.8146 23 6 0.5308 -0.6523 -5.0530 24 1 -0.3633 0.4967 0.8997 25 1 -0.3634 0.5308 -0.8799 26 1 -0.3634 -1.0274 -0.0197 27 1 3.5568 -1.8603 4.5098 28 1 4.1654 -0.8690 0.6602 29 1 3.4851 -2.4112 1.2794 30 1 2.1885 -2.7715 -0.7131 31 1 3.6703 -2.0350 -1.3937 32 1 3.6768 0.7420 -4.8609 33 1 2.3891 1.0786 -6.0432 34 1 2.1279 1.4311 -4.3184 35 1 2.3096 -2.6244 -5.6694 36 1 2.4953 -1.2898 -6.8322 37 1 3.7829 -1.6256 -5.6497 38 1 0.0594 0.0300 -4.3457 39 1 0.3210 -0.3222 -6.0705 40 1 0.1347 -1.6573 -4.9077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211432790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = -92.360036 kcal Electronic energy + Delta-G solvation = -20156.321033 eV Core-core repulsion = 17163.838462 eV Total energy + Delta-G solvation = -2992.482571 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38323 -38.21539 -36.02119 -33.91696 -32.91021 -30.67116 -30.09519 -27.37147 -27.29864 -26.28258 -23.68864 -22.79215 -20.90534 -19.54235 -18.70651 -17.36975 -16.50782 -16.10549 -15.76924 -14.76224 -14.62077 -14.40315 -13.99642 -13.50527 -12.92748 -12.68691 -12.48247 -12.43366 -12.20211 -11.94815 -11.81256 -11.76641 -11.64315 -11.29452 -11.19627 -11.04216 -10.95885 -10.73449 -10.72636 -10.35112 -10.12616 -9.80204 -9.58987 -9.22053 -8.97634 -8.48880 -8.03175 -6.11186 -4.14350 2.59645 3.26447 3.34613 3.35204 3.39577 4.35345 4.41789 4.79899 4.82915 4.97766 5.22448 5.46481 5.55324 5.55921 5.67878 5.70083 5.77998 5.88073 5.92425 5.98448 6.00553 6.05427 6.19440 6.28189 6.37501 6.40453 6.43776 6.62701 6.80125 6.83238 7.02413 7.07520 7.14677 7.47083 7.70576 7.88475 8.18496 8.27569 8.84789 8.89001 9.50551 10.98709 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.005072 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.351961 B = 5519.393829 C = 5683.795020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.071 0.929 4 C 0.050 3.950 5 H 0.045 0.955 6 C -0.513 4.513 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.888 5.888 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.111 4.111 15 C 0.097 3.903 16 N -0.592 5.592 17 C 0.660 3.340 18 O -0.580 6.580 19 O -0.366 6.366 20 C 0.135 3.865 21 C -0.182 4.182 22 C -0.139 4.139 23 C -0.182 4.182 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 -1.214 -14.359 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.089 0.911 4 C 0.031 3.969 5 H 0.063 0.937 6 C -0.552 4.552 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.149 4.149 15 C -0.025 4.025 16 N -0.332 5.332 17 C 0.416 3.584 18 O -0.471 6.471 19 O -0.281 6.281 20 C 0.098 3.902 21 C -0.240 4.240 22 C -0.196 4.196 23 C -0.239 4.239 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.312 -1.030 -14.456 14.552 hybrid contribution 0.342 0.519 0.673 0.916 sum -0.970 -0.511 -13.783 13.826 Atomic orbital electron populations 1.22075 0.96069 1.01216 1.01860 1.22010 0.93280 0.96488 0.83090 0.91140 1.19797 0.93284 0.94472 0.89318 0.93743 1.21047 1.41572 0.92857 0.99695 0.92172 1.24933 0.95418 0.95154 0.98130 1.69948 1.44361 1.12312 1.25976 0.86516 0.78204 0.81472 0.81725 1.19679 1.20973 1.21010 1.22775 0.99896 1.01643 0.90606 1.22522 0.94168 0.87568 0.98290 1.47677 1.53606 1.29976 1.01895 1.17614 0.78743 0.81162 0.80930 1.90821 1.44432 1.28745 1.83066 1.86312 1.72070 1.54358 1.15371 1.21938 0.95664 0.94805 0.77814 1.22507 1.01507 0.96710 1.03228 1.21834 1.01346 0.99239 0.97200 1.22502 0.94914 1.03293 1.03184 0.91410 0.92690 0.93457 0.92917 0.92178 0.89771 0.92463 0.91942 0.92354 0.91630 0.89212 0.91646 0.90526 0.91608 0.89225 0.91627 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.09 37.15 0.34 -2.69 16 2 C 0.15 3.27 3.04 -66.95 -0.20 3.07 16 3 H 0.07 1.62 7.65 -51.93 -0.40 1.22 16 4 C 0.05 1.19 2.34 -89.94 -0.21 0.98 16 5 H 0.04 1.13 7.85 -51.93 -0.41 0.72 16 6 C -0.51 -13.42 8.49 -34.44 -0.29 -13.71 16 7 H 0.06 1.58 7.55 -52.48 -0.40 1.18 16 8 C 0.07 1.74 5.35 -17.82 -0.10 1.65 16 9 N -0.89 -24.17 12.31 55.43 0.68 -23.49 16 10 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 14 C -0.11 -2.42 5.86 -24.58 -0.14 -2.57 16 15 C 0.10 1.83 6.92 -2.52 -0.02 1.82 16 16 N -0.59 -11.96 3.06 -168.75 -0.52 -12.48 16 17 C 0.66 12.92 7.72 54.05 0.42 13.34 16 18 O -0.58 -11.94 10.93 -19.29 -0.21 -12.16 16 19 O -0.37 -6.28 9.41 -40.31 -0.38 -6.66 16 20 C 0.13 1.84 1.13 -90.62 -0.10 1.74 16 21 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 22 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 23 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.05 1.08 6.90 -51.93 -0.36 0.72 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 29 H 0.08 1.93 7.66 -51.93 -0.40 1.53 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 1.08 8.04 -51.93 -0.42 0.67 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.41 5.88 -51.93 -0.31 1.10 16 39 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -27.93 317.31 -6.79 -34.72 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.77 Total: 1.34 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 0.64 Total: -1.64 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.17 Total: -35.96 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.59 Total: -18.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.93 -6.79 -34.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211432790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.637 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds