Wall clock time and date at job start Mon Mar 30 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 H 1.09001 * 115.55179 * 330.58309 * 3 2 1 5 5 C 1.53001 * 117.49881 * 116.25593 * 3 2 1 6 6 C 1.52998 * 117.49501 * 184.91535 * 3 2 1 7 7 C 1.50706 * 117.49838 * 145.02211 * 6 3 2 8 8 H 1.07996 * 120.00210 * 114.76294 * 7 6 3 9 9 C 1.37877 * 119.99646 * 294.76796 * 7 6 3 10 10 N 1.31517 * 120.00069 * 4.93672 * 9 7 6 11 11 Si 1.86797 * 119.99890 * 184.93949 * 9 7 6 12 12 H 1.48502 * 109.47374 * 89.99896 * 11 9 7 13 13 H 1.48498 * 109.47327 * 209.99627 * 11 9 7 14 14 H 1.48502 * 109.47111 * 329.99878 * 11 9 7 15 15 N 1.46499 * 117.50250 * 359.97438 * 6 3 2 16 16 C 1.34776 * 120.00034 * 185.84272 * 15 6 3 17 17 O 1.21511 * 119.99999 * 5.01147 * 16 15 6 18 18 O 1.34638 * 120.00098 * 185.01277 * 16 15 6 19 19 C 1.45195 * 117.00326 * 183.24317 * 18 16 15 20 20 C 1.53004 * 109.46912 * 59.90286 * 19 18 16 21 21 C 1.52997 * 109.47230 * 179.90066 * 19 18 16 22 22 C 1.53004 * 109.47129 * 299.90350 * 19 18 16 23 23 H 1.09000 * 109.47073 * 59.99902 * 1 2 3 24 24 H 1.08993 * 109.47400 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46631 * 300.00130 * 1 2 3 26 26 H 1.09000 * 109.47073 * 120.00098 * 2 1 3 27 27 H 1.09000 * 109.46793 * 240.00195 * 2 1 3 28 28 H 1.09000 * 117.49587 * 214.97719 * 5 3 2 29 29 H 1.09001 * 117.49900 * 359.97267 * 5 3 2 30 30 H 0.97002 * 119.99512 * 175.00184 * 10 9 7 31 31 H 0.96996 * 119.99864 * 5.84263 * 15 6 3 32 32 H 1.08992 * 109.47461 * 60.00248 * 20 19 18 33 33 H 1.09000 * 109.47258 * 180.02562 * 20 19 18 34 34 H 1.09003 * 109.46956 * 299.99835 * 20 19 18 35 35 H 1.08995 * 109.47014 * 60.00420 * 21 19 18 36 36 H 1.08998 * 109.47187 * 179.97438 * 21 19 18 37 37 H 1.09001 * 109.47230 * 299.99597 * 21 19 18 38 38 H 1.08996 * 109.46768 * 66.85360 * 22 19 18 39 39 H 1.08997 * 109.46798 * 186.85361 * 22 19 18 40 40 H 1.09000 * 109.47015 * 306.85457 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 -0.4830 5 6 2.8415 1.9085 1.2171 6 6 3.5503 1.6578 -0.1163 7 6 4.0241 2.8616 -0.8894 8 1 4.5548 3.6541 -0.3828 9 6 3.7800 2.9511 -2.2434 10 7 3.0506 2.0349 -2.8421 11 14 4.4853 4.3735 -3.2275 12 1 5.8259 4.0002 -3.7459 13 1 3.5833 4.6834 -4.3657 14 1 4.6075 5.5677 -2.3534 15 7 4.3975 0.4670 -0.2185 16 6 5.7394 0.5914 -0.2045 17 8 6.2467 1.6793 -0.0158 18 8 6.5178 -0.4897 -0.3996 19 6 7.9532 -0.2953 -0.2994 20 6 8.3020 0.2178 1.0992 21 6 8.6666 -1.6259 -0.5471 22 6 8.4035 0.7272 -1.3448 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.7182 2.9439 1.5346 29 1 3.0051 1.1875 2.0181 30 1 2.8183 2.1357 -3.7784 31 1 3.9926 -0.4110 -0.2963 32 1 7.9812 -0.5105 1.8439 33 1 9.3795 0.3643 1.1743 34 1 7.7937 1.1658 1.2756 35 1 8.4182 -1.9914 -1.5434 36 1 9.7442 -1.4798 -0.4723 37 1 8.3459 -2.3542 0.1977 38 1 7.9910 1.7053 -1.0974 39 1 9.4920 0.7833 -1.3526 40 1 8.0483 0.4213 -2.3288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216320012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:37 Heat of formation + Delta-G solvation = -89.481199 kcal Electronic energy + Delta-G solvation = -20345.529673 eV Core-core repulsion = 17353.171937 eV Total energy + Delta-G solvation = -2992.357735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.41949 -39.37818 -37.28515 -35.00920 -34.43668 -33.60733 -32.05892 -28.29512 -28.22120 -27.59019 -24.56963 -24.02275 -21.75389 -20.80655 -20.66355 -19.04018 -18.41580 -17.07846 -16.82250 -16.60363 -15.96169 -15.56185 -15.34817 -15.12915 -14.69728 -14.41426 -13.96149 -13.62045 -13.25021 -13.14600 -12.93424 -12.83536 -12.77429 -12.72823 -12.69808 -12.54760 -12.41941 -12.15693 -12.07827 -11.79750 -11.63599 -11.23130 -11.00638 -10.81046 -10.69761 -10.13562 -9.19751 -8.14120 -6.22988 1.32133 1.37002 1.46142 1.57347 2.25797 2.38802 3.11415 3.47606 3.61148 3.87564 3.89512 4.04080 4.14630 4.40518 4.48721 4.58291 4.61661 4.66260 4.79291 4.80324 4.84357 4.87936 4.92839 4.94343 5.04835 5.10213 5.15379 5.26529 5.36958 5.44344 5.44952 5.49706 5.66012 5.73122 5.75538 6.10888 6.29741 6.78382 7.03611 7.42986 7.91930 8.90446 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.008909 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.780427 B = 3142.278960 C = 4258.913114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 C -0.111 4.111 4 H 0.079 0.921 5 C -0.202 4.202 6 C 0.247 3.753 7 C -0.480 4.480 8 H 0.040 0.960 9 C 0.036 3.964 10 N -0.888 5.888 11 Si 0.941 3.059 12 H -0.289 1.289 13 H -0.274 1.274 14 H -0.272 1.272 15 N -0.668 5.668 16 C 0.642 3.358 17 O -0.580 6.580 18 O -0.385 6.385 19 C 0.121 3.879 20 C -0.172 4.172 21 C -0.130 4.130 22 C -0.176 4.176 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.261 0.739 31 H 0.390 0.610 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 -8.246 4.930 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 C -0.131 4.131 4 H 0.097 0.903 5 C -0.241 4.241 6 C 0.164 3.836 7 C -0.519 4.519 8 H 0.058 0.942 9 C -0.167 4.167 10 N -0.525 5.525 11 Si 0.768 3.232 12 H -0.216 1.216 13 H -0.199 1.199 14 H -0.197 1.197 15 N -0.324 5.324 16 C 0.395 3.605 17 O -0.469 6.469 18 O -0.301 6.301 19 C 0.084 3.916 20 C -0.230 4.230 21 C -0.187 4.187 22 C -0.233 4.233 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.224 0.776 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.822 -7.816 4.805 10.365 hybrid contribution 0.141 0.759 -0.873 1.165 sum 4.963 -7.057 3.932 9.482 Atomic orbital electron populations 1.21639 0.94328 1.01885 1.01459 1.20990 0.96999 0.93597 1.00733 1.22357 0.93892 0.97486 0.99340 0.90269 1.23602 1.07214 1.00917 0.92346 1.18126 0.86918 0.84094 0.94491 1.20495 1.35927 1.02577 0.92892 0.94203 1.25530 0.94950 0.97991 0.98182 1.70051 1.36491 1.34355 1.11625 0.85832 0.78178 0.80529 0.78686 1.21563 1.19914 1.19716 1.44935 1.01666 1.10497 1.75268 1.18266 0.83160 0.82268 0.76786 1.90813 1.73615 1.27394 1.55091 1.86283 1.20979 1.37579 1.85263 1.22340 0.74828 0.98102 0.96281 1.22388 1.03520 1.01998 0.95054 1.21840 1.00657 0.93163 1.02992 1.22439 1.02865 1.00105 0.97936 0.93880 0.91315 0.92263 0.91568 0.93149 0.90251 0.89285 0.92986 0.77572 0.91652 0.88794 0.92964 0.91900 0.87635 0.90825 0.92832 0.88628 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 9.87 71.98 0.71 -3.25 16 2 C -0.09 -3.01 5.11 30.60 0.16 -2.85 16 3 C -0.11 -4.82 4.92 -10.79 -0.05 -4.88 16 4 H 0.08 3.79 8.08 -2.39 -0.02 3.77 16 5 C -0.20 -8.67 9.81 30.62 0.30 -8.37 16 6 C 0.25 12.24 2.04 2.88 0.01 12.24 16 7 C -0.48 -27.37 6.96 25.60 0.18 -27.19 16 8 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 9 C 0.04 2.02 5.44 84.65 0.46 2.48 16 10 N -0.89 -49.74 12.86 21.45 0.28 -49.47 16 11 Si 0.94 45.82 29.54 68.60 2.03 47.84 16 12 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 14 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 15 N -0.67 -31.09 5.48 -553.64 -3.03 -34.13 16 16 C 0.64 30.57 7.82 129.79 1.02 31.59 16 17 O -0.58 -30.60 10.51 19.81 0.21 -30.39 16 18 O -0.38 -15.58 9.94 -55.48 -0.55 -16.13 16 19 C 0.12 3.90 1.13 -10.79 -0.01 3.89 16 20 C -0.17 -5.16 8.37 71.98 0.60 -4.56 16 21 C -0.13 -2.90 8.85 71.98 0.64 -2.26 16 22 C -0.18 -6.07 8.26 71.98 0.59 -5.47 16 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 2.07 7.88 -2.39 -0.02 2.06 16 27 H 0.05 1.91 7.77 -2.39 -0.02 1.89 16 28 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 29 H 0.09 3.41 8.03 -2.39 -0.02 3.40 16 30 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 31 H 0.39 16.23 7.42 -92.71 -0.69 15.54 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.05 1.98 5.99 -2.39 -0.01 1.96 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 2.29 5.99 -2.39 -0.01 2.28 16 39 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -65.69 325.09 3.84 -61.85 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.32 Total: 29.03 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.60 Total: -8.61 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.76 Total: -83.59 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.34 Total: -46.52 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -65.69 3.84 -61.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216320012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.634 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds