Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99828 * 2 1 4 4 C 1.54342 * 109.77733 * 121.15966 * 2 1 3 5 5 H 1.08994 * 110.51319 * 215.81339 * 4 2 1 6 6 C 1.50699 * 110.84871 * 339.02998 * 4 2 1 7 7 H 1.07997 * 120.00124 * 358.92782 * 6 4 2 8 8 C 1.37875 * 119.99849 * 178.92222 * 6 4 2 9 9 N 1.31513 * 119.99916 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00059 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46976 * 60.00138 * 10 8 6 12 12 H 1.48500 * 109.47305 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47265 * 300.00541 * 10 8 6 14 14 C 1.55150 * 103.01904 * 97.49705 * 4 2 1 15 15 C 1.54908 * 101.58237 * 35.30945 * 14 4 2 16 16 N 1.47020 * 109.88745 * 238.89785 * 2 1 3 17 17 C 1.34777 * 125.64441 * 59.55934 * 16 2 1 18 18 O 1.21513 * 119.99894 * 359.72160 * 17 16 2 19 19 O 1.34638 * 120.00204 * 179.71742 * 17 16 2 20 20 C 1.45193 * 117.00254 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46937 * 60.00564 * 20 19 17 22 22 C 1.53000 * 109.47292 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.47489 * 300.00442 * 20 19 17 24 24 H 1.09000 * 109.47046 * 188.60968 * 1 2 3 25 25 H 1.09003 * 109.47892 * 308.61339 * 1 2 3 26 26 H 1.09001 * 109.46952 * 68.61322 * 1 2 3 27 27 H 0.97001 * 119.99491 * 179.97438 * 9 8 6 28 28 H 1.09003 * 111.01062 * 277.23251 * 14 4 2 29 29 H 1.09004 * 111.03666 * 153.39557 * 14 4 2 30 30 H 1.09008 * 110.36728 * 204.15417 * 15 14 4 31 31 H 1.08996 * 110.46452 * 81.87839 * 15 14 4 32 32 H 1.08992 * 109.47505 * 59.99405 * 21 20 19 33 33 H 1.08997 * 109.46998 * 180.02562 * 21 20 19 34 34 H 1.09007 * 109.46972 * 299.99584 * 21 20 19 35 35 H 1.09004 * 109.46721 * 60.00079 * 22 20 19 36 36 H 1.08997 * 109.47170 * 179.97438 * 22 20 19 37 37 H 1.08996 * 109.47405 * 300.00430 * 22 20 19 38 38 H 1.08997 * 109.47260 * 59.99922 * 23 20 19 39 39 H 1.09001 * 109.47303 * 180.02562 * 23 20 19 40 40 H 1.09004 * 109.46754 * 300.00061 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 1 2.9604 -0.2814 1.6198 6 6 0.9962 -0.8116 2.3163 7 1 0.0356 -0.3450 2.1555 8 6 1.2564 -1.4623 3.5036 9 7 2.4264 -2.0301 3.6996 10 14 -0.0522 -1.5362 4.8346 11 1 -1.2579 -2.2233 4.3057 12 1 0.4726 -2.2863 6.0038 13 1 -0.4118 -0.1573 5.2524 14 6 2.3561 -2.1696 0.6917 15 6 2.8613 -1.8466 -0.7366 16 7 2.0301 -0.7142 -1.1838 17 6 1.7754 -0.3847 -2.4656 18 8 1.0734 0.5744 -2.7184 19 8 2.2989 -1.1181 -3.4660 20 6 1.9821 -0.7054 -4.8215 21 6 2.4852 0.7212 -5.0510 22 6 2.6612 -1.6509 -5.8144 23 6 0.4668 -0.7512 -5.0277 24 1 -0.3633 -1.0161 0.1538 25 1 -0.3635 0.6413 0.8030 26 1 -0.3633 0.3748 -0.9569 27 1 2.6095 -2.4876 4.5351 28 1 1.4521 -2.7778 0.6581 29 1 3.1325 -2.6597 1.2792 30 1 2.7178 -2.7049 -1.3930 31 1 3.9125 -1.5595 -0.7131 32 1 3.5647 0.7539 -4.9041 33 1 2.2470 1.0312 -6.0685 34 1 2.0017 1.3952 -4.3437 35 1 2.3033 -2.6674 -5.6510 36 1 2.4230 -1.3413 -6.8320 37 1 3.7407 -1.6178 -5.6674 38 1 -0.0166 -0.0773 -4.3204 39 1 0.2290 -0.4418 -6.0454 40 1 0.1085 -1.7676 -4.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211432923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -85.583395 kcal Electronic energy + Delta-G solvation = -20238.196212 eV Core-core repulsion = 17246.007498 eV Total energy + Delta-G solvation = -2992.188714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39354 -38.27580 -36.04234 -33.93851 -32.90853 -30.69936 -30.00024 -27.36983 -27.29919 -25.78059 -24.20615 -22.75121 -21.03416 -19.39282 -18.69845 -17.24746 -16.25945 -16.10900 -15.80875 -14.76829 -14.63561 -14.48902 -14.03113 -13.60426 -13.04404 -12.73825 -12.47270 -12.43860 -12.09939 -11.83858 -11.79207 -11.65564 -11.54384 -11.43055 -11.15432 -10.96270 -10.92707 -10.90357 -10.53485 -10.18490 -10.02473 -9.77099 -9.50526 -9.24281 -8.85588 -8.46485 -8.02913 -6.08842 -4.10995 2.59769 3.29952 3.34666 3.34868 3.37779 4.36203 4.42707 4.79924 4.82950 4.97791 5.24835 5.46527 5.55547 5.56336 5.68233 5.70139 5.78092 5.92443 5.93049 5.98630 6.00323 6.13880 6.23650 6.36946 6.37525 6.40526 6.50809 6.69949 6.83545 6.99358 7.05030 7.14463 7.19780 7.46942 7.71323 7.91009 8.18636 8.30054 8.85800 8.90837 9.53734 11.01453 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.044039 B = 0.005140 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.642614 B = 5446.676220 C = 5722.472889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.153 3.847 3 H 0.057 0.943 4 C 0.049 3.951 5 H 0.042 0.958 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C -0.109 4.109 15 C 0.096 3.904 16 N -0.592 5.592 17 C 0.661 3.339 18 O -0.579 6.579 19 O -0.366 6.366 20 C 0.135 3.865 21 C -0.182 4.182 22 C -0.139 4.139 23 C -0.182 4.182 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.261 0.739 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.792 0.176 -14.417 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.052 3.948 3 H 0.075 0.925 4 C 0.030 3.970 5 H 0.060 0.940 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.147 4.147 15 C -0.026 4.026 16 N -0.331 5.331 17 C 0.416 3.584 18 O -0.470 6.470 19 O -0.281 6.281 20 C 0.098 3.902 21 C -0.239 4.239 22 C -0.196 4.196 23 C -0.239 4.239 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.679 0.375 -14.506 14.526 hybrid contribution -0.574 -0.149 0.690 0.910 sum 0.104 0.226 -13.816 13.818 Atomic orbital electron populations 1.22037 0.95307 1.02284 1.00438 1.21861 0.94745 0.94917 0.83249 0.92460 1.19777 0.97071 0.90702 0.89418 0.94030 1.21240 0.99974 1.35332 0.98943 0.91115 1.24972 0.95363 0.95258 0.98158 1.69942 1.21492 1.35772 1.25564 0.86650 0.81895 0.78219 0.81210 1.20248 1.21372 1.20215 1.22764 1.00889 1.00495 0.90575 1.22519 0.93940 0.87813 0.98341 1.47682 1.51445 1.32129 1.01882 1.17612 0.78991 0.80903 0.80913 1.90818 1.42667 1.30435 1.83059 1.86312 1.70583 1.55868 1.15372 1.21937 0.95510 0.94956 0.77813 1.22505 1.01655 0.96560 1.03196 1.21833 1.01209 0.99375 0.97204 1.22503 0.94879 1.03331 1.03210 0.92341 0.91481 0.93615 0.92907 0.92175 0.89899 0.91990 0.92422 0.92411 0.91624 0.89225 0.91623 0.90528 0.91638 0.89198 0.91640 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.93 37.16 0.29 -2.68 16 2 C 0.15 3.28 3.44 -66.95 -0.23 3.05 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 4 C 0.05 1.16 2.72 -89.93 -0.24 0.92 16 5 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 6 C -0.52 -13.23 7.69 -34.44 -0.26 -13.49 16 7 H 0.07 1.77 5.18 -52.49 -0.27 1.50 16 8 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 9 N -0.89 -24.19 12.40 55.43 0.69 -23.51 16 10 Si 0.89 20.51 29.54 -169.99 -5.02 15.48 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 C -0.11 -2.36 5.90 -24.59 -0.15 -2.51 16 15 C 0.10 1.82 6.92 -2.53 -0.02 1.80 16 16 N -0.59 -11.92 3.08 -168.75 -0.52 -12.44 16 17 C 0.66 12.90 7.70 54.06 0.42 13.32 16 18 O -0.58 -11.91 10.67 -19.28 -0.21 -12.12 16 19 O -0.37 -6.28 9.42 -40.32 -0.38 -6.66 16 20 C 0.14 1.84 1.13 -90.62 -0.10 1.74 16 21 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 22 C -0.14 -1.42 8.85 37.16 0.33 -1.10 16 23 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 24 H 0.06 1.26 7.71 -51.93 -0.40 0.86 16 25 H 0.07 1.37 6.73 -51.93 -0.35 1.02 16 26 H 0.04 0.94 6.49 -51.93 -0.34 0.61 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 28 H 0.06 1.36 8.04 -51.93 -0.42 0.94 16 29 H 0.08 1.89 7.71 -51.93 -0.40 1.49 16 30 H 0.06 1.08 8.04 -51.92 -0.42 0.66 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.41 5.88 -51.92 -0.31 1.11 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.44 5.88 -51.93 -0.31 1.13 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -27.68 312.21 -6.74 -34.42 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.57 Total: 1.62 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.56 Total: -1.51 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.17 Total: -35.94 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.59 Total: -18.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.68 -6.74 -34.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211432923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.166 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds