Wall clock time and date at job start Mon Mar 30 2020 06:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55242 * 2 1 4 4 C 1.52994 * 117.52240 * 214.29777 * 2 1 3 5 5 C 1.52997 * 117.50044 * 145.66462 * 2 1 3 6 6 C 1.53004 * 117.49878 * 0.02610 * 5 2 1 7 7 C 1.50693 * 109.47144 * 179.18337 * 6 5 2 8 8 H 1.07997 * 120.00114 * 4.81369 * 7 6 5 9 9 C 1.37880 * 119.99661 * 184.80714 * 7 6 5 10 10 N 1.31513 * 120.00397 * 5.05285 * 9 7 6 11 11 Si 1.86806 * 119.99860 * 185.04616 * 9 7 6 12 12 H 1.48502 * 109.47141 * 5.00313 * 11 9 7 13 13 H 1.48489 * 109.47048 * 125.00665 * 11 9 7 14 14 H 1.48508 * 109.46981 * 245.00563 * 11 9 7 15 15 N 1.46496 * 117.50294 * 215.02873 * 5 2 1 16 16 C 1.34780 * 120.00317 * 88.83465 * 15 5 2 17 17 O 1.21515 * 119.99585 * 355.11161 * 16 15 5 18 18 O 1.34635 * 120.00221 * 175.10944 * 16 15 5 19 19 C 1.45198 * 117.00086 * 183.03697 * 18 16 15 20 20 C 1.53007 * 109.46978 * 59.26171 * 19 18 16 21 21 C 1.52996 * 109.47267 * 179.26258 * 19 18 16 22 22 C 1.53006 * 109.47236 * 299.26639 * 19 18 16 23 23 H 1.09001 * 109.47101 * 274.33445 * 1 2 3 24 24 H 1.09001 * 109.47107 * 34.33422 * 1 2 3 25 25 H 1.08995 * 109.47056 * 154.33027 * 1 2 3 26 26 H 1.08994 * 117.50252 * 145.03313 * 4 2 1 27 27 H 1.09002 * 117.49450 * 0.02562 * 4 2 1 28 28 H 1.09003 * 109.46949 * 299.18956 * 6 5 2 29 29 H 1.09005 * 109.46694 * 59.18369 * 6 5 2 30 30 H 0.96998 * 120.00430 * 180.02562 * 10 9 7 31 31 H 0.96996 * 119.99999 * 268.83850 * 15 5 2 32 32 H 1.09005 * 109.46947 * 60.00094 * 20 19 18 33 33 H 1.08993 * 109.47038 * 180.02562 * 20 19 18 34 34 H 1.08999 * 109.47438 * 300.00152 * 20 19 18 35 35 H 1.09002 * 109.47088 * 60.00147 * 21 19 18 36 36 H 1.09005 * 109.46893 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.47142 * 300.00203 * 21 19 18 38 38 H 1.08993 * 109.46781 * 67.07035 * 22 19 18 39 39 H 1.08996 * 109.46851 * 187.07211 * 22 19 18 40 40 H 1.08993 * 109.46712 * 307.06797 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1209 -0.7645 5 6 2.2364 -1.1206 0.7655 6 6 1.3588 -2.1559 1.4719 7 6 2.2344 -3.1799 2.1469 8 1 3.3075 -3.0582 2.1452 9 6 1.6654 -4.2722 2.7668 10 7 0.3684 -4.4735 2.6844 11 14 2.7369 -5.4662 3.7237 12 1 4.1307 -4.9554 3.7669 13 1 2.2155 -5.5995 5.1076 14 1 2.7166 -6.7931 3.0571 15 7 3.4926 -0.7897 1.4427 16 6 3.4747 -0.3315 2.7101 17 8 2.4145 -0.1085 3.2604 18 8 4.6313 -0.1210 3.3663 19 6 4.5354 0.3082 4.7501 20 6 3.7729 -0.7436 5.5585 21 6 5.9410 0.4771 5.3302 22 6 3.7910 1.6431 4.8197 23 1 -0.3633 0.0777 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1721 -0.8750 -1.2675 27 1 1.6120 -1.8584 -1.2681 28 1 0.7395 -1.6585 2.2183 29 1 0.7195 -2.6501 0.7402 30 1 -0.0319 -5.2417 3.1208 31 1 4.3373 -0.9004 0.9789 32 1 4.3032 -1.6947 5.5089 33 1 3.7006 -0.4213 6.5972 34 1 2.7716 -0.8640 5.1452 35 1 6.4841 1.2264 4.7543 36 1 5.8689 0.7988 6.3692 37 1 6.4713 -0.4740 5.2806 38 1 2.7522 1.4956 4.5245 39 1 3.8280 2.0270 5.8391 40 1 4.2626 2.3576 4.1451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216319760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:19 Heat of formation + Delta-G solvation = -67.742709 kcal Electronic energy + Delta-G solvation = -20467.309075 eV Core-core repulsion = 17475.893991 eV Total energy + Delta-G solvation = -2991.415084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11933 -38.23237 -35.91099 -33.71720 -32.73395 -32.20379 -28.37049 -27.44163 -27.18125 -27.00616 -23.35752 -22.39441 -20.69404 -19.53711 -18.29993 -17.53790 -16.57487 -15.82484 -15.42325 -15.11410 -14.42712 -14.03018 -13.90106 -13.36413 -13.14152 -12.72999 -12.50518 -12.25166 -12.04582 -12.00255 -11.60325 -11.51806 -11.46697 -11.32808 -11.05173 -10.88456 -10.85747 -10.73646 -10.63729 -10.06409 -9.89914 -9.51744 -9.42210 -9.18748 -8.96237 -8.23665 -7.96523 -5.93489 -3.91455 2.77162 3.33457 3.41203 3.45179 3.71705 4.41120 4.52641 4.68520 5.01945 5.04851 5.21647 5.36620 5.45893 5.49458 5.60861 5.64668 5.77103 5.85954 5.88280 5.96266 6.00818 6.18397 6.21050 6.25531 6.33738 6.40291 6.58022 6.58302 6.76090 6.84597 6.91501 7.09597 7.20712 7.73010 7.85358 8.04062 8.27686 8.48929 9.11577 9.24887 9.69793 11.18399 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.010374 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.753319 B = 2698.463203 C = 4122.391157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.168 4.168 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.155 3.845 6 C 0.054 3.946 7 C -0.501 4.501 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.895 5.895 11 Si 0.884 3.116 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.285 1.285 15 N -0.671 5.671 16 C 0.659 3.341 17 O -0.549 6.549 18 O -0.376 6.376 19 C 0.139 3.861 20 C -0.184 4.184 21 C -0.139 4.139 22 C -0.179 4.179 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.258 0.742 31 H 0.394 0.606 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.554 10.235 -0.199 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.188 4.188 3 H 0.110 0.890 4 C -0.213 4.213 5 C 0.069 3.931 6 C 0.016 3.984 7 C -0.539 4.539 8 H 0.073 0.927 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.712 3.288 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.211 1.211 15 N -0.327 5.327 16 C 0.412 3.588 17 O -0.436 6.436 18 O -0.292 6.292 19 C 0.102 3.898 20 C -0.241 4.241 21 C -0.196 4.196 22 C -0.236 4.236 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.228 0.772 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.917 10.244 0.232 12.363 hybrid contribution 1.065 -0.832 0.398 1.409 sum 7.982 9.412 0.630 12.357 Atomic orbital electron populations 1.21239 0.92678 1.01007 1.02107 1.22788 0.95843 0.94369 1.05770 0.89006 1.23479 1.02047 1.01655 0.94121 1.21188 0.85448 0.97577 0.88917 1.18906 0.93524 0.90475 0.95472 1.21098 0.93154 1.05948 1.33746 0.92695 1.24929 0.94838 0.97750 0.96717 1.69960 1.10022 1.29184 1.44346 0.86663 0.80857 0.81183 0.80073 1.19905 1.21129 1.21150 1.43843 1.09059 1.68557 1.11220 1.17805 0.82027 0.76912 0.82034 1.90865 1.30450 1.55339 1.66943 1.86230 1.34018 1.81828 1.27107 1.21889 0.96220 0.94415 0.77303 1.22506 1.03945 0.98129 0.99532 1.21836 0.94562 1.02788 1.00403 1.22488 1.03654 0.95599 1.01847 0.91765 0.93425 0.92254 0.89595 0.87882 0.94793 0.94965 0.93233 0.77203 0.92247 0.91924 0.88528 0.91920 0.90618 0.91663 0.89131 0.91848 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.21 37.16 0.34 -1.57 16 2 C -0.17 -2.97 6.33 -90.63 -0.57 -3.54 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 4 C -0.18 -2.97 9.74 -26.73 -0.26 -3.23 16 5 C 0.15 3.20 2.11 -131.82 -0.28 2.93 16 6 C 0.05 1.39 3.53 -27.88 -0.10 1.29 16 7 C -0.50 -14.10 8.34 -34.44 -0.29 -14.38 16 8 H 0.05 1.53 6.81 -52.49 -0.36 1.17 16 9 C 0.06 1.68 5.45 -17.82 -0.10 1.59 16 10 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 11 Si 0.88 22.21 29.54 -169.99 -5.02 17.19 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 N -0.67 -13.25 4.35 -52.47 -0.23 -13.48 16 16 C 0.66 13.89 7.20 54.06 0.39 14.28 16 17 O -0.55 -12.91 10.93 -19.28 -0.21 -13.12 16 18 O -0.38 -7.02 9.94 -40.31 -0.40 -7.42 16 19 C 0.14 2.21 1.13 -90.61 -0.10 2.11 16 20 C -0.18 -3.21 8.36 37.16 0.31 -2.89 16 21 C -0.14 -1.68 8.85 37.16 0.33 -1.35 16 22 C -0.18 -2.63 8.27 37.16 0.31 -2.32 16 23 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 1.01 7.74 -51.93 -0.40 0.61 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.74 7.96 -51.93 -0.41 1.33 16 28 H 0.03 0.98 7.51 -51.93 -0.39 0.59 16 29 H 0.03 0.87 7.73 -51.93 -0.40 0.47 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.39 6.65 8.93 -40.82 -0.36 6.29 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.10 2.05 5.93 -51.93 -0.31 1.75 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.59 6.05 -51.93 -0.31 1.27 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -31.90 324.33 -6.99 -38.89 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.73 Total: 6.47 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.02 Total: -7.11 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.51 Total: -39.78 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.61 Total: -20.54 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.90 -6.99 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.856 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds