Wall clock time and date at job start Mon Mar 30 2020 06:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81404 * 102.99924 * 2 1 4 4 H 1.08996 * 110.43601 * 303.91652 * 3 2 1 5 5 C 1.54891 * 110.48133 * 66.45643 * 3 2 1 6 6 C 1.54888 * 102.74630 * 156.62309 * 5 3 2 7 7 C 1.54261 * 104.19611 * 322.05197 * 6 5 3 8 8 H 1.09005 * 110.03759 * 264.28051 * 7 6 5 9 9 N 1.46896 * 110.03531 * 142.89763 * 7 6 5 10 10 C 1.46902 * 111.00441 * 86.45532 * 9 7 6 11 11 C 1.52995 * 109.47583 * 175.94242 * 10 9 7 12 12 C 1.50702 * 115.55067 * 37.38651 * 11 10 9 13 13 H 1.08001 * 120.00482 * 264.54732 * 12 11 10 14 14 C 1.37876 * 119.99844 * 84.54093 * 12 11 10 15 15 N 1.31510 * 120.00279 * 350.24426 * 14 12 11 16 16 Si 1.86805 * 119.99962 * 170.23783 * 14 12 11 17 17 H 1.48500 * 109.47157 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47000 * 120.00199 * 16 14 12 19 19 H 1.48496 * 109.47231 * 240.00431 * 16 14 12 20 20 C 1.52999 * 117.49761 * 251.68051 * 11 10 9 21 21 C 1.52991 * 117.50045 * 183.05746 * 11 10 9 22 22 C 1.53879 * 106.59876 * 23.61460 * 7 6 5 23 23 H 1.09003 * 109.47109 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47205 * 299.99644 * 1 2 3 25 25 H 1.09003 * 109.47069 * 60.00069 * 1 2 3 26 26 H 1.08996 * 110.76064 * 38.30194 * 5 3 2 27 27 H 1.09009 * 110.91380 * 275.00623 * 5 3 2 28 28 H 1.09006 * 110.48402 * 203.37824 * 6 5 3 29 29 H 1.08996 * 110.60585 * 80.79038 * 6 5 3 30 30 H 1.00902 * 110.99718 * 322.49985 * 9 7 6 31 31 H 1.09004 * 109.47015 * 55.93857 * 10 9 7 32 32 H 1.09003 * 109.46801 * 295.94431 * 10 9 7 33 33 H 0.97003 * 120.00541 * 185.01427 * 15 14 12 34 34 H 1.08997 * 117.49964 * 359.97438 * 20 11 10 35 35 H 1.09001 * 117.49508 * 145.02445 * 20 11 10 36 36 H 1.09007 * 117.50306 * 214.97796 * 21 11 10 37 37 H 1.08999 * 117.49999 * 359.97438 * 21 11 10 38 38 H 1.08993 * 110.03263 * 119.28222 * 22 7 6 39 39 H 1.08997 * 110.03158 * 240.71537 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7523 2.2666 -0.8476 5 6 1.7792 2.4260 1.3302 6 6 2.6980 3.6698 1.4183 7 6 4.0538 3.1782 0.8709 8 1 4.7023 2.8781 1.6940 9 7 4.6957 4.2420 0.0872 10 6 5.4822 5.1316 0.9521 11 6 6.2149 6.1628 0.0915 12 6 5.4500 6.6749 -1.1017 13 1 5.5980 6.2245 -2.0720 14 6 4.5611 7.7186 -0.9545 15 7 4.2356 8.1405 0.2478 16 14 3.8193 8.5334 -2.4629 17 1 4.3435 7.8778 -3.6879 18 1 2.3411 8.3966 -2.4228 19 1 4.1831 9.9730 -2.4772 20 6 7.7310 6.0144 -0.0513 21 6 7.1499 7.1416 0.8045 22 6 3.7512 1.9686 -0.0310 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9555 1.7551 2.1709 27 1 0.7310 2.7223 1.2877 28 1 2.8002 3.9960 2.4534 29 1 2.3082 4.4792 0.8010 30 1 4.0130 4.7632 -0.4423 31 1 6.2090 4.5439 1.5128 32 1 4.8167 5.6448 1.6463 33 1 3.5563 8.8248 0.3543 34 1 8.2064 5.1824 0.4682 35 1 8.1754 6.2872 -1.0084 36 1 7.2121 8.1560 0.4104 37 1 7.2426 7.0513 1.8868 38 1 4.0806 2.1711 -1.0500 39 1 4.2524 1.0808 0.3545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235108613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:41 Heat of formation + Delta-G solvation = -3.512061 kcal Electronic energy + Delta-G solvation = -17234.880061 eV Core-core repulsion = 14689.003099 eV Total energy + Delta-G solvation = -2545.876963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68125 -38.23810 -34.40117 -33.94421 -30.04724 -29.60462 -28.62414 -27.34969 -25.13077 -22.85538 -21.88445 -21.25821 -20.62282 -18.01129 -17.49259 -16.78893 -16.56764 -16.25851 -15.53636 -15.30220 -15.04502 -14.59238 -14.29862 -14.16628 -14.02285 -13.47730 -13.24945 -12.97966 -12.86593 -12.85071 -12.63970 -12.29636 -12.12832 -12.02481 -11.94015 -11.83657 -11.57151 -11.22798 -10.77409 -10.69920 -10.39138 -9.90501 -8.91772 -8.64758 -8.05414 -6.12748 0.78531 1.39470 1.45219 1.54582 1.67634 2.45147 3.21462 3.36202 3.54890 3.60479 3.76772 4.17779 4.32717 4.34175 4.38305 4.42058 4.43792 4.50664 4.58693 4.64720 4.68640 4.80650 4.86097 4.91537 4.98859 5.00159 5.04655 5.12874 5.22600 5.27535 5.30498 5.36287 5.65778 5.66731 5.83383 6.44651 6.63680 6.79666 6.94532 7.52866 9.02013 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.005423 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.611298 B = 5162.086071 C = 5790.554587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.296 6.296 3 C -0.048 4.048 4 H 0.086 0.914 5 C -0.102 4.102 6 C -0.145 4.145 7 C 0.085 3.915 8 H 0.075 0.925 9 N -0.671 5.671 10 C 0.121 3.879 11 C 0.025 3.975 12 C -0.487 4.487 13 H 0.050 0.950 14 C 0.031 3.969 15 N -0.906 5.906 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.288 1.288 20 C -0.188 4.188 21 C -0.171 4.171 22 C -0.083 4.083 23 H 0.112 0.888 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.343 0.657 31 H 0.048 0.952 32 H 0.004 0.996 33 H 0.257 0.743 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 -12.889 2.227 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.068 6.068 3 C -0.177 4.177 4 H 0.104 0.896 5 C -0.141 4.141 6 C -0.186 4.186 7 C -0.026 4.026 8 H 0.093 0.907 9 N -0.302 5.302 10 C -0.008 4.008 11 C 0.024 3.976 12 C -0.526 4.526 13 H 0.068 0.932 14 C -0.169 4.169 15 N -0.544 5.544 16 Si 0.766 3.234 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.214 1.214 20 C -0.225 4.225 21 C -0.209 4.209 22 C -0.122 4.122 23 H 0.131 0.869 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.913 -14.011 2.101 15.352 hybrid contribution -1.835 2.502 -0.241 3.112 sum -7.749 -11.509 1.861 13.999 Atomic orbital electron populations 1.23417 0.91791 1.07316 1.05613 1.86871 1.10233 1.11726 1.97985 1.23965 0.99995 0.92542 1.01210 0.89577 1.22720 0.99303 0.96114 0.96004 1.23044 0.96680 0.97681 1.01224 1.22228 0.93505 0.92178 0.94721 0.90663 1.60543 1.29049 1.14925 1.25634 1.21157 0.94852 0.91932 0.92887 1.19010 0.87476 0.94942 0.96134 1.20540 1.23518 1.14937 0.93556 0.93216 1.25524 0.97127 0.96763 0.97459 1.70099 1.31249 1.30699 1.22395 0.85799 0.78071 0.78338 0.81178 1.19468 1.20748 1.21398 1.22994 0.99188 1.00114 1.00240 1.22456 1.08197 0.94240 0.96030 1.21886 0.91983 0.97163 1.01146 0.86911 0.89661 0.90094 0.89610 0.90554 0.91788 0.92975 0.83673 0.93316 0.97781 0.93373 0.89510 0.90923 0.92610 0.91089 0.90854 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 10.62 113.37 1.20 -0.55 16 2 S -0.30 -6.72 21.65 -56.49 -1.22 -7.94 16 3 C -0.05 -1.19 3.38 31.67 0.11 -1.08 16 4 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 5 C -0.10 -2.36 6.20 31.89 0.20 -2.16 16 6 C -0.15 -4.29 6.43 31.67 0.20 -4.09 16 7 C 0.09 2.71 3.23 45.64 0.15 2.86 16 8 H 0.08 2.35 7.77 -2.38 -0.02 2.33 16 9 N -0.67 -26.62 5.92 -487.83 -2.89 -29.50 16 10 C 0.12 5.30 5.68 86.30 0.49 5.79 16 11 C 0.03 1.21 1.75 -52.93 -0.09 1.11 16 12 C -0.49 -25.66 7.37 25.60 0.19 -25.47 16 13 H 0.05 2.69 7.83 -2.91 -0.02 2.67 16 14 C 0.03 1.66 5.37 84.65 0.45 2.11 16 15 N -0.91 -50.03 13.05 21.45 0.28 -49.75 16 16 Si 0.94 42.49 29.55 68.60 2.03 44.52 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 C -0.19 -8.15 9.88 30.59 0.30 -7.85 16 21 C -0.17 -8.04 9.59 30.59 0.29 -7.74 16 22 C -0.08 -2.32 6.18 31.32 0.19 -2.13 16 23 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.87 8.05 -2.39 -0.02 1.85 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.05 1.76 7.58 -2.39 -0.02 1.74 16 30 H 0.34 15.03 7.04 -89.69 -0.63 14.40 16 31 H 0.05 1.97 7.75 -2.39 -0.02 1.95 16 32 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 34 H 0.09 3.33 8.07 -2.39 -0.02 3.31 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.06 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 39 H 0.07 2.02 7.79 -2.39 -0.02 2.00 16 Total: -1.00 -55.67 326.73 2.26 -53.41 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.37 Total: 28.44 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 3.69 Total: -39.18 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.61 Total: -79.25 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -1.22 Total: -7.94 kcal Total: -55.67 2.26 -53.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235108613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.902 kcal (2) G-P(sol) polarization free energy of solvation -55.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds