Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 C 1.53008 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.90351 * 59.30067 * 4 3 2 6 6 O 1.20833 * 119.99655 * 265.34445 * 5 4 3 7 7 O 1.34222 * 120.00432 * 85.62712 * 5 4 3 8 8 C 1.53994 * 109.91755 * 298.19449 * 4 3 2 9 9 C 1.54596 * 105.13692 * 241.67504 * 8 4 3 10 10 C 1.54932 * 102.92406 * 21.95988 * 9 8 4 11 11 N 1.47901 * 110.07757 * 180.50389 * 4 3 2 12 12 C 1.46893 * 111.00649 * 333.60356 * 11 4 3 13 13 C 1.52998 * 109.47704 * 169.99903 * 12 11 4 14 14 C 1.50697 * 109.47419 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99897 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99886 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99931 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46773 * 90.00413 * 18 16 14 20 20 H 1.48499 * 109.47069 * 210.00098 * 18 16 14 21 21 H 1.48496 * 109.47324 * 330.00084 * 18 16 14 22 22 H 1.09000 * 109.47187 * 60.00276 * 1 2 3 23 23 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47139 * 299.99802 * 1 2 3 25 25 H 1.08994 * 109.47153 * 239.99919 * 2 1 3 26 26 H 1.09000 * 109.47187 * 119.99724 * 2 1 3 27 27 H 1.08994 * 109.47314 * 60.00018 * 3 2 1 28 28 H 1.09000 * 109.47006 * 299.99834 * 3 2 1 29 29 H 0.96701 * 117.00458 * 179.72178 * 7 5 4 30 30 H 1.08997 * 110.30436 * 0.58941 * 8 4 3 31 31 H 1.08998 * 110.30535 * 122.66182 * 8 4 3 32 32 H 1.09001 * 110.72037 * 140.31508 * 9 8 4 33 33 H 1.08995 * 110.72283 * 263.41717 * 9 8 4 34 34 H 1.08997 * 110.66987 * 81.01717 * 10 9 8 35 35 H 1.08999 * 110.66685 * 203.98375 * 10 9 8 36 36 H 1.09010 * 109.46865 * 290.00210 * 12 11 4 37 37 H 1.09004 * 109.47296 * 49.99683 * 12 11 4 38 38 H 1.08999 * 109.46899 * 300.00515 * 13 12 11 39 39 H 1.09004 * 109.46925 * 59.99552 * 13 12 11 40 40 H 0.96994 * 119.99498 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0835 0.7190 -1.2174 6 8 4.3691 -0.4531 -1.1482 7 8 4.2292 1.3777 -2.3777 8 6 4.0941 0.7587 1.2770 9 6 4.8970 1.8512 2.0198 10 6 4.3125 3.1643 1.4414 11 7 4.0777 2.8316 0.0129 12 6 3.1050 3.7531 -0.5893 13 6 3.5461 5.1963 -0.3375 14 6 2.5485 6.1416 -0.9558 15 1 1.6859 5.7520 -1.4759 16 6 2.7370 7.5039 -0.8575 17 7 1.8662 8.3289 -1.3966 18 14 4.2287 8.1778 0.0427 19 1 5.3520 8.3420 -0.9145 20 1 3.8923 9.4944 0.6416 21 1 4.6274 7.2329 1.1166 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 4.5658 0.8724 -3.1303 30 1 3.2616 0.4170 1.8921 31 1 4.7417 -0.0790 1.0186 32 1 4.7247 1.7929 3.0945 33 1 5.9604 1.7676 1.7959 34 1 3.3752 3.4190 1.9360 35 1 5.0299 3.9794 1.5363 36 1 3.0494 3.5721 -1.6628 37 1 2.1245 3.5896 -0.1420 38 1 3.6017 5.3772 0.7359 39 1 4.5266 5.3599 -0.7848 40 1 1.9990 9.2872 -1.3278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233430733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -97.831726 kcal Electronic energy + Delta-G solvation = -20289.589923 eV Core-core repulsion = 17296.870081 eV Total energy + Delta-G solvation = -2992.719841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90418 -38.63659 -36.00003 -34.64992 -33.65946 -32.01062 -30.26133 -28.83414 -25.82725 -24.73226 -23.29796 -22.17560 -21.42546 -19.72075 -19.02897 -17.71420 -17.06847 -16.44311 -15.86345 -15.25258 -14.87617 -14.38513 -14.17282 -14.07081 -13.71731 -13.36077 -12.80182 -12.56551 -12.49587 -12.24935 -11.96758 -11.71443 -11.52001 -11.36271 -11.23239 -11.02576 -10.96174 -10.84590 -10.64679 -10.54542 -10.25492 -10.05948 -9.76570 -9.75592 -9.19760 -8.54441 -8.05130 -6.05250 -4.03369 2.34356 3.22946 3.31462 3.38503 3.41655 4.13523 4.44858 4.57231 4.63316 4.88550 5.00916 5.02610 5.17766 5.29350 5.43302 5.46422 5.48673 5.66697 5.72562 5.73919 5.82881 5.90308 5.99377 6.03737 6.07599 6.12617 6.22330 6.24772 6.28251 6.34177 6.65408 6.74401 7.05392 7.16099 7.37932 7.53225 7.81738 8.11423 8.51971 8.98907 9.57140 11.08097 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.006238 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.586503 B = 4487.889590 C = 4780.205993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.136 4.136 4 C 0.102 3.898 5 C 0.509 3.491 6 O -0.529 6.529 7 O -0.495 6.495 8 C -0.117 4.117 9 C -0.126 4.126 10 C 0.037 3.963 11 N -0.502 5.502 12 C 0.054 3.946 13 C -0.010 4.010 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.903 5.903 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.266 1.266 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.400 0.600 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.016 0.984 39 H 0.020 0.980 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -15.996 4.963 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.174 4.174 4 C 0.010 3.990 5 C 0.352 3.648 6 O -0.418 6.418 7 O -0.304 6.304 8 C -0.155 4.155 9 C -0.164 4.164 10 C -0.090 4.090 11 N -0.227 5.227 12 C -0.072 4.072 13 C -0.048 4.048 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.258 0.742 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.034 0.966 39 H 0.038 0.962 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.045 -15.826 4.966 16.864 hybrid contribution 0.183 0.200 0.228 0.354 sum 3.229 -15.627 5.194 16.781 Atomic orbital electron populations 1.21755 0.95450 1.01461 1.02160 1.21622 0.96193 0.96133 1.02531 1.22261 0.92625 0.97976 1.04537 1.21574 0.94596 0.92218 0.90600 1.23243 0.72505 0.84911 0.84175 1.90656 1.48140 1.17742 1.85253 1.84711 1.77957 1.46903 1.20794 1.22520 1.00646 0.98717 0.93598 1.22561 1.00212 0.94346 0.99330 1.23214 1.00418 0.97463 0.87937 1.64925 1.43091 0.99160 1.15510 1.22491 0.92212 0.93011 0.99506 1.19630 0.97441 0.90982 0.96732 1.21050 1.08946 0.90400 1.35393 0.91060 1.24991 0.96220 0.97005 0.95119 1.69913 1.35998 1.02972 1.45347 0.86765 0.83507 0.78236 0.80683 1.20240 1.21503 1.19047 0.92533 0.92817 0.92579 0.92050 0.91496 0.89878 0.89684 0.74234 0.90162 0.89604 0.90834 0.90832 0.93088 0.89381 0.90443 0.94131 0.96582 0.96205 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.21 16 2 C -0.13 -1.49 5.38 -26.73 -0.14 -1.63 16 3 C -0.14 -1.83 2.78 -26.73 -0.07 -1.91 16 4 C 0.10 1.48 0.60 -131.68 -0.08 1.41 16 5 C 0.51 7.71 6.18 36.00 0.22 7.93 16 6 O -0.53 -8.52 15.76 -18.76 -0.30 -8.82 16 7 O -0.49 -7.02 12.54 -39.24 -0.49 -7.51 16 8 C -0.12 -1.46 5.53 -25.37 -0.14 -1.60 16 9 C -0.13 -1.53 7.06 -24.87 -0.18 -1.71 16 10 C 0.04 0.57 5.09 -1.90 -0.01 0.56 16 11 N -0.50 -8.52 4.81 -216.32 -1.04 -9.56 16 12 C 0.05 1.07 3.82 -3.83 -0.01 1.06 16 13 C -0.01 -0.24 3.70 -27.89 -0.10 -0.34 16 14 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.79 6.84 -51.93 -0.36 0.43 16 26 H 0.07 0.74 6.57 -51.93 -0.34 0.39 16 27 H 0.08 1.11 7.70 -51.93 -0.40 0.71 16 28 H 0.08 1.26 6.67 -51.93 -0.35 0.92 16 29 H 0.40 3.71 9.10 45.56 0.41 4.12 16 30 H 0.08 0.88 6.45 -51.93 -0.33 0.54 16 31 H 0.09 1.12 6.78 -51.93 -0.35 0.77 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 35 H 0.09 1.41 7.67 -51.93 -0.40 1.01 16 36 H 0.08 1.61 7.60 -51.92 -0.39 1.21 16 37 H 0.04 0.78 5.69 -51.93 -0.30 0.49 16 38 H 0.02 0.37 5.85 -51.93 -0.30 0.07 16 39 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -32.07 309.97 -7.25 -39.31 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.61 Total: 2.36 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -0.58 Total: -10.55 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.27 Total: -36.48 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.79 Total: -16.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.07 -7.25 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233430733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.520 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds