Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81404 * 102.99924 * 2 1 4 4 H 1.08996 * 110.43601 * 303.91652 * 3 2 1 5 5 C 1.54891 * 110.48133 * 66.45643 * 3 2 1 6 6 C 1.54888 * 102.74630 * 156.62309 * 5 3 2 7 7 C 1.54261 * 104.19611 * 322.05197 * 6 5 3 8 8 H 1.09005 * 110.03759 * 264.28051 * 7 6 5 9 9 N 1.46896 * 110.03531 * 142.89763 * 7 6 5 10 10 C 1.46902 * 111.00441 * 86.45532 * 9 7 6 11 11 C 1.52995 * 109.47583 * 175.94242 * 10 9 7 12 12 C 1.50702 * 115.55067 * 37.38651 * 11 10 9 13 13 H 1.08001 * 120.00482 * 264.54732 * 12 11 10 14 14 C 1.37876 * 119.99844 * 84.54093 * 12 11 10 15 15 N 1.31510 * 120.00279 * 350.24426 * 14 12 11 16 16 Si 1.86805 * 119.99962 * 170.23783 * 14 12 11 17 17 H 1.48500 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47000 * 120.00199 * 16 14 12 19 19 H 1.48496 * 109.47231 * 240.00431 * 16 14 12 20 20 C 1.52999 * 117.49761 * 251.68051 * 11 10 9 21 21 C 1.52991 * 117.50045 * 183.05746 * 11 10 9 22 22 C 1.53879 * 106.59876 * 23.61460 * 7 6 5 23 23 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47205 * 299.99644 * 1 2 3 25 25 H 1.09003 * 109.47069 * 60.00069 * 1 2 3 26 26 H 1.08996 * 110.76064 * 38.30194 * 5 3 2 27 27 H 1.09009 * 110.91380 * 275.00623 * 5 3 2 28 28 H 1.09006 * 110.48402 * 203.37824 * 6 5 3 29 29 H 1.08996 * 110.60585 * 80.79038 * 6 5 3 30 30 H 1.00902 * 110.99718 * 322.49985 * 9 7 6 31 31 H 1.09004 * 109.47015 * 55.93857 * 10 9 7 32 32 H 1.09003 * 109.46801 * 295.94431 * 10 9 7 33 33 H 0.97003 * 120.00541 * 185.01427 * 15 14 12 34 34 H 1.08997 * 117.49964 * 359.97438 * 20 11 10 35 35 H 1.09001 * 117.49508 * 145.02445 * 20 11 10 36 36 H 1.09007 * 117.50306 * 214.97796 * 21 11 10 37 37 H 1.08999 * 117.49999 * 359.97438 * 21 11 10 38 38 H 1.08993 * 110.03263 * 119.28222 * 22 7 6 39 39 H 1.08997 * 110.03158 * 240.71537 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7523 2.2666 -0.8476 5 6 1.7792 2.4260 1.3302 6 6 2.6980 3.6698 1.4183 7 6 4.0538 3.1782 0.8709 8 1 4.7023 2.8781 1.6940 9 7 4.6957 4.2420 0.0872 10 6 5.4822 5.1316 0.9521 11 6 6.2149 6.1628 0.0915 12 6 5.4500 6.6749 -1.1017 13 1 5.5980 6.2245 -2.0720 14 6 4.5611 7.7186 -0.9545 15 7 4.2356 8.1405 0.2478 16 14 3.8193 8.5334 -2.4629 17 1 4.3435 7.8778 -3.6879 18 1 2.3411 8.3966 -2.4228 19 1 4.1831 9.9730 -2.4772 20 6 7.7310 6.0144 -0.0513 21 6 7.1499 7.1416 0.8045 22 6 3.7512 1.9686 -0.0310 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9555 1.7551 2.1709 27 1 0.7310 2.7223 1.2877 28 1 2.8002 3.9960 2.4534 29 1 2.3082 4.4792 0.8010 30 1 4.0130 4.7632 -0.4423 31 1 6.2090 4.5439 1.5128 32 1 4.8167 5.6448 1.6463 33 1 3.5563 8.8248 0.3543 34 1 8.2064 5.1824 0.4682 35 1 8.1754 6.2872 -1.0084 36 1 7.2121 8.1560 0.4104 37 1 7.2426 7.0513 1.8868 38 1 4.0806 2.1711 -1.0500 39 1 4.2524 1.0808 0.3545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235108613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = 9.487551 kcal Electronic energy + Delta-G solvation = -17234.316356 eV Core-core repulsion = 14689.003099 eV Total energy + Delta-G solvation = -2545.313257 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.34083 -36.50737 -32.91493 -31.92620 -29.18569 -28.50558 -27.26398 -25.38206 -23.53714 -21.01089 -20.77710 -19.78246 -18.91562 -16.61079 -15.91976 -15.55469 -14.96053 -14.58010 -14.11138 -13.82656 -13.62666 -13.50999 -13.28009 -13.03508 -12.51885 -11.87186 -11.84397 -11.66270 -11.20607 -11.00892 -10.97416 -10.87881 -10.74542 -10.67841 -10.42627 -10.30327 -10.10205 -9.81911 -9.38768 -8.75262 -8.44268 -8.05553 -7.69642 -7.30081 -6.03003 -4.05921 1.70516 2.56961 3.26007 3.36000 3.40816 4.39808 4.59530 4.73344 4.99443 5.02455 5.03693 5.25361 5.31614 5.49285 5.53295 5.57729 5.64970 5.69213 5.75035 5.90229 6.00803 6.18047 6.23988 6.33781 6.43329 6.49856 6.54165 6.62760 6.80227 6.85055 7.02146 7.15489 7.47107 7.52765 7.89656 8.14974 8.45791 8.56916 8.97137 9.57582 11.04921 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.005423 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.611298 B = 5162.086071 C = 5790.554587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.270 6.270 3 C -0.054 4.054 4 H 0.090 0.910 5 C -0.115 4.115 6 C -0.150 4.150 7 C 0.087 3.913 8 H 0.072 0.928 9 N -0.667 5.667 10 C 0.108 3.892 11 C 0.051 3.949 12 C -0.482 4.482 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.884 3.116 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.207 4.207 21 C -0.167 4.167 22 C -0.090 4.090 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.355 0.645 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.258 0.742 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 -11.563 2.242 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.042 6.042 3 C -0.183 4.183 4 H 0.108 0.892 5 C -0.155 4.155 6 C -0.190 4.190 7 C -0.025 4.025 8 H 0.091 0.909 9 N -0.300 5.300 10 C -0.021 4.021 11 C 0.051 3.949 12 C -0.520 4.520 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.518 5.518 16 Si 0.712 3.288 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.245 4.245 21 C -0.205 4.205 22 C -0.129 4.129 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.177 0.823 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.079 -12.668 2.118 13.811 hybrid contribution -2.103 2.136 -0.242 3.007 sum -7.181 -10.531 1.876 12.884 Atomic orbital electron populations 1.23330 0.94936 1.05939 1.04809 1.86784 1.06766 1.12717 1.97913 1.24116 1.01290 0.91750 1.01111 0.89206 1.22789 0.99150 0.97533 0.95991 1.23169 0.96770 0.97148 1.01958 1.22137 0.93063 0.92751 0.94582 0.90934 1.60548 1.28898 1.15143 1.25368 1.21367 0.95072 0.92186 0.93495 1.18807 0.86302 0.93860 0.95965 1.20432 1.23312 1.14841 0.93402 0.91970 1.24987 0.96630 0.96339 0.95397 1.70008 1.30657 1.30219 1.20936 0.86669 0.78620 0.79646 0.83899 1.19628 1.21281 1.21099 1.22991 1.00612 1.00353 1.00513 1.22543 1.07537 0.95085 0.95320 1.22017 0.90542 0.97917 1.02440 0.88569 0.90637 0.90717 0.90537 0.92024 0.91659 0.90872 0.82290 0.94617 0.95321 0.93252 0.91861 0.90763 0.90414 0.92195 0.89507 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.62 101.05 1.07 -0.05 16 2 S -0.27 -3.34 21.65 -107.50 -2.33 -5.66 16 3 C -0.05 -0.70 3.38 -25.07 -0.08 -0.79 16 4 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.11 -1.44 6.20 -24.74 -0.15 -1.59 16 6 C -0.15 -2.25 6.43 -25.08 -0.16 -2.41 16 7 C 0.09 1.41 3.23 -66.60 -0.21 1.19 16 8 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 9 N -0.67 -13.22 5.92 -105.54 -0.62 -13.84 16 10 C 0.11 2.36 5.68 -3.83 -0.02 2.34 16 11 C 0.05 1.24 1.75 -155.67 -0.27 0.97 16 12 C -0.48 -12.58 7.37 -34.44 -0.25 -12.84 16 13 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 14 C 0.07 1.81 5.37 -17.82 -0.10 1.72 16 15 N -0.88 -24.04 13.05 55.43 0.72 -23.32 16 16 Si 0.88 20.57 29.55 -169.99 -5.02 15.55 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C -0.21 -4.60 9.88 -26.73 -0.26 -4.87 16 21 C -0.17 -3.92 9.59 -26.74 -0.26 -4.18 16 22 C -0.09 -1.30 6.18 -25.61 -0.16 -1.46 16 23 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.23 7.58 -51.93 -0.39 0.83 16 30 H 0.36 7.64 7.04 -39.29 -0.28 7.36 16 31 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 34 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 35 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 1.95 8.14 -51.92 -0.42 1.52 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.35 7.92 -51.93 -0.41 0.94 16 39 H 0.07 0.98 7.79 -51.93 -0.40 0.57 16 LS Contribution 326.73 15.07 4.92 4.92 Total: -1.00 -26.46 326.73 -10.09 -36.56 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.90 Total: 7.75 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -0.86 Total: -21.96 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.10 Total: -37.15 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.33 Total: -5.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.46 -10.09 -36.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235108613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.046 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds