Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.52995 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.47415 * 48.85340 * 4 3 2 6 6 C 1.50707 * 109.47451 * 168.85075 * 4 3 2 7 7 O 1.20825 * 119.99555 * 119.99996 * 6 4 3 8 8 O 1.34224 * 119.99672 * 300.00248 * 6 4 3 9 9 N 1.46498 * 109.47163 * 288.85508 * 4 3 2 10 10 C 1.36937 * 119.99822 * 291.27835 * 9 4 3 11 11 H 1.08003 * 119.99792 * 213.18646 * 10 9 4 12 12 C 1.38810 * 120.00272 * 33.18313 * 10 9 4 13 13 N 1.31620 * 120.00098 * 302.39824 * 12 10 9 14 14 Si 1.86794 * 120.00045 * 122.38756 * 12 10 9 15 15 H 1.48503 * 109.47063 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47140 * 120.00409 * 14 12 10 17 17 H 1.48505 * 109.47633 * 240.00635 * 14 12 10 18 18 C 1.46502 * 120.00296 * 111.27842 * 9 4 3 19 19 C 1.54262 * 110.03028 * 237.16800 * 18 9 4 20 20 C 1.54894 * 104.19384 * 217.10377 * 19 18 9 21 21 C 1.54895 * 102.74988 * 37.94111 * 20 19 18 22 22 C 1.53872 * 110.03015 * 119.99850 * 18 9 4 23 23 H 1.08999 * 109.47119 * 300.00184 * 1 2 3 24 24 H 1.08998 * 109.46466 * 60.00570 * 1 2 3 25 25 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47315 * 239.99336 * 2 1 3 27 27 H 1.09000 * 109.46977 * 119.99316 * 2 1 3 28 28 H 1.08996 * 109.47584 * 59.99501 * 3 2 1 29 29 H 1.08999 * 109.47044 * 299.99887 * 3 2 1 30 30 H 0.96706 * 116.99724 * 179.97438 * 8 6 4 31 31 H 0.96998 * 120.00018 * 179.97438 * 13 12 10 32 32 H 1.08995 * 110.01614 * 358.61271 * 18 9 4 33 33 H 1.08993 * 110.48868 * 335.78017 * 19 18 9 34 34 H 1.08997 * 110.48681 * 98.42977 * 19 18 9 35 35 H 1.09001 * 110.75496 * 279.63099 * 20 19 18 36 36 H 1.08993 * 110.75896 * 156.25664 * 20 19 18 37 37 H 1.08995 * 110.49056 * 203.37786 * 21 20 19 38 38 H 1.09004 * 110.59536 * 80.79311 * 21 20 19 39 39 H 1.09000 * 110.03463 * 238.56729 * 22 18 9 40 40 H 1.08997 * 110.03962 * 0.02562 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9338 0.7662 -0.7730 6 6 4.0725 2.8365 -0.2741 7 8 4.7668 3.3995 0.5388 8 8 3.7487 3.4525 -1.4218 9 7 4.0578 0.9964 1.3080 10 6 3.8798 1.7873 2.4116 11 1 4.6191 1.7902 3.1988 12 6 2.7492 2.5855 2.5183 13 7 2.4832 3.4778 1.5880 14 14 1.6050 2.3932 3.9823 15 1 2.1237 1.3298 4.8796 16 1 1.5329 3.6764 4.7261 17 1 0.2488 2.0208 3.5052 18 6 4.7361 -0.2960 1.4348 19 6 4.0028 -1.1786 2.4658 20 6 5.1407 -1.9326 3.1978 21 6 6.2499 -0.8568 3.3049 22 6 6.1647 -0.0913 1.9683 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 4.0942 4.3462 -1.5531 31 1 1.6929 4.0353 1.6624 32 1 4.7670 -0.7975 0.4676 33 1 3.4420 -0.5606 3.1669 34 1 3.3406 -1.8831 1.9625 35 1 5.4828 -2.7828 2.6077 36 1 4.8170 -2.2535 4.1879 37 1 7.2275 -1.3263 3.4141 38 1 6.0543 -0.1863 4.1418 39 1 6.8890 -0.4944 1.2605 40 1 6.3534 0.9695 2.1333 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216499094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = -76.424148 kcal Electronic energy + Delta-G solvation = -21234.949259 eV Core-core repulsion = 18243.157720 eV Total energy + Delta-G solvation = -2991.791539 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.74963 -39.16705 -37.06720 -36.17115 -34.42377 -33.26223 -30.37502 -29.30156 -28.14189 -25.89519 -24.73179 -21.96095 -21.51594 -21.22506 -20.71398 -18.38035 -18.26123 -17.26583 -16.67257 -16.13289 -15.93413 -15.73729 -15.59018 -14.90239 -14.43694 -14.26667 -13.98292 -13.79338 -13.48566 -13.18858 -12.93667 -12.74651 -12.48232 -12.23407 -12.09208 -11.93346 -11.88171 -11.78995 -11.72023 -11.67797 -11.44930 -11.30059 -11.25264 -11.16243 -10.49633 -9.43026 -8.57986 -8.31653 -4.98794 1.37473 1.53671 1.60270 2.19364 2.50744 2.82404 2.98293 3.61058 4.03235 4.05664 4.28106 4.33267 4.42711 4.48270 4.60242 4.73535 4.82616 4.95031 4.98225 5.00507 5.04970 5.09132 5.11394 5.18130 5.24100 5.28902 5.37702 5.41663 5.45508 5.57262 5.69049 5.71044 5.80431 5.84500 6.07421 6.33220 6.39923 7.15224 7.78293 7.96676 8.45777 8.82521 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.011039 C = 0.010174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.687020 B = 2535.951724 C = 2751.538740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.133 4.133 4 C 0.196 3.804 5 H 0.082 0.918 6 C 0.482 3.518 7 O -0.523 6.523 8 O -0.541 6.541 9 N -0.572 5.572 10 C -0.266 4.266 11 H 0.056 0.944 12 C 0.040 3.960 13 N -0.822 5.822 14 Si 0.841 3.159 15 H -0.276 1.276 16 H -0.311 1.311 17 H -0.284 1.284 18 C 0.174 3.826 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.137 4.137 23 H 0.028 0.972 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.397 0.603 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -9.577 -4.625 10.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.173 4.173 4 C 0.087 3.913 5 H 0.100 0.900 6 C 0.322 3.678 7 O -0.408 6.408 8 O -0.353 6.353 9 N -0.293 5.293 10 C -0.393 4.393 11 H 0.073 0.927 12 C -0.162 4.162 13 N -0.460 5.460 14 Si 0.667 3.333 15 H -0.201 1.201 16 H -0.240 1.240 17 H -0.210 1.210 18 C 0.068 3.932 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.177 4.177 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.059 0.941 30 H 0.254 0.746 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.019 -9.681 -4.415 10.689 hybrid contribution -0.495 1.565 0.999 1.922 sum 0.524 -8.116 -3.416 8.821 Atomic orbital electron populations 1.21693 0.96040 1.01593 1.00649 1.21450 0.95525 0.96516 1.01548 1.22603 0.94244 0.97182 1.03256 1.20145 0.95341 0.87026 0.88757 0.89994 1.24605 0.76117 0.90131 0.76949 1.90526 1.38144 1.66423 1.45728 1.84542 1.73902 1.34651 1.42181 1.44405 1.67400 1.15749 1.01784 1.18189 1.00704 1.24295 0.96098 0.92667 1.25211 0.99186 0.96209 0.95593 1.70717 1.24140 1.13342 1.37808 0.87115 0.83152 0.77595 0.85447 1.20145 1.23963 1.20991 1.21247 0.90255 0.84209 0.97452 1.22686 0.97853 0.97513 0.98497 1.22407 0.95044 0.97342 1.00258 1.22219 0.99203 0.97278 0.96521 1.22636 0.98359 0.99177 0.97506 0.95230 0.92634 0.91371 0.91730 0.92396 0.89311 0.94094 0.74559 0.93536 0.90776 0.93074 0.91424 0.89838 0.91780 0.90753 0.94138 0.91584 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.91 71.98 0.71 -3.65 16 2 C -0.11 -3.85 5.84 30.60 0.18 -3.67 16 3 C -0.13 -5.56 4.18 30.59 0.13 -5.43 16 4 C 0.20 8.46 2.55 44.25 0.11 8.57 16 5 H 0.08 3.11 7.57 -2.38 -0.02 3.09 16 6 C 0.48 22.84 5.64 71.24 0.40 23.24 16 7 O -0.52 -29.03 14.46 21.97 0.32 -28.71 16 8 O -0.54 -21.69 13.13 -51.36 -0.67 -22.36 16 9 N -0.57 -25.60 2.01 -654.40 -1.31 -26.92 16 10 C -0.27 -13.92 5.74 84.03 0.48 -13.43 16 11 H 0.06 3.15 7.44 -2.91 -0.02 3.13 16 12 C 0.04 2.12 3.40 84.86 0.29 2.41 16 13 N -0.82 -44.45 7.58 21.65 0.16 -44.29 16 14 Si 0.84 41.53 29.64 68.60 2.03 43.56 16 15 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 17 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 18 C 0.17 6.37 3.43 45.71 0.16 6.53 16 19 C -0.13 -4.24 5.72 31.67 0.18 -4.06 16 20 C -0.11 -3.09 6.91 31.89 0.22 -2.87 16 21 C -0.11 -3.51 6.83 31.67 0.22 -3.29 16 22 C -0.14 -4.87 6.15 31.32 0.19 -4.68 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 2.09 6.85 -2.39 -0.02 2.08 16 28 H 0.09 4.33 3.82 -2.39 -0.01 4.32 16 29 H 0.04 1.69 7.85 -2.39 -0.02 1.67 16 30 H 0.40 13.00 9.10 -74.05 -0.67 12.33 16 31 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.07 2.39 7.61 -2.39 -0.02 2.37 16 33 H 0.05 2.09 7.00 -2.39 -0.02 2.07 16 34 H 0.07 2.00 7.77 -2.39 -0.02 1.98 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.03 1.50 7.10 -2.39 -0.02 1.49 16 Total: -1.00 -62.41 308.16 4.15 -58.26 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.35 Total: 20.78 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 3.27 Total: -0.33 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.15 Total: -71.20 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.36 Total: -51.07 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -62.41 4.15 -58.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216499094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.160 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds