Wall clock time and date at job start Mon Mar 30 2020 06:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.99828 * 2 1 4 4 C 1.54342 * 109.77733 * 121.15966 * 2 1 3 5 5 H 1.08994 * 110.51319 * 215.81339 * 4 2 1 6 6 C 1.50699 * 110.84871 * 339.02998 * 4 2 1 7 7 H 1.07997 * 120.00124 * 358.92782 * 6 4 2 8 8 C 1.37875 * 119.99849 * 178.92222 * 6 4 2 9 9 N 1.31513 * 119.99916 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00059 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46976 * 60.00138 * 10 8 6 12 12 H 1.48500 * 109.47305 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47265 * 300.00541 * 10 8 6 14 14 C 1.55150 * 103.01904 * 97.49705 * 4 2 1 15 15 C 1.54908 * 101.58237 * 35.30945 * 14 4 2 16 16 N 1.47020 * 109.88745 * 238.89785 * 2 1 3 17 17 C 1.34777 * 125.64441 * 59.55934 * 16 2 1 18 18 O 1.21513 * 119.99894 * 359.72160 * 17 16 2 19 19 O 1.34638 * 120.00204 * 179.71742 * 17 16 2 20 20 C 1.45193 * 117.00254 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.46937 * 60.00564 * 20 19 17 22 22 C 1.53000 * 109.47292 * 179.97438 * 20 19 17 23 23 C 1.52999 * 109.47489 * 300.00442 * 20 19 17 24 24 H 1.09000 * 109.47046 * 188.60968 * 1 2 3 25 25 H 1.09003 * 109.47892 * 308.61339 * 1 2 3 26 26 H 1.09001 * 109.46952 * 68.61322 * 1 2 3 27 27 H 0.97001 * 119.99491 * 179.97438 * 9 8 6 28 28 H 1.09003 * 111.01062 * 277.23251 * 14 4 2 29 29 H 1.09004 * 111.03666 * 153.39557 * 14 4 2 30 30 H 1.09008 * 110.36728 * 204.15417 * 15 14 4 31 31 H 1.08996 * 110.46452 * 81.87839 * 15 14 4 32 32 H 1.08992 * 109.47505 * 59.99405 * 21 20 19 33 33 H 1.08997 * 109.46998 * 180.02562 * 21 20 19 34 34 H 1.09007 * 109.46972 * 299.99584 * 21 20 19 35 35 H 1.09004 * 109.46721 * 60.00079 * 22 20 19 36 36 H 1.08997 * 109.47170 * 179.97438 * 22 20 19 37 37 H 1.08996 * 109.47405 * 300.00430 * 22 20 19 38 38 H 1.08997 * 109.47260 * 59.99922 * 23 20 19 39 39 H 1.09001 * 109.47303 * 180.02562 * 23 20 19 40 40 H 1.09004 * 109.46754 * 300.00061 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2428 5 1 2.9604 -0.2814 1.6198 6 6 0.9962 -0.8116 2.3163 7 1 0.0356 -0.3450 2.1555 8 6 1.2564 -1.4623 3.5036 9 7 2.4264 -2.0301 3.6996 10 14 -0.0522 -1.5362 4.8346 11 1 -1.2579 -2.2233 4.3057 12 1 0.4726 -2.2863 6.0038 13 1 -0.4118 -0.1573 5.2524 14 6 2.3561 -2.1696 0.6917 15 6 2.8613 -1.8466 -0.7366 16 7 2.0301 -0.7142 -1.1838 17 6 1.7754 -0.3847 -2.4656 18 8 1.0734 0.5744 -2.7184 19 8 2.2989 -1.1181 -3.4660 20 6 1.9821 -0.7054 -4.8215 21 6 2.4852 0.7212 -5.0510 22 6 2.6612 -1.6509 -5.8144 23 6 0.4668 -0.7512 -5.0277 24 1 -0.3633 -1.0161 0.1538 25 1 -0.3635 0.6413 0.8030 26 1 -0.3633 0.3748 -0.9569 27 1 2.6095 -2.4876 4.5351 28 1 1.4521 -2.7778 0.6581 29 1 3.1325 -2.6597 1.2792 30 1 2.7178 -2.7049 -1.3930 31 1 3.9125 -1.5595 -0.7131 32 1 3.5647 0.7539 -4.9041 33 1 2.2470 1.0312 -6.0685 34 1 2.0017 1.3952 -4.3437 35 1 2.3033 -2.6674 -5.6510 36 1 2.4230 -1.3413 -6.8320 37 1 3.7407 -1.6178 -5.6674 38 1 -0.0166 -0.0773 -4.3204 39 1 0.2290 -0.4418 -6.0454 40 1 0.1085 -1.7676 -4.8641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211432923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:44 Heat of formation + Delta-G solvation = -100.433349 kcal Electronic energy + Delta-G solvation = -20238.840154 eV Core-core repulsion = 17246.007498 eV Total energy + Delta-G solvation = -2992.832656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82306 -39.82794 -37.50541 -35.29739 -34.64006 -32.44248 -31.72416 -28.32378 -28.25052 -27.63656 -25.97707 -24.33541 -22.53240 -20.99686 -20.18009 -18.76956 -18.08557 -17.49227 -17.27996 -16.55350 -16.05742 -16.01023 -15.32661 -14.89810 -14.47070 -14.39554 -14.17386 -13.51548 -13.30931 -13.29207 -13.09964 -12.97732 -12.85231 -12.82149 -12.75749 -12.71683 -12.40746 -12.26974 -12.13055 -11.92092 -11.56661 -11.33297 -11.14674 -10.90055 -10.77792 -10.45469 -9.64072 -8.09746 -6.16636 1.19645 1.47745 1.48489 1.55247 1.83471 2.47750 3.00869 3.23523 3.80753 3.84686 3.99183 4.00973 4.08658 4.36638 4.41902 4.56097 4.59515 4.64960 4.65322 4.73758 4.79525 4.83007 4.86934 4.91360 5.02755 5.13936 5.18045 5.27566 5.32859 5.37061 5.41921 5.45634 5.53286 5.62549 5.81721 5.91713 6.33861 6.63060 6.88959 7.36656 7.50501 9.00102 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.044039 B = 0.005140 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.642614 B = 5446.676220 C = 5722.472889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.158 3.842 3 H 0.052 0.948 4 C 0.045 3.955 5 H 0.017 0.983 6 C -0.528 4.528 7 H 0.073 0.927 8 C 0.020 3.980 9 N -0.917 5.917 10 Si 0.950 3.050 11 H -0.273 1.273 12 H -0.288 1.288 13 H -0.273 1.273 14 C -0.098 4.098 15 C 0.107 3.893 16 N -0.600 5.600 17 C 0.661 3.339 18 O -0.592 6.592 19 O -0.369 6.369 20 C 0.120 3.880 21 C -0.178 4.178 22 C -0.133 4.133 23 C -0.178 4.178 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.260 0.740 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 -0.173 -16.180 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.057 3.943 3 H 0.070 0.930 4 C 0.025 3.975 5 H 0.035 0.965 6 C -0.566 4.566 7 H 0.091 0.909 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.776 3.224 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.137 4.137 15 C -0.015 4.015 16 N -0.340 5.340 17 C 0.417 3.583 18 O -0.484 6.484 19 O -0.284 6.284 20 C 0.083 3.917 21 C -0.235 4.235 22 C -0.190 4.190 23 C -0.236 4.236 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.421 0.026 -16.297 16.302 hybrid contribution -0.482 -0.006 1.147 1.244 sum -0.061 0.020 -15.149 15.150 Atomic orbital electron populations 1.21892 0.94804 1.01616 1.00425 1.21623 0.94998 0.94479 0.83221 0.92965 1.19683 0.95712 0.91985 0.90072 0.96502 1.21562 1.00460 1.34909 0.99632 0.90867 1.25649 0.97068 0.95168 1.00105 1.70051 1.22955 1.36576 1.25977 0.85736 0.79679 0.78210 0.78766 1.19805 1.21351 1.19805 1.22525 0.99928 0.98960 0.92297 1.22439 0.94202 0.88199 0.96617 1.47626 1.51906 1.32353 1.02090 1.17636 0.78753 0.80849 0.81054 1.90822 1.43173 1.31067 1.83350 1.86324 1.70196 1.55474 1.16403 1.22474 0.96294 0.96324 0.76563 1.22460 1.01398 0.95568 1.04087 1.21866 1.01036 0.98602 0.97448 1.22460 0.94375 1.02589 1.04126 0.93272 0.91380 0.93556 0.93053 0.93375 0.91285 0.89969 0.91200 0.92166 0.88638 0.92358 0.91405 0.87539 0.91291 0.92353 0.88627 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 7.93 71.98 0.57 -4.83 16 2 C 0.16 6.83 3.44 45.35 0.16 6.99 16 3 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 4 C 0.04 2.14 2.72 -10.35 -0.03 2.11 16 5 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.53 -27.22 7.69 25.60 0.20 -27.02 16 7 H 0.07 3.67 5.18 -2.91 -0.02 3.66 16 8 C 0.02 1.03 5.35 84.65 0.45 1.48 16 9 N -0.92 -50.43 12.40 21.45 0.27 -50.17 16 10 Si 0.95 42.04 29.54 68.60 2.03 44.06 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 C -0.10 -4.31 5.90 31.98 0.19 -4.12 16 15 C 0.11 3.96 6.92 86.86 0.60 4.56 16 16 N -0.60 -23.87 3.08 -918.20 -2.83 -26.69 16 17 C 0.66 25.35 7.70 129.79 1.00 26.35 16 18 O -0.59 -24.26 10.67 19.80 0.21 -24.05 16 19 O -0.37 -12.06 9.42 -55.48 -0.52 -12.59 16 20 C 0.12 2.98 1.13 -10.79 -0.01 2.97 16 21 C -0.18 -4.27 8.37 71.98 0.60 -3.67 16 22 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 23 C -0.18 -4.35 8.37 71.98 0.60 -3.75 16 24 H 0.05 2.11 7.71 -2.39 -0.02 2.09 16 25 H 0.07 2.78 6.73 -2.39 -0.02 2.76 16 26 H 0.05 1.90 6.49 -2.39 -0.02 1.89 16 27 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 28 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 29 H 0.07 3.20 7.71 -2.39 -0.02 3.18 16 30 H 0.08 2.71 8.04 -2.38 -0.02 2.69 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 1.79 5.88 -2.38 -0.01 1.78 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.82 5.88 -2.39 -0.01 1.80 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -59.21 312.21 5.13 -54.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.01 Total: 15.91 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.97 Total: -0.55 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -2.56 Total: -76.86 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.31 Total: -36.64 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -59.21 5.13 -54.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211432923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.349 kcal (2) G-P(sol) polarization free energy of solvation -59.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds