Wall clock time and date at job start Mon Mar 30 2020 06:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46999 * 2 1 4 4 H 1.08995 * 115.56974 * 29.30685 * 3 2 1 5 5 C 1.53008 * 117.49597 * 243.61797 * 3 2 1 6 6 C 1.53000 * 117.49927 * 174.99748 * 3 2 1 7 7 C 1.50707 * 117.51481 * 0.02562 * 6 3 2 8 8 H 1.07995 * 119.99937 * 98.76245 * 7 6 3 9 9 C 1.37869 * 119.99728 * 278.75838 * 7 6 3 10 10 N 1.31517 * 120.00074 * 4.94590 * 9 7 6 11 11 Si 1.86806 * 120.00006 * 184.94606 * 9 7 6 12 12 H 1.48501 * 109.46769 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47362 * 120.00481 * 11 9 7 14 14 H 1.48505 * 109.47094 * 240.00529 * 11 9 7 15 15 N 1.46495 * 117.50318 * 214.97926 * 6 3 2 16 16 C 1.34781 * 120.00024 * 235.61179 * 15 6 3 17 17 O 1.21514 * 119.99844 * 355.19548 * 16 15 6 18 18 O 1.34641 * 120.00199 * 175.18864 * 16 15 6 19 19 C 1.45188 * 117.00103 * 182.61159 * 18 16 15 20 20 C 1.52998 * 109.47677 * 58.43018 * 19 18 16 21 21 C 1.53005 * 109.47158 * 298.42669 * 19 18 16 22 22 C 1.53009 * 109.47145 * 178.43002 * 19 18 16 23 23 H 1.08994 * 109.47401 * 300.00681 * 1 2 3 24 24 H 1.09002 * 109.46806 * 60.00364 * 1 2 3 25 25 H 1.08992 * 109.47230 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46934 * 239.99891 * 2 1 3 27 27 H 1.09002 * 109.46806 * 119.99636 * 2 1 3 28 28 H 1.09000 * 117.49793 * 145.02310 * 5 3 2 29 29 H 1.08994 * 117.49793 * 0.02562 * 5 3 2 30 30 H 0.97005 * 119.99885 * 184.99278 * 10 9 7 31 31 H 0.96999 * 120.00068 * 55.60785 * 15 6 3 32 32 H 1.09008 * 109.46822 * 299.99531 * 20 19 18 33 33 H 1.08993 * 109.47252 * 59.99779 * 20 19 18 34 34 H 1.09000 * 109.47638 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.47222 * 176.54945 * 21 19 18 36 36 H 1.08998 * 109.47419 * 296.55510 * 21 19 18 37 37 H 1.09000 * 109.46643 * 56.55194 * 21 19 18 38 38 H 1.08993 * 109.46879 * 299.99666 * 22 19 18 39 39 H 1.08995 * 109.46819 * 59.99521 * 22 19 18 40 40 H 1.09000 * 109.46833 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4813 5 6 2.8440 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 6 4.4218 0.4332 0.2254 8 1 4.9257 0.0509 -0.6499 9 6 4.5760 -0.1990 1.4409 10 7 3.8874 0.2069 2.4853 11 14 5.7630 -1.6322 1.6043 12 1 6.4099 -1.8911 0.2929 13 1 6.8018 -1.3020 2.6127 14 1 5.0203 -2.8432 2.0370 15 7 4.0096 2.8284 0.8699 16 6 4.8356 3.7208 0.2885 17 8 5.2688 3.5107 -0.8271 18 8 5.1807 4.8452 0.9439 19 6 6.0264 5.7884 0.2347 20 6 5.3317 6.2258 -1.0564 21 6 7.3609 5.1214 -0.1050 22 6 6.2782 7.0121 1.1181 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7214 2.9426 -1.5344 29 1 3.0093 1.1859 -2.0159 30 1 4.0483 -0.1892 3.3560 31 1 3.7194 2.9613 1.7859 32 1 5.1525 5.3540 -1.6858 33 1 4.3811 6.7009 -0.8144 34 1 5.9669 6.9335 -1.5891 35 1 7.9719 5.8085 -0.6905 36 1 7.8839 4.8650 0.8163 37 1 7.1776 4.2156 -0.6829 38 1 5.3276 7.4872 1.3600 39 1 6.7731 6.7005 2.0378 40 1 6.9135 7.7199 0.5858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216319964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:35 Heat of formation + Delta-G solvation = -90.210698 kcal Electronic energy + Delta-G solvation = -20178.719762 eV Core-core repulsion = 17186.330393 eV Total energy + Delta-G solvation = -2992.389369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51428 -39.35895 -37.32603 -35.09776 -34.33121 -33.85717 -31.81042 -28.29674 -28.22652 -27.61920 -24.50742 -24.06043 -21.68695 -21.08412 -20.54318 -18.85882 -18.41272 -17.21135 -16.88616 -16.53011 -16.29691 -15.39361 -15.31648 -15.06002 -14.96774 -14.39973 -14.02305 -13.25707 -13.25271 -13.16928 -12.99700 -12.90206 -12.78589 -12.77689 -12.67227 -12.48505 -12.35708 -12.20946 -12.09962 -11.82672 -11.56880 -11.24230 -10.92514 -10.74909 -10.61261 -10.02359 -9.55602 -8.16121 -6.26306 1.34772 1.42419 1.51899 1.55029 2.14610 2.41343 3.05456 3.43745 3.55893 3.86187 3.88674 4.03539 4.26276 4.44748 4.50028 4.54473 4.63947 4.66022 4.73974 4.80366 4.84109 4.88107 4.92923 4.93482 5.03998 5.14320 5.15192 5.32551 5.36571 5.44230 5.45198 5.60052 5.65374 5.72516 5.88501 6.04947 6.38420 6.71999 6.96021 7.42672 7.79727 8.90686 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.007339 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.661090 B = 3814.388612 C = 4685.230202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.126 4.126 4 H 0.085 0.915 5 C -0.178 4.178 6 C 0.251 3.749 7 C -0.504 4.504 8 H 0.044 0.956 9 C 0.050 3.950 10 N -0.885 5.885 11 Si 0.938 3.062 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.272 1.272 15 N -0.663 5.663 16 C 0.640 3.360 17 O -0.595 6.595 18 O -0.383 6.383 19 C 0.119 3.881 20 C -0.176 4.176 21 C -0.177 4.177 22 C -0.131 4.131 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.265 0.735 31 H 0.397 0.603 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 9.401 -1.564 9.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 C -0.146 4.146 4 H 0.103 0.897 5 C -0.216 4.216 6 C 0.168 3.832 7 C -0.543 4.543 8 H 0.062 0.938 9 C -0.154 4.154 10 N -0.521 5.521 11 Si 0.765 3.235 12 H -0.202 1.202 13 H -0.209 1.209 14 H -0.198 1.198 15 N -0.319 5.319 16 C 0.393 3.607 17 O -0.487 6.487 18 O -0.298 6.298 19 C 0.083 3.917 20 C -0.233 4.233 21 C -0.235 4.235 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.103 9.293 -1.936 9.493 hybrid contribution 0.739 -0.786 0.564 1.217 sum 0.635 8.507 -1.372 8.640 Atomic orbital electron populations 1.21713 0.94724 1.01580 1.01456 1.20781 0.95194 0.93682 1.01130 1.22592 0.94214 0.97740 1.00061 0.89650 1.23166 1.06292 0.99692 0.92428 1.18152 0.90436 0.83217 0.91418 1.20657 1.29870 1.08693 0.95052 0.93825 1.25441 0.95814 0.98404 0.95717 1.69986 1.38429 1.43839 0.99866 0.85821 0.79560 0.80371 0.77792 1.20239 1.20870 1.19765 1.44844 1.47911 1.22312 1.16786 1.18365 0.79223 0.79974 0.83121 1.90786 1.58139 1.78904 1.20881 1.86300 1.66240 1.29584 1.47706 1.22390 0.88764 0.87601 0.92959 1.22435 1.01233 1.02546 0.97054 1.22440 0.96286 1.02463 1.02281 1.21854 1.03337 0.94033 0.99565 0.93123 0.92383 0.92135 0.93463 0.92753 0.91111 0.89980 0.92591 0.76867 0.92509 0.92130 0.88712 0.88713 0.92633 0.92815 0.91203 0.91709 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 9.87 71.98 0.71 -3.63 16 2 C -0.07 -2.86 5.29 30.59 0.16 -2.70 16 3 C -0.13 -5.50 5.66 -10.79 -0.06 -5.56 16 4 H 0.09 3.54 8.07 -2.39 -0.02 3.53 16 5 C -0.18 -8.02 8.84 30.60 0.27 -7.75 16 6 C 0.25 12.42 1.51 2.86 0.00 12.42 16 7 C -0.50 -27.47 8.06 25.60 0.21 -27.26 16 8 H 0.04 2.51 7.82 -2.91 -0.02 2.49 16 9 C 0.05 2.62 4.93 84.65 0.42 3.04 16 10 N -0.88 -46.43 12.92 21.44 0.28 -46.16 16 11 Si 0.94 42.72 29.54 68.60 2.03 44.74 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 N -0.66 -31.68 5.44 -553.74 -3.01 -34.69 16 16 C 0.64 29.60 7.89 129.79 1.02 30.63 16 17 O -0.60 -29.64 11.24 19.80 0.22 -29.42 16 18 O -0.38 -15.16 9.94 -55.51 -0.55 -15.71 16 19 C 0.12 3.67 1.13 -10.79 -0.01 3.66 16 20 C -0.18 -5.08 8.35 71.98 0.60 -4.48 16 21 C -0.18 -5.53 8.44 71.98 0.61 -4.92 16 22 C -0.13 -2.83 8.85 71.99 0.64 -2.19 16 23 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.94 7.87 -2.39 -0.02 1.92 16 27 H 0.05 2.52 7.17 -2.39 -0.02 2.50 16 28 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.08 3.69 8.03 -2.39 -0.02 3.67 16 30 H 0.26 13.30 8.32 -92.70 -0.77 12.53 16 31 H 0.40 18.49 8.94 -92.71 -0.83 17.66 16 32 H 0.06 2.07 5.86 -2.38 -0.01 2.05 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 2.12 5.83 -2.39 -0.01 2.10 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -60.68 326.69 3.71 -56.97 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.18 Total: 33.01 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.57 Total: -8.74 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.73 Total: -80.85 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -0.33 Total: -45.13 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.68 3.71 -56.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216319964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.242 kcal (2) G-P(sol) polarization free energy of solvation -60.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds