Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.87320 * 2 1 4 4 C 1.54324 * 109.88473 * 121.01333 * 2 1 3 5 5 C 1.55163 * 102.94364 * 97.22362 * 4 2 1 6 6 H 1.09001 * 111.00072 * 277.39747 * 5 4 2 7 7 C 1.50697 * 111.00624 * 153.57519 * 5 4 2 8 8 H 1.08007 * 119.99844 * 356.03899 * 7 5 4 9 9 C 1.37873 * 120.00208 * 176.03533 * 7 5 4 10 10 N 1.31516 * 119.99834 * 353.81212 * 9 7 5 11 11 Si 1.86805 * 120.00248 * 173.80512 * 9 7 5 12 12 H 1.48499 * 109.47196 * 265.25110 * 11 9 7 13 13 H 1.48500 * 109.46936 * 145.24781 * 11 9 7 14 14 H 1.48496 * 109.46728 * 25.25123 * 11 9 7 15 15 C 1.54913 * 101.57819 * 35.50282 * 5 4 2 16 16 N 1.47023 * 109.88435 * 238.82134 * 2 1 3 17 17 C 1.34782 * 125.64608 * 59.57140 * 16 2 1 18 18 O 1.21508 * 119.99626 * 359.97438 * 17 16 2 19 19 O 1.34632 * 120.00060 * 180.02562 * 17 16 2 20 20 C 1.45194 * 117.00154 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47391 * 59.99470 * 20 19 17 22 22 C 1.53000 * 109.47356 * 180.02562 * 20 19 17 23 23 C 1.53008 * 109.47165 * 299.99809 * 20 19 17 24 24 H 1.09002 * 109.47364 * 298.98046 * 1 2 3 25 25 H 1.08995 * 109.47679 * 58.98459 * 1 2 3 26 26 H 1.09004 * 109.47151 * 178.98639 * 1 2 3 27 27 H 1.09001 * 110.72089 * 338.86229 * 4 2 1 28 28 H 1.08998 * 110.72494 * 215.58517 * 4 2 1 29 29 H 0.96998 * 119.99886 * 179.97438 * 10 9 7 30 30 H 1.09004 * 110.36687 * 81.83175 * 15 5 4 31 31 H 1.09001 * 110.36594 * 204.15229 * 15 5 4 32 32 H 1.08998 * 109.46735 * 60.00095 * 21 20 19 33 33 H 1.08997 * 109.47232 * 179.97438 * 21 20 19 34 34 H 1.08999 * 109.47152 * 300.00760 * 21 20 19 35 35 H 1.08994 * 109.47625 * 59.99534 * 22 20 19 36 36 H 1.08997 * 109.47001 * 179.97438 * 22 20 19 37 37 H 1.09007 * 109.46771 * 299.99596 * 22 20 19 38 38 H 1.08999 * 109.46741 * 59.99630 * 23 20 19 39 39 H 1.08997 * 109.47162 * 180.02562 * 23 20 19 40 40 H 1.09003 * 109.46682 * 300.00355 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3518 -2.1685 0.6955 6 1 1.4452 -2.7729 0.6649 7 6 3.4236 -2.8481 1.5083 8 1 3.9163 -2.3133 2.3069 9 6 3.7751 -4.1524 1.2325 10 7 3.0944 -4.8431 0.3441 11 14 5.2182 -4.9386 2.1206 12 1 6.4433 -4.8012 1.2927 13 1 4.9341 -6.3782 2.3491 14 1 5.4244 -4.2615 3.4260 15 6 2.8567 -1.8508 -0.7342 16 7 2.0300 -0.7158 -1.1829 17 6 1.7755 -0.3878 -2.4652 18 8 1.0774 0.5737 -2.7193 19 8 2.2938 -1.1263 -3.4645 20 6 1.9775 -0.7151 -4.8206 21 6 2.4876 0.7084 -5.0540 22 6 2.6493 -1.6672 -5.8121 23 6 0.4616 -0.7535 -5.0247 24 1 -0.3634 0.4979 0.8990 25 1 -0.3634 0.5295 -0.8807 26 1 -0.3634 -1.0275 -0.0182 27 1 1.2918 -0.7861 2.0212 28 1 2.9656 -0.2809 1.6186 29 1 3.3419 -5.7606 0.1498 30 1 3.9091 -1.5677 -0.7106 31 1 2.7087 -2.7100 -1.3884 32 1 3.5675 0.7358 -4.9086 33 1 2.2505 1.0169 -6.0722 34 1 2.0086 1.3864 -4.3476 35 1 2.2856 -2.6811 -5.6457 36 1 2.4115 -1.3587 -6.8301 37 1 3.7293 -1.6402 -5.6668 38 1 -0.0173 -0.0755 -4.3183 39 1 0.2242 -0.4452 -6.0429 40 1 0.0982 -1.7676 -4.8583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211433087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -93.359195 kcal Electronic energy + Delta-G solvation = -20256.842134 eV Core-core repulsion = 17264.316237 eV Total energy + Delta-G solvation = -2992.525898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30319 -38.21422 -35.97182 -33.77252 -33.00054 -30.90229 -29.99893 -27.25251 -27.21369 -25.37945 -24.74048 -22.88423 -20.67112 -19.47912 -18.70314 -17.18545 -16.45270 -16.14880 -15.63967 -14.85474 -14.42977 -14.33954 -14.00983 -13.56497 -13.03465 -12.61776 -12.41838 -12.30802 -12.16685 -12.01800 -11.75926 -11.70572 -11.62717 -11.42237 -11.20049 -11.10944 -11.02276 -10.87373 -10.54399 -10.36419 -10.02878 -9.86865 -9.51010 -9.23981 -9.07770 -8.53891 -7.94003 -6.13652 -4.17456 2.68738 3.26093 3.33974 3.36375 3.41749 4.34805 4.52213 4.90899 4.94325 5.08299 5.18518 5.41918 5.57798 5.61998 5.65268 5.73229 5.80758 5.81956 5.92294 6.01250 6.01835 6.12286 6.15898 6.31169 6.44486 6.45256 6.50225 6.62761 6.75066 6.85095 6.86750 6.92007 7.12383 7.28422 7.68547 7.85602 8.23776 8.30018 8.85492 8.95661 9.48106 10.96185 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.006425 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.597685 B = 4357.146337 C = 5184.502522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.063 0.937 4 C -0.126 4.126 5 C 0.047 3.953 6 H 0.048 0.952 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.066 3.934 10 N -0.885 5.885 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.111 3.889 16 N -0.596 5.596 17 C 0.663 3.337 18 O -0.590 6.590 19 O -0.358 6.358 20 C 0.134 3.866 21 C -0.181 4.181 22 C -0.140 4.140 23 C -0.181 4.181 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.263 0.737 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 7.151 -8.027 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 H 0.081 0.919 4 C -0.164 4.164 5 C 0.028 3.972 6 H 0.066 0.934 7 C -0.555 4.555 8 H 0.080 0.920 9 C -0.137 4.137 10 N -0.522 5.522 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.197 1.197 15 C -0.011 4.011 16 N -0.335 5.335 17 C 0.418 3.582 18 O -0.482 6.482 19 O -0.272 6.272 20 C 0.097 3.903 21 C -0.238 4.238 22 C -0.197 4.197 23 C -0.238 4.238 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.567 7.256 -8.345 11.353 hybrid contribution 0.835 -0.563 0.243 1.037 sum -1.731 6.693 -8.102 10.651 Atomic orbital electron populations 1.22155 0.95508 1.02338 1.01933 1.21493 0.93959 0.95059 0.84323 0.91930 1.22839 1.00237 0.98852 0.94441 1.19838 0.97569 0.90089 0.89703 0.93357 1.20993 1.20193 0.97241 1.17037 0.92024 1.25036 0.96482 0.97048 0.95161 1.69963 1.38762 1.10067 1.33435 0.86570 0.82807 0.78565 0.80054 1.20604 1.21208 1.19740 1.22882 0.93030 0.85815 0.99356 1.47702 1.51952 1.32570 1.01270 1.17592 0.78743 0.80692 0.81129 1.90786 1.43394 1.30652 1.83352 1.86380 1.70499 1.55168 1.15193 1.21943 0.95469 0.94891 0.77990 1.22497 1.01639 0.96640 1.03021 1.21833 1.01380 0.99497 0.96998 1.22499 0.94937 1.03391 1.03019 0.92189 0.91733 0.92362 0.91224 0.91501 0.92729 0.92668 0.90740 0.92418 0.91693 0.89351 0.91438 0.90617 0.91580 0.89348 0.91722 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.05 37.15 0.34 -2.42 16 2 C 0.15 2.89 3.49 -66.96 -0.23 2.65 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.13 -2.45 5.94 -24.89 -0.15 -2.60 16 5 C 0.05 1.12 2.77 -89.62 -0.25 0.87 16 6 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 7 C -0.52 -13.36 8.46 -34.44 -0.29 -13.65 16 8 H 0.06 1.56 7.75 -52.48 -0.41 1.16 16 9 C 0.07 1.74 5.38 -17.82 -0.10 1.65 16 10 N -0.89 -24.53 13.16 55.43 0.73 -23.80 16 11 Si 0.89 20.43 29.54 -169.99 -5.02 15.40 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 15 C 0.11 2.54 6.20 -2.53 -0.02 2.53 16 16 N -0.60 -12.47 3.08 -168.76 -0.52 -12.99 16 17 C 0.66 13.61 7.71 54.06 0.42 14.03 16 18 O -0.59 -12.11 10.79 -19.28 -0.21 -12.32 16 19 O -0.36 -6.94 9.42 -40.30 -0.38 -7.32 16 20 C 0.13 2.04 1.13 -90.61 -0.10 1.93 16 21 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 22 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 23 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 1.15 6.77 -51.93 -0.35 0.80 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 28 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.05 1.29 8.03 -51.93 -0.42 0.88 16 31 H 0.07 1.87 8.04 -51.93 -0.42 1.46 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.43 5.88 -51.93 -0.31 1.13 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -28.13 319.04 -6.83 -34.96 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.81 Total: 2.13 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 0.57 Total: -0.88 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.21 Total: -36.79 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.59 Total: -19.64 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.13 -6.83 -34.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.402 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds