Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.54855 * 2 1 4 4 C 1.53001 * 117.50234 * 145.71175 * 2 1 3 5 5 C 1.52998 * 59.99977 * 107.48987 * 4 2 1 6 6 C 1.53005 * 117.52001 * 252.52076 * 5 4 2 7 7 C 1.50694 * 109.46851 * 270.00113 * 6 5 4 8 8 H 1.07999 * 120.00717 * 355.15958 * 7 6 5 9 9 C 1.37885 * 119.99595 * 175.15884 * 7 6 5 10 10 N 1.31516 * 119.99902 * 5.24591 * 9 7 6 11 11 Si 1.86803 * 119.99785 * 185.23732 * 9 7 6 12 12 H 1.48498 * 109.46801 * 94.99226 * 11 9 7 13 13 H 1.48501 * 109.47203 * 214.99217 * 11 9 7 14 14 H 1.48494 * 109.47428 * 334.99424 * 11 9 7 15 15 N 1.46501 * 117.50087 * 107.49370 * 5 4 2 16 16 C 1.34776 * 119.99975 * 225.58422 * 15 5 4 17 17 O 1.21510 * 120.00168 * 4.94320 * 16 15 5 18 18 O 1.34637 * 119.99962 * 184.94278 * 16 15 5 19 19 C 1.45199 * 117.00243 * 183.61989 * 18 16 15 20 20 C 1.53010 * 109.46870 * 58.63457 * 19 18 16 21 21 C 1.53000 * 109.47482 * 178.63121 * 19 18 16 22 22 C 1.52998 * 109.47287 * 298.63644 * 19 18 16 23 23 H 1.08992 * 109.46715 * 205.66558 * 1 2 3 24 24 H 1.09001 * 109.46988 * 325.66798 * 1 2 3 25 25 H 1.08996 * 109.47031 * 85.66666 * 1 2 3 26 26 H 1.08999 * 117.49374 * 0.02562 * 4 2 1 27 27 H 1.08998 * 117.49890 * 214.97686 * 4 2 1 28 28 H 1.09002 * 109.46579 * 29.99906 * 6 5 4 29 29 H 1.08997 * 109.47145 * 149.99886 * 6 5 4 30 30 H 0.97008 * 119.99678 * 180.02562 * 10 9 7 31 31 H 0.97002 * 119.99942 * 45.29980 * 15 5 4 32 32 H 1.09003 * 109.47168 * 62.99622 * 20 19 18 33 33 H 1.08998 * 109.46685 * 182.99447 * 20 19 18 34 34 H 1.09004 * 109.46881 * 302.99454 * 20 19 18 35 35 H 1.09004 * 109.46842 * 60.00065 * 21 19 18 36 36 H 1.08991 * 109.47070 * 180.02562 * 21 19 18 37 37 H 1.09006 * 109.46997 * 300.00232 * 21 19 18 38 38 H 1.09001 * 109.46940 * 59.99358 * 22 19 18 39 39 H 1.08991 * 109.47430 * 179.97438 * 22 19 18 40 40 H 1.09004 * 109.46806 * 299.99794 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1213 0.7645 5 6 2.2365 -1.1206 -0.7654 6 6 1.3589 -2.1553 -1.4728 7 6 2.1544 -3.4138 -1.7054 8 1 3.2039 -3.4438 -1.4526 9 6 1.5422 -4.5272 -2.2410 10 7 0.2922 -4.4602 -2.6444 11 14 2.4883 -6.1306 -2.3937 12 1 2.2103 -6.9840 -1.2106 13 1 2.0636 -6.8405 -3.6269 14 1 3.9432 -5.8421 -2.4649 15 7 3.4932 -0.7900 -1.4418 16 6 3.4945 0.0728 -2.4772 17 8 2.4700 0.6450 -2.7926 18 8 4.6310 0.3007 -3.1621 19 6 4.5782 1.3017 -4.2127 20 6 4.1497 2.6443 -3.6168 21 6 5.9614 1.4451 -4.8507 22 6 3.5676 0.8706 -5.2775 23 1 -0.3632 -0.9262 0.4451 24 1 -0.3633 0.8486 0.5796 25 1 -0.3633 0.0776 -1.0247 26 1 1.6113 -1.8592 1.2672 27 1 3.1716 -0.8756 1.2678 28 1 0.4926 -2.3825 -0.8514 29 1 1.0245 -1.7547 -2.4298 30 1 -0.1386 -5.2436 -3.0208 31 1 4.3250 -1.1889 -1.1419 32 1 4.8971 2.9772 -2.8965 33 1 4.0585 3.3827 -4.4133 34 1 3.1884 2.5293 -3.1160 35 1 6.2666 0.4886 -5.2752 36 1 5.9217 2.1968 -5.6389 37 1 6.6813 1.7523 -4.0920 38 1 2.5822 0.7685 -4.8229 39 1 3.5276 1.6221 -6.0658 40 1 3.8728 -0.0859 -5.7020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216319900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -71.238226 kcal Electronic energy + Delta-G solvation = -20142.250442 eV Core-core repulsion = 17150.683781 eV Total energy + Delta-G solvation = -2991.566660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27135 -38.27061 -36.01091 -33.86452 -32.76639 -32.29873 -28.45857 -27.37940 -27.28873 -27.15431 -23.46030 -22.47089 -20.71117 -19.66438 -18.30477 -17.63902 -16.50285 -15.92588 -15.56898 -15.28281 -14.48725 -14.14573 -14.09877 -13.43518 -13.23719 -12.70636 -12.50343 -12.32039 -12.10432 -12.04202 -11.73004 -11.61286 -11.55769 -11.34260 -11.20253 -11.02078 -10.86844 -10.70133 -10.68536 -10.05530 -10.00503 -9.63908 -9.54950 -9.31840 -8.81430 -8.31185 -8.15164 -5.98781 -3.99735 2.68416 3.31801 3.38789 3.41533 3.51111 4.36551 4.50497 4.61023 4.90281 4.93019 5.08891 5.35364 5.42521 5.49203 5.54855 5.64790 5.67322 5.78142 5.84563 5.89981 5.92907 6.05362 6.10540 6.26133 6.36316 6.43951 6.45847 6.61118 6.63430 6.80678 6.87998 6.99945 7.14384 7.65564 7.80835 7.96766 8.15124 8.41268 9.03814 9.07261 9.62607 11.12197 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.007356 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.519640 B = 3805.759830 C = 4761.881022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.151 4.151 3 H 0.092 0.908 4 C -0.173 4.173 5 C 0.147 3.853 6 C 0.052 3.948 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.057 3.943 10 N -0.893 5.893 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 N -0.667 5.667 16 C 0.653 3.347 17 O -0.564 6.564 18 O -0.372 6.372 19 C 0.137 3.863 20 C -0.182 4.182 21 C -0.139 4.139 22 C -0.183 4.183 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.035 0.965 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.400 0.600 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 11.436 0.598 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.170 4.170 3 H 0.111 0.889 4 C -0.210 4.210 5 C 0.061 3.939 6 C 0.014 3.986 7 C -0.549 4.549 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.718 3.282 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.199 1.199 15 N -0.323 5.323 16 C 0.406 3.594 17 O -0.453 6.453 18 O -0.287 6.287 19 C 0.100 3.900 20 C -0.239 4.239 21 C -0.196 4.196 22 C -0.240 4.240 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.234 0.766 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.229 11.633 0.269 13.699 hybrid contribution 0.968 -1.149 -0.097 1.505 sum 8.197 10.484 0.172 13.309 Atomic orbital electron populations 1.21255 0.92684 1.00936 1.02109 1.22608 0.95738 0.94131 1.04567 0.88950 1.23453 1.02043 1.01468 0.94073 1.21186 0.85415 0.98137 0.89151 1.18942 0.93308 0.90608 0.95757 1.21072 0.96038 0.96353 1.41398 0.92725 1.24986 0.95014 0.98916 0.95481 1.69977 1.11843 1.29621 1.41811 0.86613 0.80166 0.83951 0.77472 1.20745 1.21352 1.19947 1.43930 1.10685 1.45936 1.31702 1.17994 0.81703 0.79834 0.79835 1.90850 1.32707 1.52648 1.69072 1.86274 1.36831 1.58119 1.47497 1.21921 0.96534 0.86212 0.85332 1.22507 1.04037 0.95672 1.01703 1.21838 0.94536 1.02769 1.00482 1.22510 1.01936 1.01445 0.98139 0.92249 0.93395 0.91778 0.87808 0.89656 0.94641 0.95510 0.93036 0.76565 0.92631 0.91560 0.89224 0.91531 0.90553 0.91830 0.88863 0.91830 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.04 37.16 0.34 -1.62 16 2 C -0.15 -2.75 5.75 -90.62 -0.52 -3.28 16 3 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 4 C -0.17 -3.01 9.80 -26.73 -0.26 -3.28 16 5 C 0.15 3.05 1.65 -131.82 -0.22 2.84 16 6 C 0.05 1.33 4.49 -27.88 -0.13 1.20 16 7 C -0.51 -14.11 8.88 -34.44 -0.31 -14.41 16 8 H 0.05 1.46 7.62 -52.49 -0.40 1.06 16 9 C 0.06 1.62 5.45 -17.82 -0.10 1.53 16 10 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 N -0.67 -13.10 5.03 -52.47 -0.26 -13.37 16 16 C 0.65 13.13 7.97 54.05 0.43 13.56 16 17 O -0.56 -12.33 11.48 -19.28 -0.22 -12.55 16 18 O -0.37 -6.60 9.94 -40.32 -0.40 -7.00 16 19 C 0.14 2.01 1.13 -90.62 -0.10 1.90 16 20 C -0.18 -2.45 8.39 37.16 0.31 -2.14 16 21 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 22 C -0.18 -2.80 8.40 37.16 0.31 -2.49 16 23 H 0.06 1.03 7.26 -51.93 -0.38 0.66 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.10 1.81 8.05 -51.93 -0.42 1.40 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.04 0.95 6.90 -51.93 -0.36 0.59 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.40 6.99 8.94 -40.82 -0.36 6.62 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.45 5.83 -51.93 -0.30 1.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.73 5.86 -51.93 -0.30 1.43 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -31.22 326.88 -6.89 -38.10 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.73 Total: 6.66 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 0.09 Total: -7.39 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.47 Total: -39.36 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.62 Total: -19.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.22 -6.89 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.134 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds