Wall clock time and date at job start Mon Mar 30 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.99932 * 2 1 4 4 C 1.54322 * 109.88276 * 121.10198 * 2 1 3 5 5 H 1.09002 * 110.71963 * 23.24341 * 4 2 1 6 6 C 1.50697 * 110.72075 * 260.14780 * 4 2 1 7 7 H 1.08007 * 119.99747 * 2.44364 * 6 4 2 8 8 C 1.37871 * 120.00110 * 182.43980 * 6 4 2 9 9 N 1.31513 * 120.00350 * 0.02562 * 8 6 4 10 10 Si 1.86806 * 119.99916 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47113 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47203 * 120.00200 * 10 8 6 13 13 H 1.48503 * 109.47053 * 239.99882 * 10 8 6 14 14 C 1.55164 * 102.94370 * 141.60851 * 4 2 1 15 15 C 1.54913 * 101.57873 * 324.49707 * 14 4 2 16 16 N 1.47026 * 109.87931 * 238.90957 * 2 1 3 17 17 C 1.34772 * 125.65294 * 61.67961 * 16 2 1 18 18 O 1.21520 * 119.99673 * 359.97438 * 17 16 2 19 19 O 1.34635 * 120.00293 * 180.02562 * 17 16 2 20 20 C 1.45198 * 117.00039 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.47452 * 59.99852 * 20 19 17 22 22 C 1.52996 * 109.47227 * 179.97438 * 20 19 17 23 23 C 1.53003 * 109.47012 * 299.99975 * 20 19 17 24 24 H 1.09005 * 109.47029 * 298.90008 * 1 2 3 25 25 H 1.08999 * 109.47377 * 58.89961 * 1 2 3 26 26 H 1.08998 * 109.47566 * 178.89954 * 1 2 3 27 27 H 0.96999 * 120.00431 * 179.97438 * 9 8 6 28 28 H 1.09001 * 111.00154 * 82.56940 * 14 4 2 29 29 H 1.08998 * 111.00269 * 206.42257 * 14 4 2 30 30 H 1.08998 * 110.36487 * 278.17111 * 15 14 4 31 31 H 1.08997 * 110.45987 * 155.89565 * 15 14 4 32 32 H 1.09003 * 109.46969 * 59.99402 * 21 20 19 33 33 H 1.08995 * 109.47548 * 180.02562 * 21 20 19 34 34 H 1.09003 * 109.47321 * 300.00329 * 21 20 19 35 35 H 1.09006 * 109.47144 * 60.00215 * 22 20 19 36 36 H 1.09007 * 109.47321 * 179.97438 * 22 20 19 37 37 H 1.08999 * 109.47416 * 300.00057 * 22 20 19 38 38 H 1.08992 * 109.47348 * 60.00468 * 23 20 19 39 39 H 1.09011 * 109.46806 * 179.97438 * 23 20 19 40 40 H 1.08997 * 109.46964 * 299.99477 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 1.3050 -1.4461 1.6181 6 6 2.4629 0.2228 2.3191 7 1 2.3281 1.2837 2.1677 8 6 3.0083 -0.2418 3.4971 9 7 3.1728 -1.5335 3.6812 10 14 3.5135 0.9637 4.8317 11 1 3.2271 2.3495 4.3813 12 1 2.7489 0.6779 6.0722 13 1 4.9668 0.8221 5.1023 14 6 3.2876 -1.5144 0.6922 15 6 2.8144 -1.8794 -0.7370 16 7 2.0299 -0.7140 -1.1840 17 6 1.8084 -0.3611 -2.4658 18 8 1.1438 0.6243 -2.7185 19 8 2.3227 -1.1010 -3.4662 20 6 2.0432 -0.6619 -4.8217 21 6 2.5993 0.7488 -5.0258 22 6 2.7055 -1.6191 -5.8146 23 6 0.5308 -0.6523 -5.0530 24 1 -0.3633 0.4967 0.8997 25 1 -0.3634 0.5308 -0.8799 26 1 -0.3634 -1.0274 -0.0197 27 1 3.5568 -1.8603 4.5098 28 1 4.1654 -0.8690 0.6602 29 1 3.4851 -2.4112 1.2794 30 1 2.1885 -2.7715 -0.7131 31 1 3.6703 -2.0350 -1.3937 32 1 3.6768 0.7420 -4.8609 33 1 2.3891 1.0786 -6.0432 34 1 2.1279 1.4311 -4.3184 35 1 2.3096 -2.6244 -5.6694 36 1 2.4953 -1.2898 -6.8322 37 1 3.7829 -1.6256 -5.6497 38 1 0.0594 0.0300 -4.3457 39 1 0.3210 -0.3222 -6.0705 40 1 0.1347 -1.6573 -4.9077 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211432790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:40 Heat of formation + Delta-G solvation = -107.365332 kcal Electronic energy + Delta-G solvation = -20156.971711 eV Core-core repulsion = 17163.838462 eV Total energy + Delta-G solvation = -2993.133249 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81127 -39.76310 -37.49264 -35.26764 -34.68988 -32.35007 -31.84354 -28.32673 -28.25355 -28.12869 -25.43823 -24.37078 -22.44077 -21.15479 -20.15643 -19.07054 -18.12718 -17.54076 -17.23478 -16.52663 -16.22022 -15.76332 -15.23747 -14.76770 -14.55970 -14.32258 -14.04712 -13.77946 -13.44142 -13.28889 -13.05937 -12.94338 -12.87835 -12.82710 -12.81195 -12.59529 -12.52403 -12.36346 -12.16564 -12.14572 -11.61222 -11.33512 -11.17118 -10.93293 -10.89838 -10.49528 -9.64264 -8.14072 -6.22878 1.19179 1.42846 1.46487 1.56731 1.83030 2.44916 3.00367 3.18558 3.80497 3.84443 3.97869 3.99509 4.09116 4.32071 4.41263 4.55195 4.57774 4.61662 4.64676 4.70229 4.79278 4.82713 4.86408 4.91186 4.91814 5.13092 5.15152 5.26288 5.32027 5.34257 5.36342 5.44340 5.51814 5.59619 5.77037 5.89976 6.29732 6.62585 6.82989 7.36118 7.44700 8.95405 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.005072 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.351961 B = 5519.393829 C = 5683.795020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.159 3.841 3 H 0.050 0.950 4 C 0.048 3.952 5 H 0.025 0.975 6 C -0.531 4.531 7 H 0.052 0.948 8 C 0.024 3.976 9 N -0.912 5.912 10 Si 0.952 3.048 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C -0.102 4.102 15 C 0.108 3.892 16 N -0.600 5.600 17 C 0.661 3.339 18 O -0.593 6.593 19 O -0.369 6.369 20 C 0.119 3.881 21 C -0.179 4.179 22 C -0.133 4.133 23 C -0.178 4.178 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.929 -1.483 -16.005 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.057 3.943 3 H 0.069 0.931 4 C 0.029 3.971 5 H 0.043 0.957 6 C -0.569 4.569 7 H 0.071 0.929 8 C -0.176 4.176 9 N -0.550 5.550 10 Si 0.778 3.222 11 H -0.195 1.195 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.141 4.141 15 C -0.014 4.014 16 N -0.340 5.340 17 C 0.417 3.583 18 O -0.485 6.485 19 O -0.283 6.283 20 C 0.083 3.917 21 C -0.236 4.236 22 C -0.189 4.189 23 C -0.235 4.235 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.074 -1.305 -16.128 16.216 hybrid contribution 0.259 0.616 1.104 1.290 sum -0.815 -0.689 -15.024 15.062 Atomic orbital electron populations 1.21960 0.94703 1.01587 1.01860 1.21719 0.94294 0.95171 0.83091 0.93140 1.19684 0.93579 0.94085 0.89791 0.95652 1.21309 1.41765 0.92978 1.00825 0.92946 1.25594 0.95440 0.96617 0.99973 1.70035 1.44900 1.13572 1.26542 0.85601 0.77862 0.79523 0.79244 1.19531 1.20543 1.20627 1.22555 0.98599 1.00461 0.92479 1.22441 0.94937 0.87501 0.96471 1.47630 1.54063 1.30225 1.02098 1.17641 0.78537 0.81074 0.81077 1.90825 1.44966 1.29377 1.83362 1.86324 1.71626 1.54005 1.16394 1.22477 0.96595 0.96030 0.76567 1.22466 1.01096 0.95903 1.04133 1.21867 1.01086 0.98554 0.97434 1.22455 0.94222 1.02725 1.04076 0.91280 0.92723 0.92839 0.92774 0.93620 0.90999 0.91060 0.89941 0.92328 0.88587 0.92450 0.91255 0.87532 0.91411 0.92336 0.88651 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.09 71.98 0.65 -4.99 16 2 C 0.16 6.92 3.04 45.34 0.14 7.06 16 3 H 0.05 2.38 7.65 -2.39 -0.02 2.37 16 4 C 0.05 2.30 2.34 -10.35 -0.02 2.27 16 5 H 0.03 1.31 7.85 -2.39 -0.02 1.29 16 6 C -0.53 -28.22 8.49 25.60 0.22 -28.00 16 7 H 0.05 2.80 7.55 -2.91 -0.02 2.78 16 8 C 0.02 1.26 5.35 84.65 0.45 1.71 16 9 N -0.91 -50.04 12.31 21.44 0.26 -49.77 16 10 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 C -0.10 -4.52 5.86 31.99 0.19 -4.34 16 15 C 0.11 4.01 6.92 86.86 0.60 4.61 16 16 N -0.60 -24.05 3.06 -918.22 -2.81 -26.86 16 17 C 0.66 25.49 7.72 129.79 1.00 26.49 16 18 O -0.59 -24.50 10.93 19.78 0.22 -24.28 16 19 O -0.37 -12.09 9.41 -55.45 -0.52 -12.61 16 20 C 0.12 2.99 1.13 -10.79 -0.01 2.97 16 21 C -0.18 -4.41 8.37 71.98 0.60 -3.80 16 22 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 23 C -0.18 -4.25 8.37 71.98 0.60 -3.65 16 24 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 25 H 0.05 2.14 6.90 -2.39 -0.02 2.12 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 28 H 0.04 2.11 8.04 -2.39 -0.02 2.09 16 29 H 0.07 3.33 7.66 -2.39 -0.02 3.32 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 2.73 8.04 -2.39 -0.02 2.71 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 39 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -60.03 317.31 5.23 -54.81 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.00 Total: 15.58 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.06 Total: -1.27 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -2.55 Total: -76.63 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.31 Total: -36.89 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -60.03 5.23 -54.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211432790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.560 kcal (2) G-P(sol) polarization free energy of solvation -60.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds