Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.87307 * 2 1 4 4 C 1.54318 * 110.01081 * 238.90082 * 2 1 3 5 5 C 1.55160 * 102.94100 * 218.31813 * 4 2 1 6 6 H 1.08996 * 111.00195 * 277.42551 * 5 4 2 7 7 C 1.50705 * 110.99955 * 153.61533 * 5 4 2 8 8 H 1.08002 * 120.00464 * 359.97438 * 7 5 4 9 9 C 1.37882 * 119.99614 * 180.02562 * 7 5 4 10 10 N 1.31514 * 120.00058 * 180.02562 * 9 7 5 11 11 Si 1.86800 * 119.99969 * 359.97438 * 9 7 5 12 12 H 1.48501 * 109.46986 * 90.00383 * 11 9 7 13 13 H 1.48499 * 109.46800 * 210.00231 * 11 9 7 14 14 H 1.48500 * 109.47560 * 330.00496 * 11 9 7 15 15 C 1.54909 * 101.58106 * 35.50559 * 5 4 2 16 16 N 1.47026 * 109.87951 * 121.01468 * 2 1 3 17 17 C 1.34771 * 125.65100 * 298.24584 * 16 2 1 18 18 O 1.21511 * 120.00078 * 0.02562 * 17 16 2 19 19 O 1.34638 * 120.00154 * 180.02562 * 17 16 2 20 20 C 1.45200 * 116.99976 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47590 * 59.99696 * 20 19 17 22 22 C 1.53002 * 109.46766 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.46855 * 299.99284 * 20 19 17 24 24 H 1.09004 * 109.47015 * 300.44067 * 1 2 3 25 25 H 1.08999 * 109.46919 * 60.43556 * 1 2 3 26 26 H 1.08999 * 109.47504 * 180.43659 * 1 2 3 27 27 H 1.09003 * 110.72326 * 336.68190 * 4 2 1 28 28 H 1.09001 * 110.72286 * 99.77756 * 4 2 1 29 29 H 0.96997 * 120.00547 * 179.97438 * 10 9 7 30 30 H 1.08996 * 110.36158 * 204.14752 * 15 5 4 31 31 H 1.09002 * 110.36956 * 81.83034 * 15 5 4 32 32 H 1.09001 * 109.46652 * 59.99858 * 21 20 19 33 33 H 1.08995 * 109.47293 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47050 * 300.00485 * 21 20 19 35 35 H 1.09003 * 109.47376 * 59.99763 * 22 20 19 36 36 H 1.09004 * 109.46792 * 179.97438 * 22 20 19 37 37 H 1.08995 * 109.47281 * 299.99564 * 22 20 19 38 38 H 1.09004 * 109.46818 * 60.00736 * 23 20 19 39 39 H 1.09004 * 109.46989 * 180.02562 * 23 20 19 40 40 H 1.09001 * 109.47555 * 300.00814 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0581 -0.7490 -1.2416 5 6 3.2918 -1.5107 -0.6892 6 1 4.1681 -0.8634 -0.6565 7 6 3.5692 -2.7499 -1.5008 8 1 2.9379 -2.9976 -2.3414 9 6 4.6285 -3.5681 -1.1695 10 7 4.8709 -4.6493 -1.8780 11 14 5.7200 -3.1402 0.2848 12 1 5.1734 -3.7668 1.5152 13 1 7.0936 -3.6479 0.0389 14 1 5.7606 -1.6657 0.4563 15 6 2.8176 -1.8763 0.7394 16 7 2.0300 -0.7124 1.1850 17 6 1.8097 -0.3570 2.4662 18 8 1.1463 0.6294 2.7176 19 8 2.3247 -1.0950 3.4676 20 6 2.0465 -0.6533 4.8225 21 6 0.5343 -0.6428 5.0552 22 6 2.7084 -1.6096 5.8167 23 6 2.6032 0.7575 5.0233 24 1 -0.3633 0.5207 0.8860 25 1 -0.3633 0.5071 -0.8939 26 1 -0.3634 -1.0276 0.0078 27 1 1.3104 -1.4472 -1.6178 28 1 2.3528 -0.0453 -2.0201 29 1 5.6163 -5.2247 -1.6452 30 1 3.6741 -2.0286 1.3960 31 1 2.1937 -2.7698 0.7151 32 1 0.1378 -1.6480 4.9121 33 1 0.3256 -0.3117 6.0724 34 1 0.0624 0.0381 4.3469 35 1 3.7857 -1.6175 5.6511 36 1 2.4999 -1.2777 6.8338 37 1 2.3114 -2.6146 5.6735 38 1 2.1313 1.4386 4.3151 39 1 2.3948 1.0890 6.0406 40 1 3.6805 0.7501 4.8575 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211433016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -105.335236 kcal Electronic energy + Delta-G solvation = -20382.683052 eV Core-core repulsion = 17389.637834 eV Total energy + Delta-G solvation = -2993.045218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88617 -39.88494 -37.57971 -35.18596 -34.92004 -32.56260 -32.39550 -28.35822 -28.31241 -27.39254 -26.54859 -24.33341 -22.06166 -21.29190 -20.29829 -19.01578 -18.63748 -17.79729 -17.28490 -16.52000 -16.41965 -15.49496 -15.25524 -15.05262 -14.75187 -14.65343 -14.31562 -14.02171 -13.51468 -13.33664 -13.18052 -13.04954 -12.92808 -12.88701 -12.85897 -12.80416 -12.42614 -12.28329 -12.11368 -12.02321 -11.56612 -11.39712 -11.29758 -11.24875 -10.99668 -10.75006 -9.72426 -8.31547 -6.36417 1.15229 1.32025 1.35832 1.43208 1.75564 2.30466 2.88849 3.04098 3.75051 3.79939 3.82143 3.87903 3.94730 4.11768 4.31198 4.43886 4.50837 4.61325 4.62795 4.64522 4.73734 4.74919 4.78642 4.83776 4.86094 4.92828 5.07823 5.11450 5.22653 5.27613 5.28858 5.32963 5.40020 5.48412 5.52857 5.63650 6.28380 6.50970 6.71521 7.28846 7.30111 8.84252 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.020801 B = 0.007779 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.766542 B = 3598.516716 C = 4579.093843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.149 3.851 3 H 0.079 0.921 4 C -0.104 4.104 5 C 0.002 3.998 6 H 0.042 0.958 7 C -0.507 4.507 8 H 0.049 0.951 9 C 0.025 3.975 10 N -0.940 5.940 11 Si 0.924 3.076 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.251 1.251 15 C 0.105 3.895 16 N -0.603 5.603 17 C 0.661 3.339 18 O -0.585 6.585 19 O -0.379 6.379 20 C 0.116 3.884 21 C -0.174 4.174 22 C -0.137 4.137 23 C -0.176 4.176 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.267 0.733 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 9.410 13.614 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.097 0.903 4 C -0.141 4.141 5 C -0.018 4.018 6 H 0.061 0.939 7 C -0.545 4.545 8 H 0.067 0.933 9 C -0.174 4.174 10 N -0.580 5.580 11 Si 0.750 3.250 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.175 1.175 15 C -0.017 4.017 16 N -0.343 5.343 17 C 0.417 3.583 18 O -0.477 6.477 19 O -0.294 6.294 20 C 0.080 3.920 21 C -0.232 4.232 22 C -0.194 4.194 23 C -0.233 4.233 24 H 0.074 0.926 25 H 0.110 0.890 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.069 9.573 13.840 17.889 hybrid contribution 0.736 -0.437 0.335 0.919 sum -5.333 9.136 14.175 17.687 Atomic orbital electron populations 1.22078 0.93593 1.02061 1.03193 1.21734 0.95252 0.95633 0.82571 0.90269 1.22635 0.97347 0.98773 0.95378 1.20294 0.95387 0.95512 0.90615 0.93947 1.21070 1.12910 1.06775 1.13761 0.93267 1.25730 0.98471 0.94553 0.98620 1.70002 1.31048 1.15238 1.41665 0.86147 0.78453 0.80007 0.80441 1.19234 1.21398 1.17487 1.22847 0.93649 0.87685 0.97541 1.47681 1.53984 1.30165 1.02475 1.17654 0.78487 0.81081 0.81084 1.90810 1.44719 1.28822 1.83352 1.86371 1.71751 1.54448 1.16840 1.22523 0.96953 0.96154 0.76338 1.22432 0.93755 1.02664 1.04309 1.21900 1.00916 0.98657 0.97889 1.22449 1.00934 0.95488 1.04434 0.92592 0.88999 0.93146 0.90805 0.88725 0.92348 0.93205 0.92178 0.92522 0.88430 0.91767 0.91915 0.87053 0.91733 0.91770 0.88368 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 9.12 71.98 0.66 -3.72 16 2 C 0.15 4.97 3.45 45.34 0.16 5.13 16 3 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.10 -3.68 5.92 31.78 0.19 -3.49 16 5 C 0.00 0.07 2.39 -10.15 -0.02 0.04 16 6 H 0.04 1.89 6.99 -2.39 -0.02 1.88 16 7 C -0.51 -27.11 9.08 25.60 0.23 -26.88 16 8 H 0.05 2.87 8.01 -2.91 -0.02 2.85 16 9 C 0.02 1.39 5.47 84.66 0.46 1.85 16 10 N -0.94 -56.40 13.96 21.45 0.30 -56.10 16 11 Si 0.92 43.14 24.91 68.60 1.71 44.85 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.25 -11.10 6.44 99.48 0.64 -10.46 16 15 C 0.11 4.48 5.47 86.85 0.47 4.96 16 16 N -0.60 -23.13 3.06 -918.24 -2.81 -25.95 16 17 C 0.66 24.98 7.72 129.79 1.00 25.98 16 18 O -0.59 -22.12 10.92 19.81 0.22 -21.91 16 19 O -0.38 -13.49 9.41 -55.47 -0.52 -14.02 16 20 C 0.12 3.08 1.13 -10.79 -0.01 3.07 16 21 C -0.17 -4.21 8.37 71.98 0.60 -3.61 16 22 C -0.14 -2.75 8.85 71.98 0.64 -2.11 16 23 C -0.18 -4.30 8.37 71.98 0.60 -3.70 16 24 H 0.06 1.73 6.89 -2.39 -0.02 1.71 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 2.66 7.73 -2.39 -0.02 2.64 16 28 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.05 2.18 5.47 -2.39 -0.01 2.17 16 31 H 0.06 2.67 8.03 -2.39 -0.02 2.65 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.88 5.88 -2.39 -0.01 1.87 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.90 5.88 -2.38 -0.01 1.89 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.75 311.00 4.80 -58.95 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.93 Total: 16.64 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.98 Total: -2.47 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.51 Total: -82.04 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.31 Total: -35.92 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.71 Total: 44.85 kcal Total: -63.75 4.80 -58.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.385 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds