Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.54855 * 2 1 4 4 C 1.53001 * 117.50234 * 145.71175 * 2 1 3 5 5 C 1.52998 * 59.99977 * 107.48987 * 4 2 1 6 6 C 1.53005 * 117.52001 * 252.52076 * 5 4 2 7 7 C 1.50694 * 109.46851 * 270.00113 * 6 5 4 8 8 H 1.07999 * 120.00717 * 355.15958 * 7 6 5 9 9 C 1.37885 * 119.99595 * 175.15884 * 7 6 5 10 10 N 1.31516 * 119.99902 * 5.24591 * 9 7 6 11 11 Si 1.86803 * 119.99785 * 185.23732 * 9 7 6 12 12 H 1.48498 * 109.46801 * 94.99226 * 11 9 7 13 13 H 1.48501 * 109.47203 * 214.99217 * 11 9 7 14 14 H 1.48494 * 109.47428 * 334.99424 * 11 9 7 15 15 N 1.46501 * 117.50087 * 107.49370 * 5 4 2 16 16 C 1.34776 * 119.99975 * 225.58422 * 15 5 4 17 17 O 1.21510 * 120.00168 * 4.94320 * 16 15 5 18 18 O 1.34637 * 119.99962 * 184.94278 * 16 15 5 19 19 C 1.45199 * 117.00243 * 183.61989 * 18 16 15 20 20 C 1.53010 * 109.46870 * 58.63457 * 19 18 16 21 21 C 1.53000 * 109.47482 * 178.63121 * 19 18 16 22 22 C 1.52998 * 109.47287 * 298.63644 * 19 18 16 23 23 H 1.08992 * 109.46715 * 205.66558 * 1 2 3 24 24 H 1.09001 * 109.46988 * 325.66798 * 1 2 3 25 25 H 1.08996 * 109.47031 * 85.66666 * 1 2 3 26 26 H 1.08999 * 117.49374 * 0.02562 * 4 2 1 27 27 H 1.08998 * 117.49890 * 214.97686 * 4 2 1 28 28 H 1.09002 * 109.46579 * 29.99906 * 6 5 4 29 29 H 1.08997 * 109.47145 * 149.99886 * 6 5 4 30 30 H 0.97008 * 119.99678 * 180.02562 * 10 9 7 31 31 H 0.97002 * 119.99942 * 45.29980 * 15 5 4 32 32 H 1.09003 * 109.47168 * 62.99622 * 20 19 18 33 33 H 1.08998 * 109.46685 * 182.99447 * 20 19 18 34 34 H 1.09004 * 109.46881 * 302.99454 * 20 19 18 35 35 H 1.09004 * 109.46842 * 60.00065 * 21 19 18 36 36 H 1.08991 * 109.47070 * 180.02562 * 21 19 18 37 37 H 1.09006 * 109.46997 * 300.00232 * 21 19 18 38 38 H 1.09001 * 109.46940 * 59.99358 * 22 19 18 39 39 H 1.08991 * 109.47430 * 179.97438 * 22 19 18 40 40 H 1.09004 * 109.46806 * 299.99794 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1213 0.7645 5 6 2.2365 -1.1206 -0.7654 6 6 1.3589 -2.1553 -1.4728 7 6 2.1544 -3.4138 -1.7054 8 1 3.2039 -3.4438 -1.4526 9 6 1.5422 -4.5272 -2.2410 10 7 0.2922 -4.4602 -2.6444 11 14 2.4883 -6.1306 -2.3937 12 1 2.2103 -6.9840 -1.2106 13 1 2.0636 -6.8405 -3.6269 14 1 3.9432 -5.8421 -2.4649 15 7 3.4932 -0.7900 -1.4418 16 6 3.4945 0.0728 -2.4772 17 8 2.4700 0.6450 -2.7926 18 8 4.6310 0.3007 -3.1621 19 6 4.5782 1.3017 -4.2127 20 6 4.1497 2.6443 -3.6168 21 6 5.9614 1.4451 -4.8507 22 6 3.5676 0.8706 -5.2775 23 1 -0.3632 -0.9262 0.4451 24 1 -0.3633 0.8486 0.5796 25 1 -0.3633 0.0776 -1.0247 26 1 1.6113 -1.8592 1.2672 27 1 3.1716 -0.8756 1.2678 28 1 0.4926 -2.3825 -0.8514 29 1 1.0245 -1.7547 -2.4298 30 1 -0.1386 -5.2436 -3.0208 31 1 4.3250 -1.1889 -1.1419 32 1 4.8971 2.9772 -2.8965 33 1 4.0585 3.3827 -4.4133 34 1 3.1884 2.5293 -3.1160 35 1 6.2666 0.4886 -5.2752 36 1 5.9217 2.1968 -5.6389 37 1 6.6813 1.7523 -4.0920 38 1 2.5822 0.7685 -4.8229 39 1 3.5276 1.6221 -6.0658 40 1 3.8728 -0.0859 -5.7020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216319900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -91.245747 kcal Electronic energy + Delta-G solvation = -20143.118033 eV Core-core repulsion = 17150.683781 eV Total energy + Delta-G solvation = -2992.434252 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72603 -39.76638 -37.46611 -35.22085 -34.90775 -33.75719 -30.45396 -28.92656 -28.32795 -28.25239 -25.46747 -23.98193 -22.20674 -21.00587 -19.94185 -19.09969 -18.46846 -17.46319 -17.02912 -16.84175 -16.37784 -15.51505 -15.35945 -14.87282 -14.58336 -14.42619 -14.11714 -13.81834 -13.56195 -13.27293 -13.11081 -12.99494 -12.85398 -12.81237 -12.70390 -12.56557 -12.47046 -12.24653 -12.22860 -11.84281 -11.49457 -11.32976 -11.20949 -10.91471 -10.68604 -10.35946 -9.78804 -8.16965 -6.26021 1.28251 1.39708 1.40479 1.51357 1.96505 2.40872 2.89860 3.16237 3.24512 3.81385 3.84549 3.92037 3.98623 4.00458 4.18242 4.47337 4.57816 4.64038 4.76851 4.78712 4.85151 4.87117 4.91236 4.95067 4.98529 5.07698 5.16446 5.19221 5.30294 5.33314 5.40607 5.46754 5.54329 5.59170 5.78009 5.89241 6.24982 6.62855 6.87261 7.41269 7.56540 8.94646 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.017349 B = 0.007356 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.519640 B = 3805.759830 C = 4761.881022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.142 4.142 3 H 0.102 0.898 4 C -0.142 4.142 5 C 0.114 3.886 6 C 0.066 3.934 7 C -0.520 4.520 8 H 0.063 0.937 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.961 3.039 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.264 1.264 15 N -0.663 5.663 16 C 0.648 3.352 17 O -0.588 6.588 18 O -0.374 6.374 19 C 0.122 3.878 20 C -0.175 4.175 21 C -0.132 4.132 22 C -0.181 4.181 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.017 0.983 29 H -0.027 1.027 30 H 0.261 0.739 31 H 0.410 0.590 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.225 12.045 1.333 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.161 4.161 3 H 0.120 0.880 4 C -0.179 4.179 5 C 0.028 3.972 6 C 0.028 3.972 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.199 4.199 10 N -0.575 5.575 11 Si 0.786 3.214 12 H -0.195 1.195 13 H -0.215 1.215 14 H -0.188 1.188 15 N -0.320 5.320 16 C 0.402 3.598 17 O -0.478 6.478 18 O -0.289 6.289 19 C 0.086 3.914 20 C -0.232 4.232 21 C -0.189 4.189 22 C -0.238 4.238 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.054 0.946 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.035 0.965 29 H -0.008 1.008 30 H 0.070 0.930 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.637 12.250 1.013 15.619 hybrid contribution 0.187 -1.279 -0.401 1.354 sum 9.824 10.970 0.612 14.739 Atomic orbital electron populations 1.21246 0.92512 1.02180 1.00904 1.22660 0.95967 0.94227 1.03290 0.88002 1.23525 1.03063 1.00194 0.91138 1.20804 0.86209 0.99147 0.91049 1.18604 0.93587 0.91606 0.93378 1.21460 0.96515 0.97068 1.40787 0.91904 1.25931 0.95947 1.02837 0.95147 1.70129 1.13733 1.30695 1.42926 0.85495 0.79071 0.79274 0.77573 1.19486 1.21475 1.18777 1.43837 1.10601 1.45805 1.31740 1.18196 0.82004 0.79721 0.79920 1.90846 1.33803 1.53542 1.69642 1.86288 1.35533 1.59153 1.47969 1.22425 0.98600 0.85958 0.84439 1.22435 1.02538 0.95656 1.02617 1.21865 0.92067 1.03650 1.01282 1.22473 1.00027 1.02158 0.99133 0.92734 0.90043 0.94562 0.87783 0.86314 0.96521 1.00847 0.93001 0.75423 0.91319 0.88880 0.92468 0.91830 0.87589 0.90676 0.92840 0.88593 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.88 9.04 71.98 0.65 -3.23 16 2 C -0.14 -5.09 5.75 -10.79 -0.06 -5.15 16 3 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 4 C -0.14 -4.68 9.80 30.59 0.30 -4.38 16 5 C 0.11 4.78 1.65 3.60 0.01 4.79 16 6 C 0.07 3.56 4.49 29.85 0.13 3.70 16 7 C -0.52 -29.29 8.88 25.60 0.23 -29.06 16 8 H 0.06 3.35 7.62 -2.91 -0.02 3.33 16 9 C 0.00 -0.07 5.45 84.66 0.46 0.39 16 10 N -0.93 -57.74 13.29 21.45 0.29 -57.45 16 11 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 N -0.66 -26.04 5.03 -550.32 -2.77 -28.81 16 16 C 0.65 26.47 7.97 129.79 1.03 27.51 16 17 O -0.59 -26.78 11.48 19.81 0.23 -26.55 16 18 O -0.37 -13.16 9.94 -55.46 -0.55 -13.71 16 19 C 0.12 3.43 1.13 -10.79 -0.01 3.41 16 20 C -0.18 -4.46 8.39 71.99 0.60 -3.85 16 21 C -0.13 -2.54 8.85 71.98 0.64 -1.90 16 22 C -0.18 -5.53 8.40 71.98 0.60 -4.92 16 23 H 0.05 1.92 7.26 -2.39 -0.02 1.91 16 24 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 3.46 8.05 -2.39 -0.02 3.44 16 27 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.02 0.94 6.90 -2.39 -0.02 0.92 16 29 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 30 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 31 H 0.41 13.95 8.94 -92.71 -0.83 13.12 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.86 5.83 -2.38 -0.01 1.84 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.05 2.08 5.86 -2.39 -0.01 2.06 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 1.59 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -70.77 326.88 3.99 -66.79 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.19 Total: 25.84 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.59 Total: -12.71 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -2.48 Total: -86.26 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.32 Total: -40.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -70.77 3.99 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.460 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds