Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.87320 * 2 1 4 4 C 1.54324 * 109.88473 * 121.01333 * 2 1 3 5 5 C 1.55163 * 102.94364 * 97.22362 * 4 2 1 6 6 H 1.09001 * 111.00072 * 277.39747 * 5 4 2 7 7 C 1.50697 * 111.00624 * 153.57519 * 5 4 2 8 8 H 1.08007 * 119.99844 * 356.03899 * 7 5 4 9 9 C 1.37873 * 120.00208 * 176.03533 * 7 5 4 10 10 N 1.31516 * 119.99834 * 353.81212 * 9 7 5 11 11 Si 1.86805 * 120.00248 * 173.80512 * 9 7 5 12 12 H 1.48499 * 109.47196 * 265.25110 * 11 9 7 13 13 H 1.48500 * 109.46936 * 145.24781 * 11 9 7 14 14 H 1.48496 * 109.46728 * 25.25123 * 11 9 7 15 15 C 1.54913 * 101.57819 * 35.50282 * 5 4 2 16 16 N 1.47023 * 109.88435 * 238.82134 * 2 1 3 17 17 C 1.34782 * 125.64608 * 59.57140 * 16 2 1 18 18 O 1.21508 * 119.99626 * 359.97438 * 17 16 2 19 19 O 1.34632 * 120.00060 * 180.02562 * 17 16 2 20 20 C 1.45194 * 117.00154 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47391 * 59.99470 * 20 19 17 22 22 C 1.53000 * 109.47356 * 180.02562 * 20 19 17 23 23 C 1.53008 * 109.47165 * 299.99809 * 20 19 17 24 24 H 1.09002 * 109.47364 * 298.98046 * 1 2 3 25 25 H 1.08995 * 109.47679 * 58.98459 * 1 2 3 26 26 H 1.09004 * 109.47151 * 178.98639 * 1 2 3 27 27 H 1.09001 * 110.72089 * 338.86229 * 4 2 1 28 28 H 1.08998 * 110.72494 * 215.58517 * 4 2 1 29 29 H 0.96998 * 119.99886 * 179.97438 * 10 9 7 30 30 H 1.09004 * 110.36687 * 81.83175 * 15 5 4 31 31 H 1.09001 * 110.36594 * 204.15229 * 15 5 4 32 32 H 1.08998 * 109.46735 * 60.00095 * 21 20 19 33 33 H 1.08997 * 109.47232 * 179.97438 * 21 20 19 34 34 H 1.08999 * 109.47152 * 300.00760 * 21 20 19 35 35 H 1.08994 * 109.47625 * 59.99534 * 22 20 19 36 36 H 1.08997 * 109.47001 * 179.97438 * 22 20 19 37 37 H 1.09007 * 109.46771 * 299.99596 * 22 20 19 38 38 H 1.08999 * 109.46741 * 59.99630 * 23 20 19 39 39 H 1.08997 * 109.47162 * 180.02562 * 23 20 19 40 40 H 1.09003 * 109.46682 * 300.00355 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 1.2438 5 6 2.3518 -2.1685 0.6955 6 1 1.4452 -2.7729 0.6649 7 6 3.4236 -2.8481 1.5083 8 1 3.9163 -2.3133 2.3069 9 6 3.7751 -4.1524 1.2325 10 7 3.0944 -4.8431 0.3441 11 14 5.2182 -4.9386 2.1206 12 1 6.4433 -4.8012 1.2927 13 1 4.9341 -6.3782 2.3491 14 1 5.4244 -4.2615 3.4260 15 6 2.8567 -1.8508 -0.7342 16 7 2.0300 -0.7158 -1.1829 17 6 1.7755 -0.3878 -2.4652 18 8 1.0774 0.5737 -2.7193 19 8 2.2938 -1.1263 -3.4645 20 6 1.9775 -0.7151 -4.8206 21 6 2.4876 0.7084 -5.0540 22 6 2.6493 -1.6672 -5.8121 23 6 0.4616 -0.7535 -5.0247 24 1 -0.3634 0.4979 0.8990 25 1 -0.3634 0.5295 -0.8807 26 1 -0.3634 -1.0275 -0.0182 27 1 1.2918 -0.7861 2.0212 28 1 2.9656 -0.2809 1.6186 29 1 3.3419 -5.7606 0.1498 30 1 3.9091 -1.5677 -0.7106 31 1 2.7087 -2.7100 -1.3884 32 1 3.5675 0.7358 -4.9086 33 1 2.2505 1.0169 -6.0722 34 1 2.0086 1.3864 -4.3476 35 1 2.2856 -2.6811 -5.6457 36 1 2.4115 -1.3587 -6.8301 37 1 3.7293 -1.6402 -5.6668 38 1 -0.0173 -0.0755 -4.3183 39 1 0.2242 -0.4452 -6.0429 40 1 0.0982 -1.7676 -4.8583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211433087.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -108.755947 kcal Electronic energy + Delta-G solvation = -20257.509787 eV Core-core repulsion = 17264.316237 eV Total energy + Delta-G solvation = -2993.193551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81310 -39.77498 -37.50317 -35.14242 -34.88361 -32.48212 -31.78313 -28.34140 -28.28986 -27.18025 -26.48662 -24.44227 -22.29994 -21.05159 -20.18782 -18.88661 -18.29527 -17.55727 -17.19449 -16.51326 -16.13885 -15.83300 -15.32869 -14.87771 -14.40648 -14.28256 -14.13244 -13.80617 -13.55409 -13.31693 -13.02914 -13.01353 -12.96215 -12.85694 -12.80053 -12.69382 -12.45423 -12.35543 -12.27194 -11.95761 -11.56506 -11.34694 -11.12116 -11.02291 -10.90148 -10.54586 -9.61900 -8.15753 -6.25719 1.24491 1.45316 1.47296 1.56914 1.81939 2.44418 2.99593 3.18778 3.78093 3.82390 3.89166 3.97269 4.12641 4.15437 4.45167 4.53971 4.61333 4.62712 4.70061 4.74809 4.76424 4.80602 4.83874 4.87746 5.04798 5.07777 5.09489 5.16047 5.29218 5.30364 5.35493 5.44785 5.48567 5.54350 5.72104 5.86369 6.28536 6.61849 6.85116 7.36986 7.43436 8.94166 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022822 B = 0.006425 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.597685 B = 4357.146337 C = 5184.502522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.113 4.113 5 C 0.041 3.959 6 H 0.016 0.984 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.017 3.983 10 N -0.919 5.919 11 Si 0.955 3.045 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.262 1.262 15 C 0.129 3.871 16 N -0.604 5.604 17 C 0.660 3.340 18 O -0.591 6.591 19 O -0.378 6.378 20 C 0.116 3.884 21 C -0.174 4.174 22 C -0.135 4.135 23 C -0.176 4.176 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 8.201 -8.358 11.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.048 3.952 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.022 3.978 6 H 0.034 0.966 7 C -0.565 4.565 8 H 0.085 0.915 9 C -0.183 4.183 10 N -0.558 5.558 11 Si 0.781 3.219 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.187 1.187 15 C 0.007 3.993 16 N -0.343 5.343 17 C 0.416 3.584 18 O -0.483 6.483 19 O -0.293 6.293 20 C 0.080 3.920 21 C -0.231 4.231 22 C -0.192 4.192 23 C -0.233 4.233 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.174 8.331 -8.680 12.226 hybrid contribution 0.670 -0.865 0.273 1.128 sum -1.504 7.466 -8.407 11.344 Atomic orbital electron populations 1.22080 0.94200 1.01548 1.03133 1.21672 0.95018 0.95345 0.83157 0.90399 1.22759 1.01286 0.95888 0.95159 1.19723 0.95733 0.92059 0.90295 0.96608 1.21348 1.20443 0.97565 1.17181 0.91518 1.25808 0.98801 0.97773 0.95938 1.70092 1.40353 1.10287 1.35026 0.85582 0.79607 0.77480 0.79261 1.20352 1.21281 1.18653 1.22421 0.92841 0.85585 0.98457 1.47775 1.52095 1.32222 1.02252 1.17678 0.78717 0.80780 0.81227 1.90784 1.43400 1.30710 1.83432 1.86390 1.70566 1.55521 1.16816 1.22503 0.96497 0.96514 0.76464 1.22429 1.01217 0.95150 1.04290 1.21880 1.00961 0.98474 0.97887 1.22445 0.94105 1.02366 1.04361 0.88949 0.92588 0.93995 0.89379 0.90651 0.92872 0.93439 0.93843 0.92472 0.88352 0.91852 0.92155 0.87009 0.91711 0.91860 0.88280 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.05 71.98 0.65 -4.37 16 2 C 0.15 5.46 3.49 45.34 0.16 5.62 16 3 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 4 C -0.11 -4.28 5.94 31.79 0.19 -4.10 16 5 C 0.04 1.99 2.77 -10.15 -0.03 1.96 16 6 H 0.02 0.85 8.10 -2.39 -0.02 0.83 16 7 C -0.53 -27.36 8.46 25.60 0.22 -27.15 16 8 H 0.07 3.32 7.75 -2.91 -0.02 3.30 16 9 C 0.02 0.89 5.38 84.65 0.46 1.34 16 10 N -0.92 -52.21 13.16 21.45 0.28 -51.93 16 11 Si 0.96 41.91 29.54 68.60 2.03 43.94 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 15 C 0.13 6.13 6.20 86.86 0.54 6.67 16 16 N -0.60 -25.53 3.08 -918.23 -2.83 -28.36 16 17 C 0.66 27.40 7.71 129.79 1.00 28.40 16 18 O -0.59 -24.25 10.79 19.82 0.21 -24.04 16 19 O -0.38 -14.87 9.42 -55.41 -0.52 -15.39 16 20 C 0.12 3.41 1.13 -10.79 -0.01 3.40 16 21 C -0.17 -4.57 8.37 71.98 0.60 -3.96 16 22 C -0.14 -3.06 8.85 71.98 0.64 -2.42 16 23 C -0.18 -4.83 8.37 71.98 0.60 -4.22 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 1.95 6.77 -2.39 -0.02 1.93 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.09 2.99 7.83 -2.39 -0.02 2.97 16 28 H 0.07 2.73 8.00 -2.39 -0.02 2.71 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.05 2.28 8.03 -2.39 -0.02 2.26 16 31 H 0.04 2.29 8.04 -2.39 -0.02 2.27 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.00 5.88 -2.39 -0.01 1.99 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 2.07 5.88 -2.39 -0.01 2.06 16 39 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.55 319.04 5.18 -56.38 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.99 Total: 18.23 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 5.01 Total: 1.17 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -2.55 Total: -80.29 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.31 Total: -39.43 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -61.55 5.18 -56.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433087.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.381 kcal (2) G-P(sol) polarization free energy of solvation -61.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds