Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 115.55242 * 2 1 4 4 C 1.52994 * 117.52240 * 214.29777 * 2 1 3 5 5 C 1.52997 * 117.50044 * 145.66462 * 2 1 3 6 6 C 1.53004 * 117.49878 * 0.02610 * 5 2 1 7 7 C 1.50693 * 109.47144 * 179.18337 * 6 5 2 8 8 H 1.07997 * 120.00114 * 4.81369 * 7 6 5 9 9 C 1.37880 * 119.99661 * 184.80714 * 7 6 5 10 10 N 1.31513 * 120.00397 * 5.05285 * 9 7 6 11 11 Si 1.86806 * 119.99860 * 185.04616 * 9 7 6 12 12 H 1.48502 * 109.47141 * 5.00313 * 11 9 7 13 13 H 1.48489 * 109.47048 * 125.00665 * 11 9 7 14 14 H 1.48508 * 109.46981 * 245.00563 * 11 9 7 15 15 N 1.46496 * 117.50294 * 215.02873 * 5 2 1 16 16 C 1.34780 * 120.00317 * 88.83465 * 15 5 2 17 17 O 1.21515 * 119.99585 * 355.11161 * 16 15 5 18 18 O 1.34635 * 120.00221 * 175.10944 * 16 15 5 19 19 C 1.45198 * 117.00086 * 183.03697 * 18 16 15 20 20 C 1.53007 * 109.46978 * 59.26171 * 19 18 16 21 21 C 1.52996 * 109.47267 * 179.26258 * 19 18 16 22 22 C 1.53006 * 109.47236 * 299.26639 * 19 18 16 23 23 H 1.09001 * 109.47101 * 274.33445 * 1 2 3 24 24 H 1.09001 * 109.47107 * 34.33422 * 1 2 3 25 25 H 1.08995 * 109.47056 * 154.33027 * 1 2 3 26 26 H 1.08994 * 117.50252 * 145.03313 * 4 2 1 27 27 H 1.09002 * 117.49450 * 0.02562 * 4 2 1 28 28 H 1.09003 * 109.46949 * 299.18956 * 6 5 2 29 29 H 1.09005 * 109.46694 * 59.18369 * 6 5 2 30 30 H 0.96998 * 120.00430 * 180.02562 * 10 9 7 31 31 H 0.96996 * 119.99999 * 268.83850 * 15 5 2 32 32 H 1.09005 * 109.46947 * 60.00094 * 20 19 18 33 33 H 1.08993 * 109.47038 * 180.02562 * 20 19 18 34 34 H 1.08999 * 109.47438 * 300.00152 * 20 19 18 35 35 H 1.09002 * 109.47088 * 60.00147 * 21 19 18 36 36 H 1.09005 * 109.46893 * 180.02562 * 21 19 18 37 37 H 1.09005 * 109.47142 * 300.00203 * 21 19 18 38 38 H 1.08993 * 109.46781 * 67.07035 * 22 19 18 39 39 H 1.08996 * 109.46851 * 187.07211 * 22 19 18 40 40 H 1.08993 * 109.46712 * 307.06797 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1209 -0.7645 5 6 2.2364 -1.1206 0.7655 6 6 1.3588 -2.1559 1.4719 7 6 2.2344 -3.1799 2.1469 8 1 3.3075 -3.0582 2.1452 9 6 1.6654 -4.2722 2.7668 10 7 0.3684 -4.4735 2.6844 11 14 2.7369 -5.4662 3.7237 12 1 4.1307 -4.9554 3.7669 13 1 2.2155 -5.5995 5.1076 14 1 2.7166 -6.7931 3.0571 15 7 3.4926 -0.7897 1.4427 16 6 3.4747 -0.3315 2.7101 17 8 2.4145 -0.1085 3.2604 18 8 4.6313 -0.1210 3.3663 19 6 4.5354 0.3082 4.7501 20 6 3.7729 -0.7436 5.5585 21 6 5.9410 0.4771 5.3302 22 6 3.7910 1.6431 4.8197 23 1 -0.3633 0.0777 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9262 -0.4451 26 1 3.1721 -0.8750 -1.2675 27 1 1.6120 -1.8584 -1.2681 28 1 0.7395 -1.6585 2.2183 29 1 0.7195 -2.6501 0.7402 30 1 -0.0319 -5.2417 3.1208 31 1 4.3373 -0.9004 0.9789 32 1 4.3032 -1.6947 5.5089 33 1 3.7006 -0.4213 6.5972 34 1 2.7716 -0.8640 5.1452 35 1 6.4841 1.2264 4.7543 36 1 5.8689 0.7988 6.3692 37 1 6.4713 -0.4740 5.2806 38 1 2.7522 1.4956 4.5245 39 1 3.8280 2.0270 5.8391 40 1 4.2626 2.3576 4.1451 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216319760.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = -88.266545 kcal Electronic energy + Delta-G solvation = -20468.199055 eV Core-core repulsion = 17475.893991 eV Total energy + Delta-G solvation = -2992.305064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.64069 -39.73585 -37.41968 -35.15889 -34.89928 -33.71516 -30.37962 -28.96124 -28.31735 -28.23757 -25.39774 -23.95272 -22.14227 -20.94911 -19.95025 -19.04050 -18.61115 -17.38983 -16.94120 -16.73702 -16.35391 -15.47796 -15.26843 -14.84006 -14.54435 -14.45990 -14.06238 -13.88792 -13.52354 -13.26558 -13.13289 -13.01169 -12.82671 -12.76859 -12.70509 -12.59246 -12.42548 -12.26703 -12.18123 -11.82037 -11.44547 -11.29443 -11.10266 -10.99981 -10.77640 -10.36296 -9.57128 -8.16760 -6.21248 1.31171 1.32455 1.34150 1.45185 2.11984 2.38907 2.93298 3.18541 3.29283 3.83541 3.86021 3.91457 4.00448 4.04293 4.17637 4.48627 4.58032 4.63913 4.76842 4.78847 4.86211 4.88000 4.92866 4.96326 4.97922 5.10111 5.16546 5.19417 5.34915 5.35885 5.43542 5.48392 5.62276 5.64264 5.80155 5.92244 6.31004 6.71587 6.90851 7.43814 7.69453 8.95736 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.010374 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.753319 B = 2698.463203 C = 4122.391157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.156 4.156 3 H 0.110 0.890 4 C -0.144 4.144 5 C 0.115 3.885 6 C 0.070 3.930 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.002 3.998 10 N -0.932 5.932 11 Si 0.947 3.053 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.274 1.274 15 N -0.663 5.663 16 C 0.652 3.348 17 O -0.581 6.581 18 O -0.376 6.376 19 C 0.125 3.875 20 C -0.181 4.181 21 C -0.131 4.131 22 C -0.172 4.172 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.051 0.949 26 H 0.123 0.877 27 H 0.102 0.898 28 H -0.013 1.013 29 H 0.010 0.990 30 H 0.260 0.740 31 H 0.409 0.591 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 11.214 -0.498 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 H 0.128 0.872 4 C -0.181 4.181 5 C 0.029 3.971 6 C 0.032 3.968 7 C -0.545 4.545 8 H 0.073 0.927 9 C -0.195 4.195 10 N -0.573 5.573 11 Si 0.773 3.227 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.199 1.199 15 N -0.321 5.321 16 C 0.406 3.594 17 O -0.470 6.470 18 O -0.292 6.292 19 C 0.089 3.911 20 C -0.238 4.238 21 C -0.188 4.188 22 C -0.229 4.229 23 H 0.054 0.946 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.005 0.995 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.245 0.755 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.405 11.226 -0.084 14.645 hybrid contribution 0.257 -1.107 0.534 1.256 sum 9.662 10.119 0.450 13.998 Atomic orbital electron populations 1.21243 0.92644 1.02221 1.00894 1.22865 0.95989 0.94719 1.03956 0.87247 1.23569 1.03212 1.00404 0.90906 1.20842 0.86263 0.98958 0.91025 1.18510 0.93309 0.91011 0.93945 1.21417 0.93380 1.06263 1.33489 0.92667 1.25784 0.96102 0.99865 0.97797 1.70088 1.11737 1.30009 1.45469 0.85666 0.79295 0.79264 0.78492 1.19116 1.21109 1.19911 1.43747 1.09389 1.67893 1.11021 1.18075 0.82222 0.76724 0.82412 1.90868 1.31829 1.56622 1.67728 1.86246 1.32679 1.81709 1.28522 1.22357 0.98792 0.94185 0.75786 1.22461 1.01304 0.98550 1.01535 1.21857 0.91618 1.03326 1.01953 1.22406 1.01302 0.95261 1.03921 0.94581 0.89909 0.92951 0.85920 0.87934 0.99524 0.97165 0.93161 0.75526 0.93404 0.88765 0.93136 0.90423 0.87721 0.91863 0.92651 0.88806 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.81 9.21 71.98 0.66 -3.15 16 2 C -0.16 -5.32 6.33 -10.80 -0.07 -5.39 16 3 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 4 C -0.14 -4.55 9.74 30.59 0.30 -4.26 16 5 C 0.12 4.79 2.11 3.60 0.01 4.80 16 6 C 0.07 3.78 3.53 29.85 0.11 3.89 16 7 C -0.51 -29.34 8.34 25.60 0.21 -29.12 16 8 H 0.06 3.12 6.81 -2.91 -0.02 3.10 16 9 C 0.00 0.09 5.45 84.66 0.46 0.55 16 10 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 11 Si 0.95 46.30 29.54 68.60 2.03 48.32 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 14 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 15 N -0.66 -25.95 4.35 -550.32 -2.40 -28.34 16 16 C 0.65 27.82 7.20 129.79 0.93 28.75 16 17 O -0.58 -28.58 10.93 19.79 0.22 -28.37 16 18 O -0.38 -13.82 9.94 -55.45 -0.55 -14.37 16 19 C 0.13 3.83 1.13 -10.79 -0.01 3.82 16 20 C -0.18 -6.32 8.36 71.98 0.60 -5.71 16 21 C -0.13 -2.74 8.85 71.98 0.64 -2.11 16 22 C -0.17 -4.83 8.27 71.98 0.60 -4.23 16 23 H 0.04 1.40 8.06 -2.39 -0.02 1.38 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 26 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 27 H 0.10 3.29 7.96 -2.39 -0.02 3.27 16 28 H -0.01 -0.84 7.51 -2.39 -0.02 -0.86 16 29 H 0.01 0.58 7.73 -2.38 -0.02 0.56 16 30 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.41 13.18 8.93 -92.71 -0.83 12.35 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.56 16 34 H 0.05 2.24 5.93 -2.39 -0.01 2.23 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.05 1.97 6.05 -2.39 -0.01 1.96 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -73.05 324.33 4.21 -68.85 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.19 Total: 24.04 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.44 Total: -12.16 kcal Atomic # 7 Polarization: -84.20 SS G_CDS: -2.11 Total: -86.31 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.33 Total: -42.74 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -73.05 4.21 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319760.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.421 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds