Wall clock time and date at job start Mon Mar 30 2020 06:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46999 * 2 1 4 4 H 1.08995 * 115.56974 * 29.30685 * 3 2 1 5 5 C 1.53008 * 117.49597 * 243.61797 * 3 2 1 6 6 C 1.53000 * 117.49927 * 174.99748 * 3 2 1 7 7 C 1.50707 * 117.51481 * 0.02562 * 6 3 2 8 8 H 1.07995 * 119.99937 * 98.76245 * 7 6 3 9 9 C 1.37869 * 119.99728 * 278.75838 * 7 6 3 10 10 N 1.31517 * 120.00074 * 4.94590 * 9 7 6 11 11 Si 1.86806 * 120.00006 * 184.94606 * 9 7 6 12 12 H 1.48501 * 109.46769 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47362 * 120.00481 * 11 9 7 14 14 H 1.48505 * 109.47094 * 240.00529 * 11 9 7 15 15 N 1.46495 * 117.50318 * 214.97926 * 6 3 2 16 16 C 1.34781 * 120.00024 * 235.61179 * 15 6 3 17 17 O 1.21514 * 119.99844 * 355.19548 * 16 15 6 18 18 O 1.34641 * 120.00199 * 175.18864 * 16 15 6 19 19 C 1.45188 * 117.00103 * 182.61159 * 18 16 15 20 20 C 1.52998 * 109.47677 * 58.43018 * 19 18 16 21 21 C 1.53005 * 109.47158 * 298.42669 * 19 18 16 22 22 C 1.53009 * 109.47145 * 178.43002 * 19 18 16 23 23 H 1.08994 * 109.47401 * 300.00681 * 1 2 3 24 24 H 1.09002 * 109.46806 * 60.00364 * 1 2 3 25 25 H 1.08992 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46934 * 239.99891 * 2 1 3 27 27 H 1.09002 * 109.46806 * 119.99636 * 2 1 3 28 28 H 1.09000 * 117.49793 * 145.02310 * 5 3 2 29 29 H 1.08994 * 117.49793 * 0.02562 * 5 3 2 30 30 H 0.97005 * 119.99885 * 184.99278 * 10 9 7 31 31 H 0.96999 * 120.00068 * 55.60785 * 15 6 3 32 32 H 1.09008 * 109.46822 * 299.99531 * 20 19 18 33 33 H 1.08993 * 109.47252 * 59.99779 * 20 19 18 34 34 H 1.09000 * 109.47638 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.47222 * 176.54945 * 21 19 18 36 36 H 1.08998 * 109.47419 * 296.55510 * 21 19 18 37 37 H 1.09000 * 109.46643 * 56.55194 * 21 19 18 38 38 H 1.08993 * 109.46879 * 299.99666 * 22 19 18 39 39 H 1.08995 * 109.46819 * 59.99521 * 22 19 18 40 40 H 1.09000 * 109.46833 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 6 4.4218 0.4332 0.2254 8 1 4.9257 0.0509 -0.6499 9 6 4.5760 -0.1990 1.4409 10 7 3.8874 0.2069 2.4853 11 14 5.7630 -1.6322 1.6043 12 1 6.4099 -1.8911 0.2929 13 1 6.8018 -1.3020 2.6127 14 1 5.0203 -2.8432 2.0370 15 7 4.0096 2.8284 0.8699 16 6 4.8356 3.7208 0.2885 17 8 5.2688 3.5107 -0.8271 18 8 5.1807 4.8452 0.9439 19 6 6.0264 5.7884 0.2347 20 6 5.3317 6.2258 -1.0564 21 6 7.3609 5.1214 -0.1050 22 6 6.2782 7.0121 1.1181 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7214 2.9426 -1.5344 29 1 3.0093 1.1859 -2.0159 30 1 4.0483 -0.1892 3.3560 31 1 3.7194 2.9613 1.7859 32 1 5.1525 5.3540 -1.6858 33 1 4.3811 6.7009 -0.8144 34 1 5.9669 6.9335 -1.5891 35 1 7.9719 5.8085 -0.6905 36 1 7.8839 4.8650 0.8163 37 1 7.1776 4.2156 -0.6829 38 1 5.3276 7.4872 1.3600 39 1 6.7731 6.7005 2.0378 40 1 6.9135 7.7199 0.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216319964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:36 Heat of formation + Delta-G solvation = -73.728989 kcal Electronic energy + Delta-G solvation = -20178.005061 eV Core-core repulsion = 17186.330393 eV Total energy + Delta-G solvation = -2991.674668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.88188 -37.64819 -35.68493 -33.57047 -32.53474 -32.04624 -30.17562 -27.14776 -27.04029 -25.61927 -22.94422 -22.38895 -20.07111 -19.24646 -18.91629 -17.19814 -16.53799 -15.69042 -15.24224 -14.62314 -14.56717 -13.94055 -13.83091 -13.54163 -13.28264 -13.04864 -12.30561 -12.22558 -11.91432 -11.58939 -11.56029 -11.43082 -11.36172 -11.07942 -11.04563 -10.89367 -10.80660 -10.55222 -10.49874 -10.05939 -9.89208 -9.75302 -9.20443 -8.94852 -8.69483 -8.18097 -7.69405 -6.17069 -4.21739 3.07012 3.26466 3.33348 3.38931 3.91693 4.34368 4.93413 5.05870 5.07808 5.11255 5.24908 5.39885 5.66471 5.77306 5.85483 5.91608 5.96449 5.99449 6.03187 6.12530 6.17428 6.20700 6.31987 6.35016 6.52575 6.63981 6.66404 6.74345 6.84444 6.89136 7.09325 7.23138 7.28543 7.57902 7.76637 7.88769 8.32012 8.66939 8.87593 9.45250 9.55976 10.90966 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.007339 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.661090 B = 3814.388612 C = 4685.230202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.141 4.141 4 H 0.077 0.923 5 C -0.186 4.186 6 C 0.277 3.723 7 C -0.483 4.483 8 H 0.067 0.933 9 C 0.079 3.921 10 N -0.873 5.873 11 Si 0.890 3.110 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.282 1.282 15 N -0.660 5.660 16 C 0.641 3.359 17 O -0.576 6.576 18 O -0.379 6.379 19 C 0.137 3.863 20 C -0.181 4.181 21 C -0.181 4.181 22 C -0.138 4.138 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.262 0.738 31 H 0.397 0.603 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 8.211 -1.814 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.161 4.161 4 H 0.095 0.905 5 C -0.224 4.224 6 C 0.195 3.805 7 C -0.522 4.522 8 H 0.085 0.915 9 C -0.125 4.125 10 N -0.510 5.510 11 Si 0.717 3.283 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.208 1.208 15 N -0.315 5.315 16 C 0.393 3.607 17 O -0.467 6.467 18 O -0.295 6.295 19 C 0.099 3.901 20 C -0.238 4.238 21 C -0.238 4.238 22 C -0.196 4.196 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.231 0.769 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.046 8.087 -2.193 8.379 hybrid contribution 0.629 -0.488 0.675 1.044 sum 0.675 7.599 -1.517 7.779 Atomic orbital electron populations 1.21802 0.97981 1.00050 1.00539 1.20839 0.92372 0.95040 1.02800 1.22535 0.95626 0.96774 1.01184 0.90523 1.23241 1.06612 0.99690 0.92819 1.18140 0.89259 0.83340 0.89794 1.20630 1.28986 1.07175 0.95426 0.91520 1.24982 0.94778 0.96778 0.95991 1.69944 1.38048 1.43217 0.99774 0.86572 0.81121 0.82219 0.78407 1.19526 1.20930 1.20823 1.44977 1.47500 1.22178 1.16814 1.18320 0.79628 0.79393 0.83329 1.90790 1.57608 1.78261 1.19995 1.86296 1.65674 1.30148 1.47343 1.21808 0.89445 0.87182 0.91652 1.22503 1.00193 1.03328 0.97820 1.22490 0.95588 1.03323 1.02443 1.21828 1.02245 0.95565 0.99931 0.93524 0.93864 0.93896 0.92862 0.90023 0.91282 0.89744 0.92773 0.76871 0.89025 0.92718 0.91985 0.92076 0.92591 0.88887 0.91879 0.91767 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.87 37.16 0.37 -2.09 16 2 C -0.07 -1.50 5.29 -26.73 -0.14 -1.64 16 3 C -0.14 -3.09 5.66 -90.62 -0.51 -3.60 16 4 H 0.08 1.62 8.07 -51.93 -0.42 1.20 16 5 C -0.19 -4.15 8.84 -26.73 -0.24 -4.38 16 6 C 0.28 6.75 1.51 -132.97 -0.20 6.55 16 7 C -0.48 -12.86 8.06 -34.44 -0.28 -13.14 16 8 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 9 C 0.08 2.07 4.93 -17.82 -0.09 1.98 16 10 N -0.87 -22.82 12.92 55.43 0.72 -22.10 16 11 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 N -0.66 -15.49 5.44 -53.55 -0.29 -15.78 16 16 C 0.64 14.59 7.89 54.06 0.43 15.01 16 17 O -0.58 -13.96 11.24 -19.28 -0.22 -14.18 16 18 O -0.38 -7.55 9.94 -40.33 -0.40 -7.95 16 19 C 0.14 2.21 1.13 -90.61 -0.10 2.10 16 20 C -0.18 -2.77 8.35 37.16 0.31 -2.46 16 21 C -0.18 -2.92 8.44 37.16 0.31 -2.60 16 22 C -0.14 -1.71 8.85 37.16 0.33 -1.38 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 27 H 0.08 1.89 7.17 -51.93 -0.37 1.52 16 28 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.86 8.03 -51.93 -0.42 1.44 16 30 H 0.26 6.61 8.32 -40.82 -0.34 6.27 16 31 H 0.40 9.11 8.94 -40.82 -0.36 8.74 16 32 H 0.09 1.67 5.86 -51.92 -0.30 1.37 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.81 5.83 -51.93 -0.30 1.51 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -27.81 326.69 -6.89 -34.70 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.79 Total: 10.42 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.19 Total: -5.64 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.43 Total: -37.89 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.62 Total: -22.13 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.81 -6.89 -34.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.025 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds