Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.87307 * 2 1 4 4 C 1.54318 * 110.01081 * 238.90082 * 2 1 3 5 5 C 1.55160 * 102.94100 * 218.31813 * 4 2 1 6 6 H 1.08996 * 111.00195 * 277.42551 * 5 4 2 7 7 C 1.50705 * 110.99955 * 153.61533 * 5 4 2 8 8 H 1.08002 * 120.00464 * 359.97438 * 7 5 4 9 9 C 1.37882 * 119.99614 * 180.02562 * 7 5 4 10 10 N 1.31514 * 120.00058 * 180.02562 * 9 7 5 11 11 Si 1.86800 * 119.99969 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.46986 * 90.00383 * 11 9 7 13 13 H 1.48499 * 109.46800 * 210.00231 * 11 9 7 14 14 H 1.48500 * 109.47560 * 330.00496 * 11 9 7 15 15 C 1.54909 * 101.58106 * 35.50559 * 5 4 2 16 16 N 1.47026 * 109.87951 * 121.01468 * 2 1 3 17 17 C 1.34771 * 125.65100 * 298.24584 * 16 2 1 18 18 O 1.21511 * 120.00078 * 0.02562 * 17 16 2 19 19 O 1.34638 * 120.00154 * 180.02562 * 17 16 2 20 20 C 1.45200 * 116.99976 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47590 * 59.99696 * 20 19 17 22 22 C 1.53002 * 109.46766 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.46855 * 299.99284 * 20 19 17 24 24 H 1.09004 * 109.47015 * 300.44067 * 1 2 3 25 25 H 1.08999 * 109.46919 * 60.43556 * 1 2 3 26 26 H 1.08999 * 109.47504 * 180.43659 * 1 2 3 27 27 H 1.09003 * 110.72326 * 336.68190 * 4 2 1 28 28 H 1.09001 * 110.72286 * 99.77756 * 4 2 1 29 29 H 0.96997 * 120.00547 * 179.97438 * 10 9 7 30 30 H 1.08996 * 110.36158 * 204.14752 * 15 5 4 31 31 H 1.09002 * 110.36956 * 81.83034 * 15 5 4 32 32 H 1.09001 * 109.46652 * 59.99858 * 21 20 19 33 33 H 1.08995 * 109.47293 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47050 * 300.00485 * 21 20 19 35 35 H 1.09003 * 109.47376 * 59.99763 * 22 20 19 36 36 H 1.09004 * 109.46792 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.47281 * 299.99564 * 22 20 19 38 38 H 1.09004 * 109.46818 * 60.00736 * 23 20 19 39 39 H 1.09004 * 109.46989 * 180.02562 * 23 20 19 40 40 H 1.09001 * 109.47555 * 300.00814 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 3.2918 -1.5107 -0.6892 6 1 4.1681 -0.8634 -0.6565 7 6 3.5692 -2.7499 -1.5008 8 1 2.9379 -2.9976 -2.3414 9 6 4.6285 -3.5681 -1.1695 10 7 4.8709 -4.6493 -1.8780 11 14 5.7200 -3.1402 0.2848 12 1 5.1734 -3.7668 1.5152 13 1 7.0936 -3.6479 0.0389 14 1 5.7606 -1.6657 0.4563 15 6 2.8176 -1.8763 0.7394 16 7 2.0300 -0.7124 1.1850 17 6 1.8097 -0.3570 2.4662 18 8 1.1463 0.6294 2.7176 19 8 2.3247 -1.0950 3.4676 20 6 2.0465 -0.6533 4.8225 21 6 0.5343 -0.6428 5.0552 22 6 2.7084 -1.6096 5.8167 23 6 2.6032 0.7575 5.0233 24 1 -0.3633 0.5207 0.8860 25 1 -0.3633 0.5071 -0.8939 26 1 -0.3634 -1.0276 0.0078 27 1 1.3104 -1.4472 -1.6178 28 1 2.3528 -0.0453 -2.0201 29 1 5.6163 -5.2247 -1.6452 30 1 3.6741 -2.0286 1.3960 31 1 2.1937 -2.7698 0.7151 32 1 0.1378 -1.6480 4.9121 33 1 0.3256 -0.3117 6.0724 34 1 0.0624 0.0381 4.3469 35 1 3.7857 -1.6175 5.6511 36 1 2.4999 -1.2777 6.8338 37 1 2.3114 -2.6146 5.6735 38 1 2.1313 1.4386 4.3151 39 1 2.3948 1.0890 6.0406 40 1 3.6805 0.7501 4.8575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211433016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -87.568044 kcal Electronic energy + Delta-G solvation = -20381.912609 eV Core-core repulsion = 17389.637834 eV Total energy + Delta-G solvation = -2992.274775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.48650 -38.42544 -36.15573 -33.92385 -33.00423 -31.06961 -30.66416 -27.36999 -27.32920 -25.71852 -24.82702 -22.89238 -20.54713 -19.71291 -18.91771 -17.39771 -16.80367 -16.41802 -15.89473 -15.18395 -14.60543 -14.20857 -13.87999 -13.64916 -13.30849 -12.95541 -12.72132 -12.53353 -12.44719 -12.07899 -11.99773 -11.83430 -11.78198 -11.63930 -11.40318 -11.20397 -11.01929 -10.95083 -10.47143 -10.37025 -10.17514 -9.80480 -9.70475 -9.58302 -9.21141 -8.66785 -8.18277 -6.18406 -4.20160 2.49616 3.22885 3.23563 3.32406 3.34493 4.28739 4.33574 4.78282 4.82011 4.95995 5.08264 5.25292 5.43929 5.47076 5.53386 5.54547 5.67975 5.70289 5.77600 5.80478 5.89716 5.97362 6.00227 6.07752 6.17402 6.33178 6.36989 6.40919 6.43319 6.58652 6.70470 6.71389 6.82247 6.87891 7.29951 7.59690 8.02839 8.39786 8.74654 8.85693 9.42561 10.93928 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.007779 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.766542 B = 3598.516716 C = 4579.093843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.151 3.849 3 H 0.069 0.931 4 C -0.112 4.112 5 C 0.007 3.993 6 H 0.044 0.956 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.076 3.924 10 N -0.894 5.894 11 Si 0.869 3.131 12 H -0.273 1.273 13 H -0.288 1.288 14 H -0.263 1.263 15 C 0.094 3.906 16 N -0.596 5.596 17 C 0.663 3.337 18 O -0.583 6.583 19 O -0.361 6.361 20 C 0.134 3.866 21 C -0.181 4.181 22 C -0.141 4.141 23 C -0.182 4.182 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.266 0.734 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 7.952 11.632 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.013 4.013 6 H 0.062 0.938 7 C -0.548 4.548 8 H 0.098 0.902 9 C -0.127 4.127 10 N -0.531 5.531 11 Si 0.697 3.303 12 H -0.198 1.198 13 H -0.215 1.215 14 H -0.188 1.188 15 C -0.028 4.028 16 N -0.335 5.335 17 C 0.418 3.582 18 O -0.475 6.475 19 O -0.276 6.276 20 C 0.096 3.904 21 C -0.238 4.238 22 C -0.198 4.198 23 C -0.239 4.239 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.748 8.087 11.843 15.450 hybrid contribution 0.710 -0.001 0.950 1.186 sum -5.038 8.086 12.793 15.951 Atomic orbital electron populations 1.22159 0.95312 1.02219 1.02228 1.21595 0.93898 0.95656 0.83891 0.91294 1.22686 0.99251 0.98726 0.94357 1.20385 0.93681 0.96940 0.90281 0.93799 1.20854 1.13941 1.05574 1.14450 0.90202 1.25008 0.96913 0.94654 0.96143 1.69877 1.29920 1.13756 1.39531 0.87040 0.80294 0.79575 0.83395 1.19850 1.21489 1.18804 1.23242 0.93893 0.87284 0.98372 1.47622 1.53812 1.30520 1.01583 1.17590 0.78519 0.81025 0.81016 1.90806 1.44653 1.28722 1.83283 1.86364 1.71774 1.54108 1.15378 1.21988 0.95786 0.94841 0.77735 1.22492 0.94788 1.03349 1.03149 1.21848 1.01486 0.99367 0.97092 1.22504 1.01532 0.96602 1.03240 0.91750 0.91816 0.92478 0.90524 0.90862 0.92415 0.92401 0.90951 0.92305 0.91556 0.89321 0.91559 0.90418 0.91473 0.89300 0.91528 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.12 37.16 0.34 -2.15 16 2 C 0.15 2.66 3.45 -66.95 -0.23 2.43 16 3 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.11 -2.07 5.92 -24.90 -0.15 -2.22 16 5 C 0.01 0.15 2.39 -89.62 -0.21 -0.06 16 6 H 0.04 1.01 6.99 -51.93 -0.36 0.65 16 7 C -0.51 -13.46 9.08 -34.44 -0.31 -13.77 16 8 H 0.08 2.26 8.01 -52.49 -0.42 1.84 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 11 Si 0.87 20.91 24.91 -169.99 -4.23 16.68 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.15 6.44 56.52 0.36 -5.79 16 15 C 0.09 2.02 5.47 -2.53 -0.01 2.01 16 16 N -0.60 -11.76 3.06 -168.76 -0.52 -12.27 16 17 C 0.66 12.87 7.72 54.05 0.42 13.29 16 18 O -0.58 -11.34 10.92 -19.28 -0.21 -11.55 16 19 O -0.36 -6.64 9.41 -40.32 -0.38 -7.02 16 20 C 0.13 1.91 1.13 -90.62 -0.10 1.81 16 21 C -0.18 -2.37 8.37 37.16 0.31 -2.06 16 22 C -0.14 -1.61 8.85 37.16 0.33 -1.29 16 23 C -0.18 -2.43 8.37 37.16 0.31 -2.12 16 24 H 0.06 1.05 6.89 -51.93 -0.36 0.69 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 1.29 5.47 -51.93 -0.28 1.01 16 31 H 0.07 1.60 8.03 -51.93 -0.42 1.18 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -29.34 311.00 -5.97 -35.31 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.68 Total: 1.76 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.59 Total: -2.15 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.26 Total: -37.72 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.59 Total: -18.57 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.23 Total: 16.68 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.34 -5.97 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.260 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds