Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87842 * 2 1 4 4 C 1.54326 * 110.01156 * 238.90397 * 2 1 3 5 5 C 1.55154 * 102.94329 * 262.70597 * 4 2 1 6 6 H 1.08992 * 111.03606 * 82.58388 * 5 4 2 7 7 C 1.50706 * 111.00073 * 206.42172 * 5 4 2 8 8 H 1.07995 * 120.00167 * 353.37105 * 7 5 4 9 9 C 1.37879 * 119.99394 * 173.64803 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47474 * 90.00322 * 11 9 7 13 13 H 1.48507 * 109.46754 * 210.00056 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99887 * 11 9 7 15 15 C 1.54909 * 101.58012 * 324.49405 * 5 4 2 16 16 N 1.47024 * 109.88458 * 121.02269 * 2 1 3 17 17 C 1.34777 * 125.64311 * 300.58986 * 16 2 1 18 18 O 1.21506 * 120.00569 * 0.02562 * 17 16 2 19 19 O 1.34640 * 119.99617 * 180.02562 * 17 16 2 20 20 C 1.45204 * 116.99772 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47207 * 59.99854 * 20 19 17 22 22 C 1.53003 * 109.46910 * 179.97438 * 20 19 17 23 23 C 1.52996 * 109.46766 * 299.99619 * 20 19 17 24 24 H 1.09002 * 109.46842 * 300.43399 * 1 2 3 25 25 H 1.09004 * 109.47236 * 60.43096 * 1 2 3 26 26 H 1.08994 * 109.47113 * 180.43536 * 1 2 3 27 27 H 1.08997 * 110.72146 * 144.33465 * 4 2 1 28 28 H 1.08999 * 110.71537 * 21.06952 * 4 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 30 30 H 1.09003 * 110.36235 * 155.85013 * 15 5 4 31 31 H 1.08999 * 110.36840 * 278.06220 * 15 5 4 32 32 H 1.09001 * 109.47336 * 60.00109 * 21 20 19 33 33 H 1.09005 * 109.46763 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47246 * 299.99769 * 21 20 19 35 35 H 1.09009 * 109.46830 * 59.99898 * 22 20 19 36 36 H 1.09001 * 109.46760 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.47370 * 299.99731 * 22 20 19 38 38 H 1.09002 * 109.47235 * 60.00508 * 23 20 19 39 39 H 1.09005 * 109.46935 * 180.02562 * 23 20 19 40 40 H 1.09000 * 109.47377 * 299.99734 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 2.3574 -2.1680 -0.6904 6 1 1.4524 -2.7746 -0.6593 7 6 3.4316 -2.8467 -1.5007 8 1 3.8034 -2.3817 -2.4017 9 6 3.9357 -4.0642 -1.0947 10 7 3.4787 -4.6333 -0.0007 11 14 5.2677 -4.9051 -2.0986 12 1 6.6022 -4.4710 -1.6129 13 1 5.1426 -6.3776 -1.9521 14 1 5.1173 -4.5354 -3.5290 15 6 2.8598 -1.8466 0.7392 16 7 2.0300 -0.7126 1.1848 17 6 1.7730 -0.3829 2.4661 18 8 1.0725 0.5775 2.7177 19 8 2.2925 -1.1179 3.4675 20 6 1.9734 -0.7050 4.8225 21 6 0.4575 -0.7476 5.0249 22 6 2.6470 -1.6531 5.8166 23 6 2.4789 0.7204 5.0536 24 1 -0.3633 0.5206 0.8861 25 1 -0.3634 0.5071 -0.8938 26 1 -0.3633 -1.0276 0.0078 27 1 2.9683 -0.2807 -1.6163 28 1 1.2961 -0.7903 -2.0200 29 1 3.8331 -5.4899 0.2847 30 1 2.7128 -2.7049 1.3948 31 1 3.9121 -1.5632 0.7168 32 1 0.0973 -1.7631 4.8602 33 1 0.2180 -0.4380 6.0423 34 1 -0.0228 -0.0724 4.3167 35 1 3.7271 -1.6231 5.6724 36 1 2.4078 -1.3428 6.8337 37 1 2.2865 -2.6685 5.6518 38 1 1.9987 1.3956 4.3454 39 1 2.2397 1.0303 6.0710 40 1 3.5589 0.7508 4.9095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211433162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -92.793270 kcal Electronic energy + Delta-G solvation = -20300.123659 eV Core-core repulsion = 17307.622302 eV Total energy + Delta-G solvation = -2992.501357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.26968 -38.19038 -35.94711 -33.73974 -33.01389 -30.88132 -29.93831 -27.22507 -27.19256 -25.36844 -24.71861 -22.86422 -20.65104 -19.45905 -18.67252 -17.14136 -16.41311 -16.11174 -15.60879 -14.79663 -14.46360 -14.32977 -13.99644 -13.53645 -13.01553 -12.59487 -12.39619 -12.27926 -12.16353 -12.00279 -11.73764 -11.67862 -11.60350 -11.38816 -11.17774 -11.08494 -10.98198 -10.88495 -10.55189 -10.36135 -9.99982 -9.83298 -9.49322 -9.24725 -9.02247 -8.54807 -7.89810 -6.12646 -4.17436 2.72518 3.26392 3.33784 3.36291 3.45055 4.35042 4.56047 4.93520 4.96972 5.10873 5.20833 5.43321 5.60112 5.62694 5.67321 5.72884 5.83240 5.84299 5.94695 6.02958 6.03573 6.14758 6.16047 6.31723 6.46679 6.47342 6.52158 6.65087 6.77360 6.88293 6.90625 6.97068 7.16984 7.38493 7.67166 7.87561 8.24478 8.33733 8.84046 8.99082 9.48428 10.96695 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.006541 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.522256 B = 4279.586846 C = 5155.271230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 H 0.062 0.938 4 C -0.126 4.126 5 C 0.048 3.952 6 H 0.039 0.961 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.116 3.884 16 N -0.597 5.597 17 C 0.663 3.337 18 O -0.591 6.591 19 O -0.356 6.356 20 C 0.134 3.866 21 C -0.181 4.181 22 C -0.140 4.140 23 C -0.181 4.181 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.263 0.737 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 6.754 7.457 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.080 0.920 4 C -0.164 4.164 5 C 0.029 3.971 6 H 0.057 0.943 7 C -0.555 4.555 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.524 5.524 11 Si 0.722 3.278 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.005 4.005 16 N -0.336 5.336 17 C 0.419 3.581 18 O -0.484 6.484 19 O -0.271 6.271 20 C 0.097 3.903 21 C -0.238 4.238 22 C -0.197 4.197 23 C -0.238 4.238 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.157 6.872 7.803 10.866 hybrid contribution 0.789 -0.570 -0.319 1.024 sum -2.368 6.303 7.483 10.066 Atomic orbital electron populations 1.22154 0.95548 1.02257 1.01964 1.21489 0.93903 0.95120 0.84361 0.91981 1.22828 1.00199 0.98863 0.94466 1.19816 0.97043 0.90008 0.90263 0.94288 1.20998 1.20871 1.04227 1.09425 0.91997 1.25028 0.96709 0.97018 0.95092 1.69934 1.42289 1.17407 1.22795 0.86550 0.82023 0.78627 0.80563 1.20603 1.21203 1.19813 1.22785 0.92743 0.85807 0.99180 1.47759 1.51812 1.32829 1.01240 1.17584 0.78753 0.80665 0.81140 1.90781 1.43385 1.30733 1.83454 1.86397 1.70314 1.55281 1.15105 1.21935 0.95413 0.94856 0.78095 1.22496 0.94980 1.03351 1.02997 1.21832 1.01396 0.99536 0.96931 1.22498 1.01667 0.96635 1.02997 0.91674 0.92234 0.92429 0.91393 0.91338 0.92703 0.89804 0.92770 0.92283 0.91754 0.89364 0.91576 0.90661 0.91426 0.89358 0.91728 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.07 37.15 0.34 -2.42 16 2 C 0.15 2.91 3.49 -66.95 -0.23 2.67 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.13 -2.46 5.94 -24.90 -0.15 -2.60 16 5 C 0.05 1.14 2.96 -89.62 -0.27 0.87 16 6 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.52 -13.39 8.55 -34.44 -0.29 -13.68 16 8 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 9 C 0.06 1.70 5.34 -17.82 -0.10 1.61 16 10 N -0.89 -24.40 12.06 55.43 0.67 -23.73 16 11 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.12 2.72 5.67 -2.53 -0.01 2.71 16 16 N -0.60 -12.67 3.08 -168.76 -0.52 -13.19 16 17 C 0.66 13.80 7.71 54.06 0.42 14.21 16 18 O -0.59 -12.26 10.77 -19.28 -0.21 -12.46 16 19 O -0.36 -7.03 9.42 -40.32 -0.38 -7.41 16 20 C 0.13 2.07 1.13 -90.62 -0.10 1.97 16 21 C -0.18 -2.62 8.37 37.15 0.31 -2.31 16 22 C -0.14 -1.75 8.85 37.16 0.33 -1.42 16 23 C -0.18 -2.57 8.37 37.16 0.31 -2.25 16 24 H 0.06 1.17 6.73 -51.93 -0.35 0.82 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 28 H 0.07 1.22 7.83 -51.93 -0.41 0.81 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.08 2.16 7.33 -51.93 -0.38 1.78 16 31 H 0.05 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.47 5.88 -51.93 -0.31 1.17 16 35 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 317.01 15.07 4.78 4.78 Total: -1.00 -28.01 317.01 -6.91 -34.92 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.78 Total: 2.34 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.55 Total: -0.66 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.15 Total: -36.92 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.59 Total: -19.88 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.01 -6.91 -34.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.875 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds