Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46838 * 2 1 4 4 C 1.53008 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.90351 * 59.30067 * 4 3 2 6 6 O 1.20833 * 119.99655 * 265.34445 * 5 4 3 7 7 O 1.34222 * 120.00432 * 85.62712 * 5 4 3 8 8 C 1.53994 * 109.91755 * 298.19449 * 4 3 2 9 9 C 1.54596 * 105.13692 * 241.67504 * 8 4 3 10 10 C 1.54932 * 102.92406 * 21.95988 * 9 8 4 11 11 N 1.47901 * 110.07757 * 180.50389 * 4 3 2 12 12 C 1.46893 * 111.00649 * 333.60356 * 11 4 3 13 13 C 1.52998 * 109.47704 * 169.99903 * 12 11 4 14 14 C 1.50697 * 109.47419 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00029 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99897 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99886 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99931 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46773 * 90.00413 * 18 16 14 20 20 H 1.48499 * 109.47069 * 210.00098 * 18 16 14 21 21 H 1.48496 * 109.47324 * 330.00084 * 18 16 14 22 22 H 1.09000 * 109.47187 * 60.00276 * 1 2 3 23 23 H 1.08998 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47139 * 299.99802 * 1 2 3 25 25 H 1.08994 * 109.47153 * 239.99919 * 2 1 3 26 26 H 1.09000 * 109.47187 * 119.99724 * 2 1 3 27 27 H 1.08994 * 109.47314 * 60.00018 * 3 2 1 28 28 H 1.09000 * 109.47006 * 299.99834 * 3 2 1 29 29 H 0.96701 * 117.00458 * 179.72178 * 7 5 4 30 30 H 1.08997 * 110.30436 * 0.58941 * 8 4 3 31 31 H 1.08998 * 110.30535 * 122.66182 * 8 4 3 32 32 H 1.09001 * 110.72037 * 140.31508 * 9 8 4 33 33 H 1.08995 * 110.72283 * 263.41717 * 9 8 4 34 34 H 1.08997 * 110.66987 * 81.01717 * 10 9 8 35 35 H 1.08999 * 110.66685 * 203.98375 * 10 9 8 36 36 H 1.09010 * 109.46865 * 290.00210 * 12 11 4 37 37 H 1.09004 * 109.47296 * 49.99683 * 12 11 4 38 38 H 1.08999 * 109.46899 * 300.00515 * 13 12 11 39 39 H 1.09004 * 109.46925 * 59.99552 * 13 12 11 40 40 H 0.96994 * 119.99498 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0835 0.7190 -1.2174 6 8 4.3691 -0.4531 -1.1482 7 8 4.2292 1.3777 -2.3777 8 6 4.0941 0.7587 1.2770 9 6 4.8970 1.8512 2.0198 10 6 4.3125 3.1643 1.4414 11 7 4.0777 2.8316 0.0129 12 6 3.1050 3.7531 -0.5893 13 6 3.5461 5.1963 -0.3375 14 6 2.5485 6.1416 -0.9558 15 1 1.6859 5.7520 -1.4759 16 6 2.7370 7.5039 -0.8575 17 7 1.8662 8.3289 -1.3966 18 14 4.2287 8.1778 0.0427 19 1 5.3520 8.3420 -0.9145 20 1 3.8923 9.4944 0.6416 21 1 4.6274 7.2329 1.1166 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 4.5658 0.8724 -3.1303 30 1 3.2616 0.4170 1.8921 31 1 4.7417 -0.0790 1.0186 32 1 4.7247 1.7929 3.0945 33 1 5.9604 1.7676 1.7959 34 1 3.3752 3.4190 1.9360 35 1 5.0299 3.9794 1.5363 36 1 3.0494 3.5721 -1.6628 37 1 2.1245 3.5896 -0.1420 38 1 3.6017 5.3772 0.7359 39 1 4.5266 5.3599 -0.7848 40 1 1.9990 9.2872 -1.3278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233430733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -120.122908 kcal Electronic energy + Delta-G solvation = -20290.556541 eV Core-core repulsion = 17296.870081 eV Total energy + Delta-G solvation = -2993.686459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.07344 -39.84626 -37.17957 -35.88589 -35.27856 -33.77885 -31.43914 -30.41222 -26.87493 -26.37034 -24.63204 -23.46098 -22.56626 -21.12251 -20.28159 -19.11720 -18.79362 -17.71603 -17.11271 -16.41468 -16.31654 -15.92432 -15.64500 -15.31678 -14.95514 -14.67997 -14.40864 -13.92932 -13.76612 -13.39958 -13.25639 -13.07645 -12.87450 -12.56242 -12.49248 -12.30912 -12.18630 -12.06595 -11.84281 -11.70103 -11.64236 -11.55989 -11.50479 -11.39963 -11.18395 -10.75096 -9.38403 -8.28349 -6.32257 1.16653 1.37865 1.38340 1.50440 2.17232 2.37238 2.92237 3.07465 3.43927 3.58379 3.81951 4.03186 4.04164 4.19944 4.36393 4.45808 4.47126 4.48897 4.52427 4.65563 4.74408 4.86065 4.88255 4.93621 4.97043 5.01468 5.11328 5.18197 5.21023 5.25937 5.31112 5.37799 5.48616 5.58898 5.64068 5.89393 6.04428 6.30721 6.75296 7.05275 7.32260 8.88273 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.006238 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.586503 B = 4487.889590 C = 4780.205993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.097 3.903 5 C 0.508 3.492 6 O -0.540 6.540 7 O -0.506 6.506 8 C -0.112 4.112 9 C -0.115 4.115 10 C 0.029 3.971 11 N -0.513 5.513 12 C 0.071 3.929 13 C -0.002 4.002 14 C -0.529 4.529 15 H 0.033 0.967 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.949 3.051 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.244 1.244 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.419 0.581 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -17.226 6.933 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.170 4.170 4 C 0.006 3.994 5 C 0.351 3.649 6 O -0.430 6.430 7 O -0.318 6.318 8 C -0.150 4.150 9 C -0.153 4.153 10 C -0.098 4.098 11 N -0.237 5.237 12 C -0.056 4.056 13 C -0.040 4.040 14 C -0.568 4.568 15 H 0.051 0.949 16 C -0.190 4.190 17 N -0.591 5.591 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.167 1.167 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.280 0.720 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.343 -17.085 6.926 18.940 hybrid contribution -0.278 0.547 -0.486 0.783 sum 4.064 -16.538 6.440 18.207 Atomic orbital electron populations 1.21752 0.94501 1.02414 1.02042 1.21567 0.96976 0.94645 1.02569 1.22207 0.92031 0.99125 1.03671 1.21753 0.95204 0.90837 0.91611 1.23359 0.72241 0.84776 0.84516 1.90646 1.48740 1.18117 1.85538 1.84678 1.77947 1.47623 1.21512 1.22549 1.01352 0.98465 0.92632 1.22537 0.99988 0.91964 1.00773 1.23315 1.00490 0.99073 0.86923 1.64801 1.42166 0.99853 1.16891 1.22109 0.92949 0.91721 0.98847 1.19497 0.95658 0.92294 0.96539 1.21380 1.08789 0.91580 1.35031 0.94883 1.25951 0.99561 0.97358 0.96094 1.70063 1.38381 1.03467 1.47202 0.85673 0.79246 0.77900 0.79920 1.19614 1.20975 1.16698 0.93422 0.91336 0.91971 0.93252 0.90097 0.89510 0.91785 0.72036 0.88129 0.89844 0.87964 0.90617 0.93058 0.90171 0.92206 0.94053 0.95601 0.96688 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.91 71.98 0.71 -2.18 16 2 C -0.12 -2.61 5.38 30.59 0.16 -2.45 16 3 C -0.13 -3.44 2.78 30.60 0.09 -3.35 16 4 C 0.10 2.69 0.60 2.93 0.00 2.69 16 5 C 0.51 14.85 6.18 71.23 0.44 15.29 16 6 O -0.54 -16.66 15.76 21.94 0.35 -16.31 16 7 O -0.51 -14.13 12.54 -51.34 -0.64 -14.77 16 8 C -0.11 -2.48 5.53 31.47 0.17 -2.31 16 9 C -0.11 -2.40 7.06 31.80 0.22 -2.17 16 10 C 0.03 0.82 5.09 86.65 0.44 1.26 16 11 N -0.51 -16.77 4.81 -838.29 -4.03 -20.80 16 12 C 0.07 2.82 3.82 86.30 0.33 3.15 16 13 C 0.00 -0.10 3.70 29.85 0.11 0.01 16 14 C -0.53 -30.47 9.66 25.60 0.25 -30.22 16 15 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 16 C 0.01 0.42 5.47 84.66 0.46 0.89 16 17 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 18 Si 0.95 44.27 27.47 68.60 1.88 46.15 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.20 6.84 -2.39 -0.02 1.19 16 26 H 0.08 1.55 6.57 -2.39 -0.02 1.53 16 27 H 0.09 2.19 7.70 -2.39 -0.02 2.17 16 28 H 0.06 1.93 6.67 -2.39 -0.02 1.91 16 29 H 0.42 7.51 9.10 -74.06 -0.67 6.83 16 30 H 0.10 1.82 6.45 -2.39 -0.02 1.80 16 31 H 0.08 1.94 6.78 -2.39 -0.02 1.92 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 35 H 0.08 2.37 7.67 -2.39 -0.02 2.36 16 36 H 0.06 2.55 7.60 -2.38 -0.02 2.53 16 37 H 0.04 1.61 5.69 -2.38 -0.01 1.60 16 38 H 0.03 1.16 5.85 -2.39 -0.01 1.15 16 39 H 0.01 0.71 7.57 -2.38 -0.02 0.69 16 40 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -69.35 309.97 1.55 -67.79 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.30 Total: 16.64 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 3.40 Total: -19.40 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -3.73 Total: -80.10 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.30 Total: -31.09 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -69.35 1.55 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233430733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.329 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds