Wall clock time and date at job start Mon Mar 30 2020 06:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08996 * 115.56041 * 2 1 4 4 C 1.52998 * 117.49666 * 145.68668 * 2 1 3 5 5 C 1.52995 * 117.49522 * 214.31079 * 2 1 3 6 6 C 1.52998 * 117.49522 * 145.02358 * 5 2 1 7 7 C 1.50705 * 109.47172 * 135.28058 * 6 5 2 8 8 H 1.08001 * 119.99908 * 3.69688 * 7 6 5 9 9 C 1.37877 * 120.00211 * 183.69471 * 7 6 5 10 10 N 1.31515 * 119.99696 * 5.18711 * 9 7 6 11 11 Si 1.86797 * 120.00248 * 185.18310 * 9 7 6 12 12 H 1.48502 * 109.47038 * 175.00259 * 11 9 7 13 13 H 1.48497 * 109.47224 * 295.00900 * 11 9 7 14 14 H 1.48504 * 109.47066 * 55.00541 * 11 9 7 15 15 N 1.46495 * 117.52128 * 359.97438 * 5 2 1 16 16 C 1.34773 * 120.00054 * 80.85998 * 15 5 2 17 17 O 1.21515 * 119.99724 * 3.02446 * 16 15 5 18 18 O 1.34639 * 120.00324 * 183.03007 * 16 15 5 19 19 C 1.45200 * 117.00313 * 176.58614 * 18 16 15 20 20 C 1.53002 * 109.46813 * 45.14919 * 19 18 16 21 21 C 1.52994 * 109.47396 * 165.14776 * 19 18 16 22 22 C 1.52994 * 109.47263 * 285.15182 * 19 18 16 23 23 H 1.08996 * 109.47055 * 205.68804 * 1 2 3 24 24 H 1.09003 * 109.46876 * 325.69084 * 1 2 3 25 25 H 1.09001 * 109.46969 * 85.69044 * 1 2 3 26 26 H 1.09007 * 117.49971 * 0.02562 * 4 2 1 27 27 H 1.09001 * 117.49910 * 214.97695 * 4 2 1 28 28 H 1.08995 * 109.47417 * 15.28090 * 6 5 2 29 29 H 1.09006 * 109.47106 * 255.27746 * 6 5 2 30 30 H 0.96994 * 120.00111 * 359.97438 * 10 9 7 31 31 H 0.97002 * 120.00091 * 260.85204 * 15 5 2 32 32 H 1.09002 * 109.47050 * 59.99946 * 20 19 18 33 33 H 1.09003 * 109.46865 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.47477 * 300.00190 * 20 19 18 35 35 H 1.09004 * 109.47142 * 59.99677 * 21 19 18 36 36 H 1.08994 * 109.47510 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.47094 * 300.00438 * 21 19 18 38 38 H 1.09002 * 109.47475 * 75.95865 * 22 19 18 39 39 H 1.08997 * 109.46910 * 195.96097 * 22 19 18 40 40 H 1.08996 * 109.47173 * 315.95758 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 6 3.5490 -0.7759 -1.4714 7 6 4.5630 -1.8583 -1.2040 8 1 4.2804 -2.7360 -0.6417 9 6 5.8514 -1.7280 -1.6773 10 7 6.2239 -0.6162 -2.2728 11 14 7.0680 -3.1307 -1.4726 12 1 8.3361 -2.7914 -2.1669 13 1 7.3367 -3.3460 -0.0281 14 1 6.4982 -4.3699 -2.0601 15 7 1.3965 -2.1127 -1.4411 16 6 0.8578 -1.8318 -2.6441 17 8 1.1131 -0.7781 -3.1930 18 8 0.0367 -2.7184 -3.2377 19 6 -0.5671 -2.3179 -4.4960 20 6 0.4962 -1.6784 -5.3912 21 6 -1.1508 -3.5469 -5.1957 22 6 -1.6829 -1.3063 -4.2270 23 1 -0.3633 -0.9261 0.4454 24 1 -0.3633 0.8489 0.5793 25 1 -0.3633 0.0772 -1.0248 26 1 1.6112 -1.8587 1.2680 27 1 3.1716 -0.8752 1.2683 28 1 3.9251 0.1753 -1.0949 29 1 3.3746 -0.6986 -2.5446 30 1 5.5922 0.1120 -2.3794 31 1 1.2282 -2.9717 -1.0230 32 1 1.2912 -2.3992 -5.5827 33 1 0.0430 -1.3782 -6.3359 34 1 0.9121 -0.8028 -4.8927 35 1 -1.9083 -4.0026 -4.5579 36 1 -1.6037 -3.2464 -6.1404 37 1 -0.3558 -4.2677 -5.3873 38 1 -1.2450 -0.3350 -3.9966 39 1 -2.3152 -1.2193 -5.1106 40 1 -2.2835 -1.6437 -3.3824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216319808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:21 Heat of formation + Delta-G solvation = -66.379749 kcal Electronic energy + Delta-G solvation = -20246.482267 eV Core-core repulsion = 17255.126286 eV Total energy + Delta-G solvation = -2991.355981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41556 -38.37975 -36.07875 -33.97484 -33.08510 -32.21749 -29.00981 -27.37943 -27.13296 -26.68185 -23.34432 -22.68119 -20.60001 -19.85719 -18.91968 -17.73172 -16.61875 -16.07133 -15.67617 -14.85945 -14.63406 -14.36765 -14.02148 -13.67699 -13.29940 -12.99498 -12.62541 -12.44048 -12.33133 -11.95894 -11.81159 -11.75082 -11.63241 -11.49685 -11.23774 -10.99412 -10.92296 -10.65557 -10.49556 -10.12188 -10.06993 -9.92339 -9.46778 -9.12985 -8.60637 -8.28056 -8.06046 -6.29970 -3.98095 2.58135 3.39498 3.44934 3.48172 3.66224 4.29770 4.53158 4.60238 4.82745 4.88479 5.05184 5.21995 5.37200 5.47236 5.48527 5.54884 5.63691 5.68057 5.70038 5.79160 5.89098 6.02717 6.06307 6.09168 6.11108 6.29762 6.33343 6.37982 6.51810 6.73784 6.82885 6.86677 7.07975 7.40663 7.66822 8.02792 8.24329 8.51391 8.92870 9.00523 9.72145 11.09938 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.007031 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.256693 B = 3981.488166 C = 4842.183659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.170 4.170 3 H 0.104 0.896 4 C -0.161 4.161 5 C 0.157 3.843 6 C 0.037 3.963 7 C -0.592 4.592 8 H 0.048 0.952 9 C 0.015 3.985 10 N -0.913 5.913 11 Si 1.067 2.933 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.290 1.290 15 N -0.667 5.667 16 C 0.653 3.347 17 O -0.556 6.556 18 O -0.373 6.373 19 C 0.136 3.864 20 C -0.206 4.206 21 C -0.140 4.140 22 C -0.169 4.169 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.019 0.981 29 H 0.030 0.970 30 H 0.269 0.731 31 H 0.398 0.602 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.309 -3.425 -0.462 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.189 4.189 3 H 0.122 0.878 4 C -0.199 4.199 5 C 0.071 3.929 6 C -0.001 4.001 7 C -0.631 4.631 8 H 0.066 0.934 9 C -0.189 4.189 10 N -0.549 5.549 11 Si 0.895 3.105 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.216 1.216 15 N -0.323 5.323 16 C 0.407 3.593 17 O -0.445 6.445 18 O -0.288 6.288 19 C 0.099 3.901 20 C -0.263 4.263 21 C -0.198 4.198 22 C -0.227 4.227 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.233 0.767 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.665 -3.381 -1.123 14.121 hybrid contribution -1.680 -0.059 0.452 1.740 sum -15.344 -3.440 -0.672 15.740 Atomic orbital electron populations 1.21204 0.93585 1.00770 1.01274 1.22889 0.94833 0.95494 1.05721 0.87792 1.23344 1.02404 1.00389 0.93719 1.20930 0.92037 0.90216 0.89671 1.19073 0.88020 0.96786 0.96220 1.21913 0.96876 1.05811 1.38463 0.93387 1.25777 0.97954 1.01066 0.94117 1.70762 1.38516 1.04715 1.40911 0.83577 0.75964 0.74692 0.76220 1.20850 1.21517 1.21628 1.43937 1.51516 1.19312 1.17556 1.18005 0.77747 0.81993 0.81569 1.90727 1.64743 1.26178 1.62805 1.86263 1.58844 1.45896 1.37808 1.21980 0.92579 0.95015 0.80508 1.23073 0.98446 1.05360 0.99410 1.21868 1.01299 0.96812 0.99784 1.22327 0.98012 1.00138 1.02197 0.93249 0.92878 0.92696 0.89508 0.87528 0.96259 0.95221 0.92019 0.76732 0.92526 0.92452 0.85831 0.91792 0.90535 0.91594 0.91032 0.91256 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.51 37.16 0.35 -1.33 16 2 C -0.17 -3.05 6.05 -90.62 -0.55 -3.60 16 3 H 0.10 1.91 8.09 -51.93 -0.42 1.49 16 4 C -0.16 -2.86 9.61 -26.73 -0.26 -3.12 16 5 C 0.16 3.27 1.61 -131.82 -0.21 3.06 16 6 C 0.04 0.96 4.37 -27.88 -0.12 0.84 16 7 C -0.59 -16.67 8.91 -34.44 -0.31 -16.98 16 8 H 0.05 1.32 7.75 -52.49 -0.41 0.91 16 9 C 0.01 0.42 5.45 -17.82 -0.10 0.33 16 10 N -0.91 -28.38 13.65 55.43 0.76 -27.63 16 11 Si 1.07 25.59 29.91 -169.99 -5.08 20.51 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 N -0.67 -12.75 4.87 -52.47 -0.26 -13.01 16 16 C 0.65 12.87 7.39 54.05 0.40 13.27 16 17 O -0.56 -12.21 10.91 -19.28 -0.21 -12.42 16 18 O -0.37 -6.39 9.93 -40.32 -0.40 -6.79 16 19 C 0.14 1.95 1.13 -90.62 -0.10 1.85 16 20 C -0.21 -3.25 7.95 37.16 0.30 -2.95 16 21 C -0.14 -1.54 8.79 37.15 0.33 -1.22 16 22 C -0.17 -2.13 8.60 37.15 0.32 -1.81 16 23 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 26 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 27 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 28 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 29 H 0.03 0.87 6.79 -51.93 -0.35 0.51 16 30 H 0.27 8.43 7.13 -40.82 -0.29 8.14 16 31 H 0.40 6.63 8.94 -40.82 -0.36 6.27 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.12 2.36 4.86 -53.68 -0.26 2.10 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.03 7.42 -51.93 -0.39 0.64 16 39 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -32.08 325.27 -6.94 -39.02 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.69 Total: 7.08 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 0.05 Total: -11.66 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.50 Total: -40.63 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.61 Total: -19.21 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.08 -6.94 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.363 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds