Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.52995 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.47415 * 48.85340 * 4 3 2 6 6 C 1.50707 * 109.47451 * 168.85075 * 4 3 2 7 7 O 1.20825 * 119.99555 * 119.99996 * 6 4 3 8 8 O 1.34224 * 119.99672 * 300.00248 * 6 4 3 9 9 N 1.46498 * 109.47163 * 288.85508 * 4 3 2 10 10 C 1.36937 * 119.99822 * 291.27835 * 9 4 3 11 11 H 1.08003 * 119.99792 * 213.18646 * 10 9 4 12 12 C 1.38810 * 120.00272 * 33.18313 * 10 9 4 13 13 N 1.31620 * 120.00098 * 302.39824 * 12 10 9 14 14 Si 1.86794 * 120.00045 * 122.38756 * 12 10 9 15 15 H 1.48503 * 109.47063 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47140 * 120.00409 * 14 12 10 17 17 H 1.48505 * 109.47633 * 240.00635 * 14 12 10 18 18 C 1.46502 * 120.00296 * 111.27842 * 9 4 3 19 19 C 1.54262 * 110.03028 * 237.16800 * 18 9 4 20 20 C 1.54894 * 104.19384 * 217.10377 * 19 18 9 21 21 C 1.54895 * 102.74988 * 37.94111 * 20 19 18 22 22 C 1.53872 * 110.03015 * 119.99850 * 18 9 4 23 23 H 1.08999 * 109.47119 * 300.00184 * 1 2 3 24 24 H 1.08998 * 109.46466 * 60.00570 * 1 2 3 25 25 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47315 * 239.99336 * 2 1 3 27 27 H 1.09000 * 109.46977 * 119.99316 * 2 1 3 28 28 H 1.08996 * 109.47584 * 59.99501 * 3 2 1 29 29 H 1.08999 * 109.47044 * 299.99887 * 3 2 1 30 30 H 0.96706 * 116.99724 * 179.97438 * 8 6 4 31 31 H 0.96998 * 120.00018 * 179.97438 * 13 12 10 32 32 H 1.08995 * 110.01614 * 358.61271 * 18 9 4 33 33 H 1.08993 * 110.48868 * 335.78017 * 19 18 9 34 34 H 1.08997 * 110.48681 * 98.42977 * 19 18 9 35 35 H 1.09001 * 110.75496 * 279.63099 * 20 19 18 36 36 H 1.08993 * 110.75896 * 156.25664 * 20 19 18 37 37 H 1.08995 * 110.49056 * 203.37786 * 21 20 19 38 38 H 1.09004 * 110.59536 * 80.79311 * 21 20 19 39 39 H 1.09000 * 110.03463 * 238.56729 * 22 18 9 40 40 H 1.08997 * 110.03962 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9338 0.7662 -0.7730 6 6 4.0725 2.8365 -0.2741 7 8 4.7668 3.3995 0.5388 8 8 3.7487 3.4525 -1.4218 9 7 4.0578 0.9964 1.3080 10 6 3.8798 1.7873 2.4116 11 1 4.6191 1.7902 3.1988 12 6 2.7492 2.5855 2.5183 13 7 2.4832 3.4778 1.5880 14 14 1.6050 2.3932 3.9823 15 1 2.1237 1.3298 4.8796 16 1 1.5329 3.6764 4.7261 17 1 0.2488 2.0208 3.5052 18 6 4.7361 -0.2960 1.4348 19 6 4.0028 -1.1786 2.4658 20 6 5.1407 -1.9326 3.1978 21 6 6.2499 -0.8568 3.3049 22 6 6.1647 -0.0913 1.9683 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 4.0942 4.3462 -1.5531 31 1 1.6929 4.0353 1.6624 32 1 4.7670 -0.7975 0.4676 33 1 3.4420 -0.5606 3.1669 34 1 3.3406 -1.8831 1.9625 35 1 5.4828 -2.7828 2.6077 36 1 4.8170 -2.2535 4.1879 37 1 7.2275 -1.3263 3.4141 38 1 6.0543 -0.1863 4.1418 39 1 6.8890 -0.4944 1.2605 40 1 6.3534 0.9695 2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216499094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = -60.583165 kcal Electronic energy + Delta-G solvation = -21234.262343 eV Core-core repulsion = 18243.157720 eV Total energy + Delta-G solvation = -2991.104622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.96152 -37.59155 -35.46425 -34.34423 -32.76882 -31.46224 -28.80263 -27.91019 -26.49365 -24.25074 -22.98145 -20.40402 -19.96387 -19.70179 -19.12879 -16.52469 -16.46926 -15.57133 -14.95565 -14.50089 -14.22325 -14.16615 -13.88647 -13.33690 -12.91613 -12.61363 -12.42895 -12.13861 -11.84962 -11.47015 -11.21374 -10.98847 -10.82948 -10.68762 -10.45948 -10.40320 -10.34489 -10.25934 -10.07574 -9.97609 -9.90744 -9.73215 -9.67914 -9.63021 -8.61937 -7.50454 -6.78112 -6.33098 -3.03461 3.37641 3.55607 3.61056 4.04357 4.35298 4.67168 4.90569 5.29681 5.39503 5.41160 5.63811 5.75111 5.81161 5.93172 6.06057 6.19234 6.24645 6.25381 6.37625 6.42822 6.45433 6.52170 6.54467 6.60681 6.63801 6.72778 6.78566 6.90516 6.94545 7.02572 7.20822 7.21357 7.29410 7.76525 7.86335 8.04473 8.35763 9.04794 9.62229 9.80054 10.36459 10.80684 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.011039 C = 0.010174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.687020 B = 2535.951724 C = 2751.538740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.140 4.140 4 C 0.202 3.798 5 H 0.058 0.942 6 C 0.482 3.518 7 O -0.478 6.478 8 O -0.549 6.549 9 N -0.566 5.566 10 C -0.278 4.278 11 H 0.081 0.919 12 C 0.068 3.932 13 N -0.806 5.806 14 Si 0.803 3.197 15 H -0.273 1.273 16 H -0.296 1.296 17 H -0.284 1.284 18 C 0.185 3.815 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.141 4.141 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.043 0.957 30 H 0.379 0.621 31 H 0.258 0.742 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -7.129 -3.497 8.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.179 4.179 4 C 0.093 3.907 5 H 0.075 0.925 6 C 0.320 3.680 7 O -0.360 6.360 8 O -0.361 6.361 9 N -0.287 5.287 10 C -0.403 4.403 11 H 0.099 0.901 12 C -0.135 4.135 13 N -0.443 5.443 14 Si 0.626 3.374 15 H -0.198 1.198 16 H -0.223 1.223 17 H -0.210 1.210 18 C 0.077 3.923 19 C -0.169 4.169 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.181 4.181 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.062 0.938 30 H 0.235 0.765 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.009 -7.213 -3.273 7.985 hybrid contribution -0.554 0.777 0.710 1.190 sum 0.455 -6.435 -2.563 6.942 Atomic orbital electron populations 1.21730 0.97327 1.00085 1.01209 1.21518 0.94406 0.98767 1.00964 1.22782 0.94895 0.95273 1.04938 1.19964 0.94837 0.87429 0.88446 0.92459 1.24183 0.77247 0.89448 0.77100 1.90540 1.36121 1.65179 1.44160 1.84610 1.74349 1.33425 1.43680 1.44305 1.67088 1.15010 1.02274 1.18392 1.01523 1.24643 0.95778 0.90143 1.25014 0.98277 0.95707 0.94543 1.70682 1.24058 1.12733 1.36864 0.87695 0.83880 0.78746 0.87051 1.19775 1.22321 1.21017 1.20928 0.90149 0.85358 0.95830 1.22786 0.97144 0.97677 0.99339 1.22431 0.96830 0.97319 0.99545 1.22241 0.97214 0.97379 0.98619 1.22722 0.98220 1.01397 0.95715 0.93159 0.93556 0.93924 0.94079 0.91405 0.86434 0.93789 0.76508 0.93090 0.92939 0.89502 0.93231 0.92698 0.92713 0.93379 0.91896 0.93745 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.12 -2.18 5.84 -26.73 -0.16 -2.33 16 3 C -0.14 -2.99 4.18 -26.74 -0.11 -3.10 16 4 C 0.20 4.47 2.55 -69.08 -0.18 4.29 16 5 H 0.06 1.16 7.57 -51.92 -0.39 0.77 16 6 C 0.48 11.50 5.64 36.01 0.20 11.70 16 7 O -0.48 -13.06 14.46 -18.75 -0.27 -13.33 16 8 O -0.55 -11.31 13.13 -39.24 -0.52 -11.82 16 9 N -0.57 -12.76 2.01 -158.19 -0.32 -13.08 16 10 C -0.28 -7.11 5.74 -15.06 -0.09 -7.20 16 11 H 0.08 2.19 7.44 -52.48 -0.39 1.80 16 12 C 0.07 1.77 3.40 -17.43 -0.06 1.71 16 13 N -0.81 -21.39 7.58 55.49 0.42 -20.97 16 14 Si 0.80 19.62 29.64 -169.99 -5.04 14.58 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 C 0.18 3.53 3.43 -66.81 -0.23 3.30 16 19 C -0.13 -2.32 5.72 -25.07 -0.14 -2.46 16 20 C -0.12 -1.88 6.91 -24.73 -0.17 -2.05 16 21 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 22 C -0.14 -2.58 6.15 -25.61 -0.16 -2.74 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.30 6.85 -51.93 -0.36 0.95 16 28 H 0.12 2.87 3.82 -51.93 -0.20 2.67 16 29 H 0.04 0.94 7.85 -51.93 -0.41 0.53 16 30 H 0.38 6.40 9.10 45.56 0.41 6.82 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.36 16 32 H 0.05 0.93 7.61 -51.93 -0.40 0.54 16 33 H 0.09 1.80 7.00 -51.93 -0.36 1.43 16 34 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.65 7.10 -51.93 -0.37 1.28 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -28.47 308.16 -7.77 -36.24 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.80 Total: 6.72 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.89 Total: -2.98 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.10 Total: -34.05 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.79 Total: -25.16 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.04 Total: 14.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.47 -7.77 -36.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216499094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.346 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds