Wall clock time and date at job start Mon Mar 30 2020 06:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81390 * 103.00170 * 2 1 4 4 H 1.09000 * 110.43630 * 56.08804 * 3 2 1 5 5 C 1.54897 * 110.48613 * 293.54785 * 3 2 1 6 6 C 1.54890 * 102.74684 * 203.38133 * 5 3 2 7 7 C 1.54266 * 104.19845 * 37.94144 * 6 5 3 8 8 H 1.08999 * 110.03261 * 95.72345 * 7 6 5 9 9 N 1.46901 * 110.02852 * 217.10774 * 7 6 5 10 10 C 1.46904 * 110.99967 * 272.30737 * 9 7 6 11 11 C 1.52998 * 109.47493 * 183.98657 * 10 9 7 12 12 C 1.50702 * 115.54687 * 65.48848 * 11 10 9 13 13 H 1.08009 * 120.00108 * 267.12613 * 12 11 10 14 14 C 1.37878 * 120.00242 * 87.12590 * 12 11 10 15 15 N 1.31510 * 120.00150 * 184.15779 * 14 12 11 16 16 Si 1.86798 * 119.99760 * 4.16106 * 14 12 11 17 17 H 1.48497 * 109.47537 * 93.98561 * 16 14 12 18 18 H 1.48503 * 109.47167 * 213.98951 * 16 14 12 19 19 H 1.48502 * 109.47056 * 333.98214 * 16 14 12 20 20 C 1.53000 * 117.50098 * 279.82261 * 11 10 9 21 21 C 1.52995 * 117.50074 * 211.16141 * 11 10 9 22 22 C 1.53877 * 106.59652 * 336.38833 * 7 6 5 23 23 H 1.08995 * 109.47224 * 60.00089 * 1 2 3 24 24 H 1.08998 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46852 * 300.00283 * 1 2 3 26 26 H 1.09005 * 110.75425 * 321.69327 * 5 3 2 27 27 H 1.08994 * 110.75902 * 84.87956 * 5 3 2 28 28 H 1.08998 * 110.48530 * 156.62310 * 6 5 3 29 29 H 1.09003 * 110.48617 * 279.12629 * 6 5 3 30 30 H 1.00899 * 110.99505 * 148.35924 * 9 7 6 31 31 H 1.09000 * 109.47096 * 303.99237 * 10 9 7 32 32 H 1.09000 * 109.46755 * 63.98747 * 10 9 7 33 33 H 0.96996 * 119.99796 * 180.02562 * 15 14 12 34 34 H 1.08999 * 117.49730 * 359.97438 * 20 11 10 35 35 H 1.09000 * 117.50165 * 145.01592 * 20 11 10 36 36 H 1.09005 * 117.49555 * 214.97825 * 21 11 10 37 37 H 1.08997 * 117.50024 * 359.97438 * 21 11 10 38 38 H 1.09001 * 110.03040 * 240.71379 * 22 7 6 39 39 H 1.08998 * 110.03084 * 119.28834 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 1 1.7525 2.2664 0.8477 5 6 1.7792 2.4260 -1.3302 6 6 2.6982 3.6698 -1.4183 7 6 4.0540 3.1780 -0.8708 8 1 4.7024 2.8779 -1.6940 9 7 4.6959 4.2418 -0.0871 10 6 5.5060 5.1141 -0.9479 11 6 6.2358 6.1461 -0.0858 12 6 7.2686 5.5893 0.8599 13 1 6.9944 5.3431 1.8751 14 6 8.5637 5.3941 0.4290 15 7 9.4449 4.8326 1.2277 16 14 9.0668 5.9273 -1.2891 17 1 9.6444 7.2942 -1.2340 18 1 10.0805 4.9827 -1.8236 19 1 7.8755 5.9286 -2.1757 20 6 5.4412 7.3692 0.3765 21 6 6.5125 7.5167 -0.7069 22 6 3.7513 1.9684 0.0310 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9556 1.7551 -2.1709 27 1 0.7305 2.7195 -1.2856 28 1 2.8004 3.9960 -2.4533 29 1 2.3060 4.4783 -0.8014 30 1 5.2517 3.8547 0.6608 31 1 6.2355 4.5130 -1.4906 32 1 4.8576 5.6273 -1.6580 33 1 10.3560 4.6956 0.9247 34 1 4.3987 7.4388 0.0661 35 1 5.6658 7.7714 1.3644 36 1 7.4415 8.0158 -0.4312 37 1 6.1750 7.6830 -1.7299 38 1 4.0808 2.1708 1.0501 39 1 4.2525 1.0806 -0.3545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235072393.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:40 Heat of formation + Delta-G solvation = 12.933146 kcal Electronic energy + Delta-G solvation = -17134.151047 eV Core-core repulsion = 14588.987202 eV Total energy + Delta-G solvation = -2545.163845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.48016 -36.88426 -33.18831 -32.07279 -29.26407 -28.71051 -27.49159 -25.61465 -23.72635 -21.55787 -20.93680 -19.74138 -18.85243 -16.73458 -16.18411 -15.58404 -15.04979 -14.90685 -14.59209 -14.01169 -13.67579 -13.50668 -13.45434 -13.16236 -12.67236 -12.36680 -12.07097 -11.85115 -11.29515 -11.12751 -11.08699 -11.03577 -10.90504 -10.67430 -10.49307 -10.35288 -9.99571 -9.88824 -9.41765 -8.99228 -8.58828 -8.39779 -7.76837 -7.68379 -6.11291 -4.14098 1.62331 2.49344 3.28926 3.38810 3.44936 4.42999 4.48114 4.59670 4.63108 4.95612 4.96795 5.08787 5.19747 5.27630 5.40521 5.48597 5.50831 5.58036 5.60655 5.78129 5.87083 5.88875 6.06361 6.16596 6.19296 6.23717 6.28494 6.39281 6.49051 6.56795 6.59921 6.82604 7.13537 7.22287 7.77715 7.81973 8.16513 8.52486 8.93171 9.53168 11.00253 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.031858 B = 0.004821 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.677133 B = 5806.381892 C = 6175.892755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.269 6.269 3 C -0.049 4.049 4 H 0.092 0.908 5 C -0.117 4.117 6 C -0.110 4.110 7 C 0.085 3.915 8 H 0.044 0.956 9 N -0.673 5.673 10 C 0.100 3.900 11 C 0.005 3.995 12 C -0.488 4.488 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.898 5.898 16 Si 0.879 3.121 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.169 4.169 21 C -0.205 4.205 22 C -0.101 4.101 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.355 0.645 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.969 -5.695 -5.369 17.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.178 4.178 4 H 0.111 0.889 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.027 4.027 8 H 0.062 0.938 9 N -0.306 5.306 10 C -0.029 4.029 11 C 0.004 3.996 12 C -0.525 4.525 13 H 0.096 0.904 14 C -0.126 4.126 15 N -0.535 5.535 16 Si 0.707 3.293 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.180 1.180 20 C -0.207 4.207 21 C -0.243 4.243 22 C -0.141 4.141 23 H 0.094 0.906 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.176 0.824 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.652 -6.274 -5.329 17.685 hybrid contribution 0.389 0.764 -1.076 1.376 sum -15.263 -5.511 -6.405 17.446 Atomic orbital electron populations 1.23331 0.94806 1.06044 1.04788 1.86893 1.06859 1.12423 1.97906 1.24016 1.00481 0.91950 1.01315 0.88929 1.22846 0.99265 0.97634 0.95935 1.22426 0.94592 0.97133 1.00779 1.22106 0.95520 0.90254 0.94808 0.93763 1.60652 1.37098 1.20000 1.12850 1.21632 0.92993 0.94500 0.93765 1.19380 0.97449 0.85494 0.97304 1.20313 0.91859 1.42444 0.97931 0.90393 1.24999 0.96431 0.94079 0.97053 1.69905 1.04204 1.42825 1.36601 0.86853 0.78529 0.78161 0.85770 1.20685 1.22378 1.18042 1.22710 0.94409 1.05667 0.97870 1.22967 1.00351 1.04732 0.96249 1.22168 0.91978 0.98212 1.01701 0.90622 0.88500 0.90668 0.90563 0.91730 0.92057 0.90189 0.82411 0.95780 0.93716 0.92649 0.90931 0.90011 0.89828 0.91235 0.89788 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.63 101.05 1.07 0.07 16 2 S -0.27 -3.16 21.65 -107.50 -2.33 -5.49 16 3 C -0.05 -0.58 3.38 -25.07 -0.08 -0.67 16 4 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 5 C -0.12 -1.28 6.21 -24.73 -0.15 -1.43 16 6 C -0.11 -1.41 6.48 -25.07 -0.16 -1.58 16 7 C 0.08 1.28 3.25 -66.59 -0.22 1.07 16 8 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 9 N -0.67 -12.26 6.29 -105.54 -0.66 -12.92 16 10 C 0.10 2.05 5.10 -3.82 -0.02 2.03 16 11 C 0.00 0.11 1.00 -155.66 -0.16 -0.04 16 12 C -0.49 -13.16 8.77 -34.44 -0.30 -13.46 16 13 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 16 Si 0.88 21.55 24.87 -169.99 -4.23 17.32 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.26 -5.96 5.82 56.52 0.33 -5.63 16 20 C -0.17 -3.49 9.96 -26.69 -0.27 -3.75 16 21 C -0.21 -4.39 7.23 -26.70 -0.19 -4.58 16 22 C -0.10 -1.40 6.07 -25.61 -0.16 -1.55 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 30 H 0.35 7.06 7.35 -39.29 -0.29 6.77 16 31 H 0.02 0.53 7.16 -51.93 -0.37 0.15 16 32 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.08 1.88 6.92 -51.93 -0.36 1.52 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.22 7.47 -51.93 -0.39 0.83 16 39 H 0.07 1.01 7.79 -51.93 -0.40 0.61 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -28.33 318.63 -9.28 -37.62 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.91 Total: 6.63 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -0.73 Total: -21.86 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.11 Total: -39.01 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.23 Total: 17.32 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.33 Total: -5.49 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.33 -9.28 -37.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235072393.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.549 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds