Wall clock time and date at job start Mon Mar 30 2020 06:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08996 * 115.56041 * 2 1 4 4 C 1.52998 * 117.49666 * 145.68668 * 2 1 3 5 5 C 1.52995 * 117.49522 * 214.31079 * 2 1 3 6 6 C 1.52998 * 117.49522 * 145.02358 * 5 2 1 7 7 C 1.50705 * 109.47172 * 135.28058 * 6 5 2 8 8 H 1.08001 * 119.99908 * 3.69688 * 7 6 5 9 9 C 1.37877 * 120.00211 * 183.69471 * 7 6 5 10 10 N 1.31515 * 119.99696 * 5.18711 * 9 7 6 11 11 Si 1.86797 * 120.00248 * 185.18310 * 9 7 6 12 12 H 1.48502 * 109.47038 * 175.00259 * 11 9 7 13 13 H 1.48497 * 109.47224 * 295.00900 * 11 9 7 14 14 H 1.48504 * 109.47066 * 55.00541 * 11 9 7 15 15 N 1.46495 * 117.52128 * 359.97438 * 5 2 1 16 16 C 1.34773 * 120.00054 * 80.85998 * 15 5 2 17 17 O 1.21515 * 119.99724 * 3.02446 * 16 15 5 18 18 O 1.34639 * 120.00324 * 183.03007 * 16 15 5 19 19 C 1.45200 * 117.00313 * 176.58614 * 18 16 15 20 20 C 1.53002 * 109.46813 * 45.14919 * 19 18 16 21 21 C 1.52994 * 109.47396 * 165.14776 * 19 18 16 22 22 C 1.52994 * 109.47263 * 285.15182 * 19 18 16 23 23 H 1.08996 * 109.47055 * 205.68804 * 1 2 3 24 24 H 1.09003 * 109.46876 * 325.69084 * 1 2 3 25 25 H 1.09001 * 109.46969 * 85.69044 * 1 2 3 26 26 H 1.09007 * 117.49971 * 0.02562 * 4 2 1 27 27 H 1.09001 * 117.49910 * 214.97695 * 4 2 1 28 28 H 1.08995 * 109.47417 * 15.28090 * 6 5 2 29 29 H 1.09006 * 109.47106 * 255.27746 * 6 5 2 30 30 H 0.96994 * 120.00111 * 359.97438 * 10 9 7 31 31 H 0.97002 * 120.00091 * 260.85204 * 15 5 2 32 32 H 1.09002 * 109.47050 * 59.99946 * 20 19 18 33 33 H 1.09003 * 109.46865 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.47477 * 300.00190 * 20 19 18 35 35 H 1.09004 * 109.47142 * 59.99677 * 21 19 18 36 36 H 1.08994 * 109.47510 * 180.02562 * 21 19 18 37 37 H 1.09002 * 109.47094 * 300.00438 * 21 19 18 38 38 H 1.09002 * 109.47475 * 75.95865 * 22 19 18 39 39 H 1.08997 * 109.46910 * 195.96097 * 22 19 18 40 40 H 1.08996 * 109.47173 * 315.95758 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7650 6 6 3.5490 -0.7759 -1.4714 7 6 4.5630 -1.8583 -1.2040 8 1 4.2804 -2.7360 -0.6417 9 6 5.8514 -1.7280 -1.6773 10 7 6.2239 -0.6162 -2.2728 11 14 7.0680 -3.1307 -1.4726 12 1 8.3361 -2.7914 -2.1669 13 1 7.3367 -3.3460 -0.0281 14 1 6.4982 -4.3699 -2.0601 15 7 1.3965 -2.1127 -1.4411 16 6 0.8578 -1.8318 -2.6441 17 8 1.1131 -0.7781 -3.1930 18 8 0.0367 -2.7184 -3.2377 19 6 -0.5671 -2.3179 -4.4960 20 6 0.4962 -1.6784 -5.3912 21 6 -1.1508 -3.5469 -5.1957 22 6 -1.6829 -1.3063 -4.2270 23 1 -0.3633 -0.9261 0.4454 24 1 -0.3633 0.8489 0.5793 25 1 -0.3633 0.0772 -1.0248 26 1 1.6112 -1.8587 1.2680 27 1 3.1716 -0.8752 1.2683 28 1 3.9251 0.1753 -1.0949 29 1 3.3746 -0.6986 -2.5446 30 1 5.5922 0.1120 -2.3794 31 1 1.2282 -2.9717 -1.0230 32 1 1.2912 -2.3992 -5.5827 33 1 0.0430 -1.3782 -6.3359 34 1 0.9121 -0.8028 -4.8927 35 1 -1.9083 -4.0026 -4.5579 36 1 -1.6037 -3.2464 -6.1404 37 1 -0.3558 -4.2677 -5.3873 38 1 -1.2450 -0.3350 -3.9966 39 1 -2.3152 -1.2193 -5.1106 40 1 -2.2835 -1.6437 -3.3824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216319808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:20 Heat of formation + Delta-G solvation = -87.375198 kcal Electronic energy + Delta-G solvation = -20247.392698 eV Core-core repulsion = 17255.126286 eV Total energy + Delta-G solvation = -2992.266412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.85650 -39.86110 -37.52280 -35.37502 -35.20435 -33.64077 -30.76218 -28.41732 -28.32273 -28.27800 -25.38558 -24.20009 -22.14044 -21.17944 -20.50834 -19.18815 -18.71705 -17.42222 -17.08669 -16.47390 -16.10860 -15.76493 -15.60523 -15.20334 -14.88142 -14.49344 -13.99186 -13.82616 -13.47663 -13.38836 -13.30985 -13.11759 -12.92795 -12.79042 -12.67014 -12.51451 -12.38182 -12.32046 -12.11053 -11.94846 -11.51163 -11.37807 -11.14237 -10.72563 -10.53149 -10.46019 -9.75396 -8.64451 -6.33832 1.19375 1.50810 1.60297 1.78383 1.87169 2.55774 2.83686 3.15107 3.21886 3.73496 3.76369 3.82123 3.92865 3.96341 4.13050 4.36308 4.52831 4.61300 4.67034 4.74210 4.80545 4.82996 4.84996 4.86286 4.89452 4.93719 5.06805 5.11156 5.11998 5.25774 5.30076 5.36078 5.47109 5.53547 5.82381 5.99501 6.20618 6.54063 6.58394 7.47000 7.52923 8.74213 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019196 B = 0.007031 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.256693 B = 3981.488166 C = 4842.183659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.160 4.160 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.126 3.874 6 C 0.045 3.955 7 C -0.594 4.594 8 H 0.057 0.943 9 C -0.044 4.044 10 N -0.941 5.941 11 Si 1.117 2.883 12 H -0.288 1.288 13 H -0.262 1.262 14 H -0.273 1.273 15 N -0.660 5.660 16 C 0.649 3.351 17 O -0.585 6.585 18 O -0.371 6.371 19 C 0.122 3.878 20 C -0.203 4.203 21 C -0.134 4.134 22 C -0.163 4.163 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.124 0.876 27 H 0.096 0.904 28 H -0.007 1.007 29 H -0.014 1.014 30 H 0.251 0.749 31 H 0.411 0.589 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 -5.459 0.519 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.179 4.179 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.040 3.960 6 C 0.007 3.993 7 C -0.632 4.632 8 H 0.075 0.925 9 C -0.240 4.240 10 N -0.579 5.579 11 Si 0.938 3.062 12 H -0.214 1.214 13 H -0.187 1.187 14 H -0.199 1.199 15 N -0.317 5.317 16 C 0.403 3.597 17 O -0.476 6.476 18 O -0.286 6.286 19 C 0.086 3.914 20 C -0.260 4.260 21 C -0.191 4.191 22 C -0.220 4.220 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.142 0.858 27 H 0.114 0.886 28 H 0.012 0.988 29 H 0.005 0.995 30 H 0.060 0.940 31 H 0.248 0.752 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.119 0.881 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.689 -5.434 -0.127 16.604 hybrid contribution -1.094 0.629 0.067 1.263 sum -16.783 -4.806 -0.060 17.458 Atomic orbital electron populations 1.21162 0.90961 1.02896 1.00847 1.22951 0.96758 0.94447 1.03781 0.89039 1.23406 1.02415 1.00494 0.91016 1.20494 0.91007 0.93279 0.91258 1.18800 0.91077 0.95311 0.94092 1.22275 0.97230 1.06179 1.37478 0.92505 1.27423 1.00809 1.02509 0.93297 1.70910 1.38242 1.05478 1.43312 0.82951 0.73468 0.72052 0.77735 1.21357 1.18695 1.19851 1.43776 1.50855 1.19574 1.17519 1.18204 0.77867 0.81966 0.81633 1.90753 1.65695 1.27620 1.63535 1.86276 1.58244 1.45179 1.38926 1.22455 0.92396 0.97281 0.79249 1.22965 0.98754 1.03386 1.00890 1.21896 1.01330 0.94963 1.00878 1.22284 0.97575 0.98090 1.04045 0.91336 0.90442 0.94395 0.85812 0.88598 0.98847 0.99534 0.93970 0.75245 0.94319 0.89521 0.89510 0.90272 0.87691 0.92261 0.93646 0.88076 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.87 9.51 71.99 0.68 -2.19 16 2 C -0.16 -5.63 6.05 -10.79 -0.07 -5.70 16 3 H 0.09 3.42 8.09 -2.39 -0.02 3.40 16 4 C -0.14 -4.59 9.61 30.60 0.29 -4.30 16 5 C 0.13 5.28 1.61 3.60 0.01 5.29 16 6 C 0.05 2.48 4.37 29.85 0.13 2.61 16 7 C -0.59 -34.03 8.91 25.60 0.23 -33.80 16 8 H 0.06 3.10 7.75 -2.91 -0.02 3.07 16 9 C -0.04 -2.60 5.45 84.65 0.46 -2.14 16 10 N -0.94 -60.85 13.65 21.45 0.29 -60.56 16 11 Si 1.12 51.29 29.91 68.60 2.05 53.35 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 N -0.66 -25.03 4.87 -550.33 -2.68 -27.71 16 16 C 0.65 25.98 7.39 129.79 0.96 26.94 16 17 O -0.59 -27.03 10.91 19.79 0.22 -26.82 16 18 O -0.37 -12.53 9.93 -55.49 -0.55 -13.08 16 19 C 0.12 3.36 1.13 -10.80 -0.01 3.35 16 20 C -0.20 -6.48 7.95 71.98 0.57 -5.91 16 21 C -0.13 -2.56 8.79 71.98 0.63 -1.93 16 22 C -0.16 -3.81 8.60 71.98 0.62 -3.19 16 23 H 0.07 1.68 7.90 -2.39 -0.02 1.66 16 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.21 7.67 -2.39 -0.02 1.19 16 26 H 0.12 3.27 8.05 -2.38 -0.02 3.26 16 27 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 28 H -0.01 -0.39 7.50 -2.39 -0.02 -0.41 16 29 H -0.01 -0.86 6.79 -2.38 -0.02 -0.87 16 30 H 0.25 16.72 7.13 -92.71 -0.66 16.06 16 31 H 0.41 13.08 8.94 -92.71 -0.83 12.25 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.09 3.51 4.86 -30.20 -0.15 3.36 16 35 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.04 1.30 7.42 -2.39 -0.02 1.28 16 39 H 0.10 1.69 8.04 -2.39 -0.02 1.67 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -73.65 325.27 4.00 -69.65 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.16 Total: 26.14 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 4.51 Total: -20.97 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -2.39 Total: -88.27 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -0.33 Total: -39.89 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.35 kcal Total: -73.65 4.00 -69.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.725 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds