Wall clock time and date at job start Mon Mar 30 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 115.56352 * 2 1 4 4 C 1.53072 * 117.49286 * 214.28487 * 2 1 3 5 5 C 1.52999 * 59.98614 * 252.51695 * 4 2 1 6 6 C 1.52995 * 117.49695 * 252.49840 * 5 4 2 7 7 C 1.50706 * 109.47246 * 271.27132 * 6 5 4 8 8 H 1.07996 * 119.99680 * 4.94079 * 7 6 5 9 9 C 1.37873 * 120.00106 * 184.94958 * 7 6 5 10 10 N 1.31521 * 119.99907 * 5.07610 * 9 7 6 11 11 Si 1.86794 * 120.00102 * 185.08294 * 9 7 6 12 12 H 1.48502 * 109.47308 * 174.99735 * 11 9 7 13 13 H 1.48501 * 109.47036 * 294.99796 * 11 9 7 14 14 H 1.48500 * 109.47216 * 54.99643 * 11 9 7 15 15 N 1.46505 * 117.49602 * 107.50379 * 5 4 2 16 16 C 1.34768 * 119.99478 * 210.72049 * 15 5 4 17 17 O 1.21508 * 120.00882 * 5.08113 * 16 15 5 18 18 O 1.34636 * 119.99702 * 185.08284 * 16 15 5 19 19 C 1.45205 * 117.00117 * 183.27226 * 18 16 15 20 20 C 1.52998 * 109.47156 * 59.01218 * 19 18 16 21 21 C 1.53008 * 109.47064 * 179.00811 * 19 18 16 22 22 C 1.52998 * 109.46916 * 299.00618 * 19 18 16 23 23 H 1.08999 * 109.46938 * 274.31227 * 1 2 3 24 24 H 1.08995 * 109.47079 * 34.30804 * 1 2 3 25 25 H 1.08992 * 109.47194 * 154.31050 * 1 2 3 26 26 H 1.09006 * 117.50929 * 145.03671 * 4 2 1 27 27 H 1.08996 * 117.51351 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47341 * 151.27387 * 6 5 4 29 29 H 1.08994 * 109.47443 * 31.27270 * 6 5 4 30 30 H 0.96994 * 120.00183 * 0.02562 * 10 9 7 31 31 H 0.96998 * 119.99754 * 30.71679 * 15 5 4 32 32 H 1.09000 * 109.47291 * 63.87119 * 20 19 18 33 33 H 1.08997 * 109.47287 * 183.88062 * 20 19 18 34 34 H 1.09004 * 109.46806 * 303.87370 * 20 19 18 35 35 H 1.08998 * 109.47093 * 60.00098 * 21 19 18 36 36 H 1.08995 * 109.46844 * 180.02562 * 21 19 18 37 37 H 1.08996 * 109.46896 * 300.00212 * 21 19 18 38 38 H 1.08994 * 109.47071 * 60.00572 * 22 19 18 39 39 H 1.09005 * 109.46659 * 179.97438 * 22 19 18 40 40 H 1.08998 * 109.47476 * 300.00046 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1219 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 3.5489 -0.7760 1.4715 7 6 4.3547 -2.0329 1.6764 8 1 4.0071 -2.9698 1.2668 9 6 5.5354 -1.9868 2.3868 10 7 5.9085 -0.8687 2.9703 11 14 6.6052 -3.5122 2.5204 12 1 7.8664 -3.1720 3.2268 13 1 5.8792 -4.5609 3.2810 14 1 6.9205 -4.0165 1.1597 15 7 1.3960 -2.1119 1.4420 16 6 0.8541 -1.8282 2.6428 17 8 0.9853 -0.7193 3.1220 18 8 0.1672 -2.7735 3.3116 19 6 -0.4507 -2.3770 4.5644 20 6 -1.4325 -1.2318 4.3089 21 6 -1.2016 -3.5686 5.1623 22 6 0.6309 -1.9132 5.5422 23 1 -0.3633 0.0773 1.0248 24 1 -0.3633 0.8488 -0.5792 25 1 -0.3633 -0.9260 -0.4455 26 1 3.1719 -0.8766 -1.2682 27 1 1.6116 -1.8599 -1.2675 28 1 3.3327 -0.3215 2.4383 29 1 4.1176 -0.0756 0.8598 30 1 5.3529 -0.0767 2.9011 31 1 1.2297 -2.9721 1.0257 32 1 -2.2407 -1.5824 3.6671 33 1 -1.8448 -0.8882 5.2576 34 1 -0.9113 -0.4087 3.8200 35 1 -0.5022 -4.3846 5.3443 36 1 -1.6658 -3.2709 6.1024 37 1 -1.9720 -3.8991 4.4657 38 1 1.1657 -1.0643 5.1163 39 1 0.1669 -1.6152 6.4825 40 1 1.3303 -2.7291 5.7242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216319852.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:23 Heat of formation + Delta-G solvation = -74.321772 kcal Electronic energy + Delta-G solvation = -20386.145176 eV Core-core repulsion = 17394.444802 eV Total energy + Delta-G solvation = -2991.700373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29771 -38.34638 -35.98362 -33.84585 -33.10391 -32.13494 -28.99042 -27.28259 -27.12404 -26.73692 -23.23377 -22.65421 -20.63006 -19.72875 -18.82060 -17.66916 -16.69783 -15.95341 -15.67925 -14.73737 -14.61647 -14.15069 -14.01092 -13.67781 -13.27602 -12.97711 -12.58499 -12.37342 -12.06424 -11.95637 -11.80598 -11.69457 -11.57939 -11.44123 -11.22969 -11.00274 -10.95595 -10.63059 -10.55635 -10.09332 -10.03603 -9.82702 -9.55851 -9.19745 -8.63949 -8.27954 -8.02460 -6.29346 -3.97174 2.66533 3.45502 3.47662 3.52148 3.66089 4.29715 4.57687 4.60974 4.91670 4.94510 5.10671 5.21771 5.33399 5.49087 5.54154 5.56306 5.67857 5.70683 5.79222 5.85571 5.92561 6.07319 6.09785 6.11176 6.13745 6.28161 6.36836 6.46478 6.59989 6.70169 6.74149 6.94167 7.02265 7.41218 7.60214 8.11246 8.24838 8.51736 8.93926 9.07455 9.72985 11.10736 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.008331 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.345985 B = 3360.036005 C = 4474.704782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.167 4.167 3 H 0.103 0.897 4 C -0.169 4.169 5 C 0.160 3.840 6 C 0.034 3.966 7 C -0.589 4.589 8 H 0.047 0.953 9 C 0.015 3.985 10 N -0.912 5.912 11 Si 1.066 2.934 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.288 1.288 15 N -0.664 5.664 16 C 0.658 3.342 17 O -0.560 6.560 18 O -0.372 6.372 19 C 0.138 3.862 20 C -0.182 4.182 21 C -0.139 4.139 22 C -0.183 4.183 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.031 0.969 29 H 0.016 0.984 30 H 0.269 0.731 31 H 0.398 0.602 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 -3.071 -0.919 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 H 0.121 0.879 4 C -0.207 4.207 5 C 0.074 3.926 6 C -0.003 4.003 7 C -0.628 4.628 8 H 0.066 0.934 9 C -0.189 4.189 10 N -0.549 5.549 11 Si 0.895 3.105 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.215 1.215 15 N -0.320 5.320 16 C 0.411 3.589 17 O -0.449 6.449 18 O -0.288 6.288 19 C 0.101 3.899 20 C -0.239 4.239 21 C -0.196 4.196 22 C -0.241 4.241 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.232 0.768 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.755 -3.124 0.059 13.132 hybrid contribution -1.483 0.099 -0.807 1.691 sum -14.238 -3.025 -0.748 14.575 Atomic orbital electron populations 1.21197 0.93454 1.00621 1.01549 1.22819 0.95015 0.95350 1.05490 0.87866 1.23403 1.02442 1.00883 0.93927 1.20855 0.92261 0.90262 0.89175 1.19075 0.87971 0.97525 0.95753 1.21832 1.08343 0.94496 1.38101 0.93445 1.25762 0.97029 1.02839 0.93261 1.70761 1.40862 1.02062 1.41197 0.83586 0.76257 0.74483 0.76183 1.20847 1.21665 1.21491 1.43755 1.51612 1.19123 1.17465 1.17883 0.77255 0.82527 0.81218 1.90852 1.63507 1.22483 1.68030 1.86258 1.65099 1.41368 1.36054 1.21923 0.92300 0.95006 0.80704 1.22500 0.98962 0.99779 1.02638 1.21837 1.00086 0.97180 1.00484 1.22512 0.98944 1.04081 0.98525 0.92335 0.92993 0.93335 0.87935 0.89360 0.95081 0.96580 0.92028 0.76850 0.92645 0.91526 0.89292 0.91526 0.90529 0.91859 0.88822 0.91844 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.51 37.16 0.35 -1.35 16 2 C -0.17 -2.97 6.13 -90.58 -0.56 -3.53 16 3 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 4 C -0.17 -2.92 9.80 -26.69 -0.26 -3.18 16 5 C 0.16 3.34 1.59 -131.82 -0.21 3.13 16 6 C 0.03 0.90 4.26 -27.88 -0.12 0.78 16 7 C -0.59 -16.67 8.87 -34.44 -0.31 -16.98 16 8 H 0.05 1.32 7.75 -52.49 -0.41 0.91 16 9 C 0.01 0.43 5.45 -17.82 -0.10 0.34 16 10 N -0.91 -28.47 13.65 55.43 0.76 -27.72 16 11 Si 1.07 25.76 29.91 -169.99 -5.08 20.68 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 15 N -0.66 -13.01 4.60 -52.47 -0.24 -13.25 16 16 C 0.66 13.45 7.28 54.05 0.39 13.85 16 17 O -0.56 -12.63 10.60 -19.28 -0.20 -12.84 16 18 O -0.37 -6.75 9.94 -40.31 -0.40 -7.15 16 19 C 0.14 2.09 1.13 -90.62 -0.10 1.99 16 20 C -0.18 -2.52 8.41 37.16 0.31 -2.20 16 21 C -0.14 -1.59 8.85 37.16 0.33 -1.26 16 22 C -0.18 -2.99 8.39 37.16 0.31 -2.68 16 23 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.68 7.90 -51.93 -0.41 0.27 16 26 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 27 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 28 H 0.03 0.91 6.76 -51.93 -0.35 0.56 16 29 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.27 8.47 7.10 -40.82 -0.29 8.18 16 31 H 0.40 6.82 8.94 -40.82 -0.36 6.45 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.48 5.83 -51.93 -0.30 1.18 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.87 5.84 -51.93 -0.30 1.56 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -32.40 324.70 -6.90 -39.30 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.67 Total: 7.18 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 0.05 Total: -11.10 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.51 Total: -40.97 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.60 Total: -19.99 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -5.08 Total: 20.68 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.40 -6.90 -39.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319852.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.024 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds