Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 H 1.09001 * 115.55179 * 330.58309 * 3 2 1 5 5 C 1.53001 * 117.49881 * 116.25593 * 3 2 1 6 6 C 1.52998 * 117.49501 * 184.91535 * 3 2 1 7 7 C 1.50706 * 117.49838 * 145.02211 * 6 3 2 8 8 H 1.07996 * 120.00210 * 114.76294 * 7 6 3 9 9 C 1.37877 * 119.99646 * 294.76796 * 7 6 3 10 10 N 1.31517 * 120.00069 * 4.93672 * 9 7 6 11 11 Si 1.86797 * 119.99890 * 184.93949 * 9 7 6 12 12 H 1.48502 * 109.47374 * 89.99896 * 11 9 7 13 13 H 1.48498 * 109.47327 * 209.99627 * 11 9 7 14 14 H 1.48502 * 109.47111 * 329.99878 * 11 9 7 15 15 N 1.46499 * 117.50250 * 359.97438 * 6 3 2 16 16 C 1.34776 * 120.00034 * 185.84272 * 15 6 3 17 17 O 1.21511 * 119.99999 * 5.01147 * 16 15 6 18 18 O 1.34638 * 120.00098 * 185.01277 * 16 15 6 19 19 C 1.45195 * 117.00326 * 183.24317 * 18 16 15 20 20 C 1.53004 * 109.46912 * 59.90286 * 19 18 16 21 21 C 1.52997 * 109.47230 * 179.90066 * 19 18 16 22 22 C 1.53004 * 109.47129 * 299.90350 * 19 18 16 23 23 H 1.09000 * 109.47073 * 59.99902 * 1 2 3 24 24 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46631 * 300.00130 * 1 2 3 26 26 H 1.09000 * 109.47073 * 120.00098 * 2 1 3 27 27 H 1.09000 * 109.46793 * 240.00195 * 2 1 3 28 28 H 1.09000 * 117.49587 * 214.97719 * 5 3 2 29 29 H 1.09001 * 117.49900 * 359.97267 * 5 3 2 30 30 H 0.97002 * 119.99512 * 175.00184 * 10 9 7 31 31 H 0.96996 * 119.99864 * 5.84263 * 15 6 3 32 32 H 1.08992 * 109.47461 * 60.00248 * 20 19 18 33 33 H 1.09000 * 109.47258 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.46956 * 299.99835 * 20 19 18 35 35 H 1.08995 * 109.47014 * 60.00420 * 21 19 18 36 36 H 1.08998 * 109.47187 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.47230 * 299.99597 * 21 19 18 38 38 H 1.08996 * 109.46768 * 66.85360 * 22 19 18 39 39 H 1.08997 * 109.46798 * 186.85361 * 22 19 18 40 40 H 1.09000 * 109.47015 * 306.85457 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 -0.4830 5 6 2.8415 1.9085 1.2171 6 6 3.5503 1.6578 -0.1163 7 6 4.0241 2.8616 -0.8894 8 1 4.5548 3.6541 -0.3828 9 6 3.7800 2.9511 -2.2434 10 7 3.0506 2.0349 -2.8421 11 14 4.4853 4.3735 -3.2275 12 1 5.8259 4.0002 -3.7459 13 1 3.5833 4.6834 -4.3657 14 1 4.6075 5.5677 -2.3534 15 7 4.3975 0.4670 -0.2185 16 6 5.7394 0.5914 -0.2045 17 8 6.2467 1.6793 -0.0158 18 8 6.5178 -0.4897 -0.3996 19 6 7.9532 -0.2953 -0.2994 20 6 8.3020 0.2178 1.0992 21 6 8.6666 -1.6259 -0.5471 22 6 8.4035 0.7272 -1.3448 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7182 2.9439 1.5346 29 1 3.0051 1.1875 2.0181 30 1 2.8183 2.1357 -3.7784 31 1 3.9926 -0.4110 -0.2963 32 1 7.9812 -0.5105 1.8439 33 1 9.3795 0.3643 1.1743 34 1 7.7937 1.1658 1.2756 35 1 8.4182 -1.9914 -1.5434 36 1 9.7442 -1.4798 -0.4723 37 1 8.3459 -2.3542 0.1977 38 1 7.9910 1.7053 -1.0974 39 1 9.4920 0.7833 -1.3526 40 1 8.0483 0.4213 -2.3288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216320012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -71.232542 kcal Electronic energy + Delta-G solvation = -20344.738351 eV Core-core repulsion = 17353.171937 eV Total energy + Delta-G solvation = -2991.566414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.74687 -37.66596 -35.62002 -33.44810 -32.55031 -31.84401 -30.43270 -27.09603 -26.94848 -25.55954 -23.06818 -22.34603 -20.01353 -19.24288 -18.86185 -17.32594 -16.49602 -15.52727 -15.15697 -14.59400 -14.29401 -13.95097 -13.81176 -13.72321 -13.02764 -13.00972 -12.23780 -12.13163 -12.08577 -11.83869 -11.48079 -11.35376 -11.27165 -11.02945 -10.91533 -10.86014 -10.72726 -10.68776 -10.54606 -10.12969 -9.87090 -9.68777 -9.21112 -8.98943 -8.70317 -8.23239 -7.37476 -6.05342 -4.09557 3.14008 3.34452 3.39784 3.43978 4.06016 4.41578 4.99853 5.12217 5.14054 5.22539 5.31442 5.42473 5.65686 5.71848 5.81708 5.84366 5.93338 5.95150 6.04621 6.09280 6.26190 6.29549 6.31500 6.37133 6.43854 6.60215 6.63922 6.70219 6.79242 6.87130 6.88598 7.04507 7.27188 7.47979 7.86205 7.97620 8.20777 8.87095 8.95548 9.54682 9.69379 11.00774 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.008909 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.780427 B = 3142.278960 C = 4258.913114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.125 4.125 4 H 0.102 0.898 5 C -0.216 4.216 6 C 0.280 3.720 7 C -0.464 4.464 8 H 0.068 0.932 9 C 0.073 3.927 10 N -0.871 5.871 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.272 1.272 15 N -0.670 5.670 16 C 0.647 3.353 17 O -0.553 6.553 18 O -0.384 6.384 19 C 0.138 3.862 20 C -0.179 4.179 21 C -0.138 4.138 22 C -0.180 4.180 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.260 0.740 31 H 0.379 0.621 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 -6.561 4.370 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.144 4.144 4 H 0.120 0.880 5 C -0.255 4.255 6 C 0.198 3.802 7 C -0.503 4.503 8 H 0.086 0.914 9 C -0.132 4.132 10 N -0.508 5.508 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.197 1.197 15 N -0.325 5.325 16 C 0.399 3.601 17 O -0.440 6.440 18 O -0.300 6.300 19 C 0.100 3.900 20 C -0.236 4.236 21 C -0.195 4.195 22 C -0.237 4.237 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.212 0.788 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.271 -6.113 4.246 8.581 hybrid contribution 0.217 0.238 -0.738 0.805 sum 4.487 -5.875 3.508 8.182 Atomic orbital electron populations 1.21693 0.96573 1.00149 1.01480 1.21021 0.95067 0.96271 1.00518 1.22407 0.95967 0.95802 1.00228 0.87972 1.23610 1.08805 1.00512 0.92581 1.18157 0.85355 0.84218 0.92502 1.20465 1.35965 1.01664 0.92211 0.91374 1.25030 0.94577 0.96053 0.97546 1.70004 1.35766 1.33501 1.11548 0.86531 0.79077 0.82544 0.79455 1.20639 1.21422 1.19701 1.45243 1.01542 1.10435 1.75315 1.18145 0.82866 0.81981 0.77065 1.90815 1.73050 1.26082 1.54051 1.86284 1.18997 1.39044 1.85689 1.21775 0.76644 0.95734 0.95853 1.22463 1.01860 1.03775 0.95523 1.21821 0.99357 0.95664 1.02676 1.22492 1.00653 1.02094 0.98467 0.92690 0.93939 0.93360 0.93446 0.91809 0.89808 0.91394 0.93017 0.78773 0.92757 0.91982 0.89255 0.91828 0.90906 0.91968 0.88795 0.92371 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.87 37.16 0.37 -1.85 16 2 C -0.09 -1.67 5.11 -26.73 -0.14 -1.81 16 3 C -0.12 -2.71 4.92 -90.62 -0.45 -3.16 16 4 H 0.10 2.41 8.08 -51.93 -0.42 1.99 16 5 C -0.22 -4.67 9.81 -26.69 -0.26 -4.93 16 6 C 0.28 6.85 2.04 -132.93 -0.27 6.58 16 7 C -0.46 -12.82 6.96 -34.44 -0.24 -13.06 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.07 2.00 5.44 -17.82 -0.10 1.90 16 10 N -0.87 -24.07 12.86 55.43 0.71 -23.35 16 11 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 N -0.67 -15.51 5.48 -53.52 -0.29 -15.80 16 16 C 0.65 15.18 7.82 54.05 0.42 15.60 16 17 O -0.55 -14.09 10.51 -19.28 -0.20 -14.30 16 18 O -0.38 -7.84 9.94 -40.32 -0.40 -8.24 16 19 C 0.14 2.32 1.13 -90.62 -0.10 2.22 16 20 C -0.18 -2.82 8.37 37.16 0.31 -2.51 16 21 C -0.14 -1.77 8.85 37.16 0.33 -1.44 16 22 C -0.18 -3.15 8.26 37.16 0.31 -2.84 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 27 H 0.06 1.24 7.77 -51.93 -0.40 0.84 16 28 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.07 1.36 8.03 -51.93 -0.42 0.94 16 30 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 31 H 0.38 7.96 7.42 -40.82 -0.30 7.66 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.68 5.99 -51.93 -0.31 1.37 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.96 5.99 -51.93 -0.31 1.65 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -29.48 325.09 -6.89 -36.37 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.77 Total: 8.89 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 0.18 Total: -5.31 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.42 Total: -39.15 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.60 Total: -22.54 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.48 -6.89 -36.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216320012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.858 kcal (2) G-P(sol) polarization free energy of solvation -29.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds