Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.87842 * 2 1 4 4 C 1.54326 * 110.01156 * 238.90397 * 2 1 3 5 5 C 1.55154 * 102.94329 * 262.70597 * 4 2 1 6 6 H 1.08992 * 111.03606 * 82.58388 * 5 4 2 7 7 C 1.50706 * 111.00073 * 206.42172 * 5 4 2 8 8 H 1.07995 * 120.00167 * 353.37105 * 7 5 4 9 9 C 1.37879 * 119.99394 * 173.64803 * 7 5 4 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47474 * 90.00322 * 11 9 7 13 13 H 1.48507 * 109.46754 * 210.00056 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99887 * 11 9 7 15 15 C 1.54909 * 101.58012 * 324.49405 * 5 4 2 16 16 N 1.47024 * 109.88458 * 121.02269 * 2 1 3 17 17 C 1.34777 * 125.64311 * 300.58986 * 16 2 1 18 18 O 1.21506 * 120.00569 * 0.02562 * 17 16 2 19 19 O 1.34640 * 119.99617 * 180.02562 * 17 16 2 20 20 C 1.45204 * 116.99772 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47207 * 59.99854 * 20 19 17 22 22 C 1.53003 * 109.46910 * 179.97438 * 20 19 17 23 23 C 1.52996 * 109.46766 * 299.99619 * 20 19 17 24 24 H 1.09002 * 109.46842 * 300.43399 * 1 2 3 25 25 H 1.09004 * 109.47236 * 60.43096 * 1 2 3 26 26 H 1.08994 * 109.47113 * 180.43536 * 1 2 3 27 27 H 1.08997 * 110.72146 * 144.33465 * 4 2 1 28 28 H 1.08999 * 110.71537 * 21.06952 * 4 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 30 30 H 1.09003 * 110.36235 * 155.85013 * 15 5 4 31 31 H 1.08999 * 110.36840 * 278.06220 * 15 5 4 32 32 H 1.09001 * 109.47336 * 60.00109 * 21 20 19 33 33 H 1.09005 * 109.46763 * 179.97438 * 21 20 19 34 34 H 1.09002 * 109.47246 * 299.99769 * 21 20 19 35 35 H 1.09009 * 109.46830 * 59.99898 * 22 20 19 36 36 H 1.09001 * 109.46760 * 179.97438 * 22 20 19 37 37 H 1.09001 * 109.47370 * 299.99731 * 22 20 19 38 38 H 1.09002 * 109.47235 * 60.00508 * 23 20 19 39 39 H 1.09005 * 109.46935 * 180.02562 * 23 20 19 40 40 H 1.09000 * 109.47377 * 299.99734 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 -1.2417 5 6 2.3574 -2.1680 -0.6904 6 1 1.4524 -2.7746 -0.6593 7 6 3.4316 -2.8467 -1.5007 8 1 3.8034 -2.3817 -2.4017 9 6 3.9357 -4.0642 -1.0947 10 7 3.4787 -4.6333 -0.0007 11 14 5.2677 -4.9051 -2.0986 12 1 6.6022 -4.4710 -1.6129 13 1 5.1426 -6.3776 -1.9521 14 1 5.1173 -4.5354 -3.5290 15 6 2.8598 -1.8466 0.7392 16 7 2.0300 -0.7126 1.1848 17 6 1.7730 -0.3829 2.4661 18 8 1.0725 0.5775 2.7177 19 8 2.2925 -1.1179 3.4675 20 6 1.9734 -0.7050 4.8225 21 6 0.4575 -0.7476 5.0249 22 6 2.6470 -1.6531 5.8166 23 6 2.4789 0.7204 5.0536 24 1 -0.3633 0.5206 0.8861 25 1 -0.3634 0.5071 -0.8938 26 1 -0.3633 -1.0276 0.0078 27 1 2.9683 -0.2807 -1.6163 28 1 1.2961 -0.7903 -2.0200 29 1 3.8331 -5.4899 0.2847 30 1 2.7128 -2.7049 1.3948 31 1 3.9121 -1.5632 0.7168 32 1 0.0973 -1.7631 4.8602 33 1 0.2180 -0.4380 6.0423 34 1 -0.0228 -0.0724 4.3167 35 1 3.7271 -1.6231 5.6724 36 1 2.4078 -1.3428 6.8337 37 1 2.2865 -2.6685 5.6518 38 1 1.9987 1.3956 4.3454 39 1 2.2397 1.0303 6.0710 40 1 3.5589 0.7508 4.9095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211433162.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -108.090370 kcal Electronic energy + Delta-G solvation = -20300.786991 eV Core-core repulsion = 17307.622302 eV Total energy + Delta-G solvation = -2993.164689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.80041 -39.76752 -37.49696 -35.13152 -34.89374 -32.47809 -31.72420 -28.33755 -28.28521 -27.18069 -26.46911 -24.43708 -22.29416 -21.04228 -20.17630 -18.85421 -18.26229 -17.54384 -17.18219 -16.46650 -16.18945 -15.83164 -15.32483 -14.86458 -14.40640 -14.26034 -14.11366 -13.82054 -13.54043 -13.31075 -13.01543 -12.98622 -12.94737 -12.84814 -12.77904 -12.70477 -12.45077 -12.36625 -12.27083 -11.96527 -11.53413 -11.33817 -11.11346 -11.01757 -10.87661 -10.55108 -9.60076 -8.14135 -6.25546 1.26535 1.45995 1.47421 1.56975 1.83058 2.44705 3.01611 3.20641 3.78633 3.82946 3.89647 3.97804 4.12462 4.15462 4.46086 4.54546 4.62885 4.63574 4.71235 4.75233 4.76712 4.81503 4.84230 4.88053 5.08535 5.09811 5.10958 5.17701 5.29918 5.31045 5.36047 5.46451 5.50623 5.56466 5.71705 5.88205 6.27947 6.64109 6.83474 7.38529 7.43890 8.94675 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.006541 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.522256 B = 4279.586846 C = 5155.271230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.113 4.113 5 C 0.041 3.959 6 H 0.011 0.989 7 C -0.530 4.530 8 H 0.067 0.933 9 C 0.016 3.984 10 N -0.918 5.918 11 Si 0.957 3.043 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.264 1.264 15 C 0.136 3.864 16 N -0.605 5.605 17 C 0.660 3.340 18 O -0.591 6.591 19 O -0.378 6.378 20 C 0.116 3.884 21 C -0.175 4.175 22 C -0.135 4.135 23 C -0.174 4.174 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 7.692 7.665 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.047 3.953 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.022 3.978 6 H 0.029 0.971 7 C -0.568 4.568 8 H 0.085 0.915 9 C -0.184 4.184 10 N -0.556 5.556 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.188 1.188 15 C 0.014 3.986 16 N -0.345 5.345 17 C 0.416 3.584 18 O -0.484 6.484 19 O -0.293 6.293 20 C 0.080 3.920 21 C -0.232 4.232 22 C -0.192 4.192 23 C -0.231 4.231 24 H 0.074 0.926 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.017 7.834 8.013 11.605 hybrid contribution 0.708 -0.840 -0.306 1.140 sum -2.309 6.994 7.706 10.660 Atomic orbital electron populations 1.22076 0.94070 1.01625 1.03140 1.21680 0.95090 0.95335 0.83179 0.90596 1.22749 1.01242 0.95852 0.95205 1.19727 0.95398 0.92054 0.90638 0.97083 1.21354 1.21158 1.04543 1.09718 0.91501 1.25804 0.98772 0.97820 0.96025 1.70071 1.43603 1.17673 1.24263 0.85562 0.79335 0.77323 0.79488 1.20277 1.21294 1.18814 1.22292 0.92202 0.85552 0.98536 1.47838 1.51931 1.32490 1.02260 1.17675 0.78736 0.80753 0.81240 1.90779 1.43367 1.30746 1.83527 1.86406 1.70417 1.55683 1.16769 1.22499 0.96517 0.96449 0.76538 1.22439 0.94049 1.02372 1.04361 1.21880 1.00906 0.98537 0.97866 1.22430 1.01189 0.95165 1.04300 0.92613 0.88907 0.93861 0.90746 0.89198 0.92873 0.92962 0.94257 0.92941 0.88274 0.91846 0.91824 0.86982 0.92150 0.91842 0.88324 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.07 71.98 0.65 -4.33 16 2 C 0.15 5.48 3.49 45.34 0.16 5.64 16 3 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 4 C -0.11 -4.28 5.94 31.78 0.19 -4.09 16 5 C 0.04 1.99 2.96 -10.15 -0.03 1.96 16 6 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 7 C -0.53 -27.54 8.55 25.60 0.22 -27.32 16 8 H 0.07 3.34 7.79 -2.91 -0.02 3.31 16 9 C 0.02 0.83 5.34 84.66 0.45 1.28 16 10 N -0.92 -51.75 12.06 21.45 0.26 -51.49 16 11 Si 0.96 41.94 29.54 68.60 2.03 43.96 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 15 C 0.14 6.61 5.67 86.86 0.49 7.11 16 16 N -0.61 -26.03 3.08 -918.23 -2.83 -28.86 16 17 C 0.66 27.83 7.71 129.79 1.00 28.83 16 18 O -0.59 -24.56 10.77 19.82 0.21 -24.34 16 19 O -0.38 -15.18 9.42 -55.49 -0.52 -15.70 16 20 C 0.12 3.47 1.13 -10.80 -0.01 3.46 16 21 C -0.18 -4.87 8.37 71.98 0.60 -4.27 16 22 C -0.13 -3.15 8.85 71.98 0.64 -2.51 16 23 C -0.17 -4.67 8.37 71.98 0.60 -4.07 16 24 H 0.05 1.94 6.73 -2.39 -0.02 1.93 16 25 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 28 H 0.09 3.01 7.83 -2.39 -0.02 2.99 16 29 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.05 2.83 7.33 -2.39 -0.02 2.82 16 31 H 0.04 1.98 8.03 -2.39 -0.02 1.96 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 2.09 5.88 -2.39 -0.01 2.08 16 35 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 2.04 5.88 -2.39 -0.01 2.02 16 39 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.38 317.01 5.11 -56.27 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.00 Total: 18.47 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 4.96 Total: 1.69 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.57 Total: -80.34 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.31 Total: -40.05 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -61.38 5.11 -56.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211433162.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.819 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds