Wall clock time and date at job start Mon Mar 30 2020 06:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00316 * 2 1 4 4 H 1.09002 * 110.01658 * 54.93468 * 3 2 1 5 5 C 1.54269 * 110.02905 * 293.54683 * 3 2 1 6 6 C 1.54896 * 104.19303 * 217.10269 * 5 3 2 7 7 C 1.54896 * 102.74760 * 37.94549 * 6 5 3 8 8 C 1.54213 * 110.02546 * 176.33631 * 3 2 1 9 9 H 1.09002 * 110.14293 * 0.03616 * 8 3 2 10 10 N 1.46895 * 110.08917 * 238.49476 * 8 3 2 11 11 C 1.46903 * 111.00218 * 156.55454 * 10 8 3 12 12 C 1.52998 * 109.47422 * 185.35233 * 11 10 8 13 13 C 1.50700 * 115.55010 * 65.04975 * 12 11 10 14 14 H 1.08001 * 120.00375 * 265.44011 * 13 12 11 15 15 C 1.37876 * 120.00148 * 85.43797 * 13 12 11 16 16 N 1.31512 * 119.99894 * 353.59510 * 15 13 12 17 17 Si 1.86807 * 120.00114 * 173.59050 * 15 13 12 18 18 H 1.48499 * 109.46718 * 90.00656 * 17 15 13 19 19 H 1.48503 * 109.47073 * 210.00218 * 17 15 13 20 20 H 1.48500 * 109.46951 * 330.00271 * 17 15 13 21 21 C 1.52994 * 117.49730 * 279.38194 * 12 11 10 22 22 C 1.52998 * 117.49950 * 210.71928 * 12 11 10 23 23 H 1.09002 * 109.46851 * 59.99768 * 1 2 3 24 24 H 1.08999 * 109.47748 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47285 * 300.00370 * 1 2 3 26 26 H 1.08997 * 110.49023 * 98.42594 * 5 3 2 27 27 H 1.08999 * 110.59783 * 335.83368 * 5 3 2 28 28 H 1.08994 * 110.75537 * 279.62702 * 6 5 3 29 29 H 1.08996 * 110.75357 * 156.25148 * 6 5 3 30 30 H 1.08996 * 110.48943 * 80.73234 * 7 6 5 31 31 H 1.08995 * 110.48570 * 203.24625 * 7 6 5 32 32 H 1.00898 * 111.00647 * 280.51065 * 10 8 3 33 33 H 1.09005 * 109.47287 * 305.35534 * 11 10 8 34 34 H 1.09004 * 109.47213 * 65.34980 * 11 10 8 35 35 H 0.97002 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08996 * 117.50542 * 359.97438 * 21 12 11 37 37 H 1.09006 * 117.50054 * 145.01767 * 21 12 11 38 38 H 1.09002 * 117.49637 * 214.97575 * 22 12 11 39 39 H 1.09000 * 117.49781 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7769 2.4126 -1.3287 6 6 2.8892 3.4440 -1.6417 7 6 4.1744 2.7098 -1.1851 8 6 3.7498 1.9567 0.0926 9 1 4.2461 0.9872 0.1369 10 7 4.0888 2.7509 1.2809 11 6 5.4701 2.4936 1.7098 12 6 5.7430 3.2326 3.0213 13 6 4.9425 2.7653 4.2095 14 1 4.0209 3.2647 4.4699 15 6 5.3864 1.7003 4.9641 16 7 6.4385 1.0129 4.5764 17 14 4.4938 1.2338 6.5374 18 1 3.4266 0.2487 6.2274 19 1 5.4580 0.6341 7.4945 20 1 3.8872 2.4475 7.1408 21 6 6.0759 4.7235 2.9359 22 6 7.1731 3.7122 3.2775 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.8162 2.9128 -1.2069 27 1 1.7184 1.6633 -2.1181 28 1 2.7414 4.3580 -1.0665 29 1 2.9265 3.6599 -2.7094 30 1 4.5046 2.0072 -1.9502 31 1 4.9641 3.4268 -0.9606 32 1 3.9396 3.7346 1.1131 33 1 5.6105 1.4231 1.8599 34 1 6.1602 2.8465 0.9434 35 1 6.7510 0.2638 5.1076 36 1 6.1009 5.1778 1.9455 37 1 5.7162 5.3663 3.7394 38 1 7.5347 3.6902 4.3055 39 1 7.9194 3.5016 2.5115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235272318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:42 Heat of formation + Delta-G solvation = 12.828615 kcal Electronic energy + Delta-G solvation = -17376.761107 eV Core-core repulsion = 14831.592730 eV Total energy + Delta-G solvation = -2545.168378 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.51634 -36.51518 -32.92290 -31.75000 -29.25525 -28.28955 -27.36933 -25.41266 -23.75893 -21.05862 -20.68304 -19.83033 -18.92373 -16.70289 -15.90475 -15.49245 -14.98782 -14.49813 -14.08243 -13.89247 -13.71537 -13.36231 -13.08316 -12.99444 -12.86230 -12.02279 -11.67813 -11.59691 -11.08760 -11.01921 -10.92853 -10.86401 -10.79351 -10.59577 -10.53803 -10.38331 -10.12036 -9.61568 -9.38734 -8.74188 -8.30501 -8.01393 -7.53749 -7.40241 -5.89160 -3.90312 1.90551 2.79009 3.39774 3.45968 3.48904 4.51890 4.55601 4.60407 4.98797 5.09865 5.18183 5.22115 5.41254 5.48841 5.52215 5.53890 5.65571 5.68419 5.75077 5.79576 5.86117 5.95215 6.13934 6.23187 6.30330 6.33991 6.43108 6.55301 6.67545 6.77518 6.94494 7.16380 7.51720 7.64308 7.98677 8.03798 8.19880 8.61782 9.08120 9.72737 11.20839 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.006980 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.134490 B = 4010.453950 C = 5076.273231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.257 6.257 3 C -0.044 4.044 4 H 0.101 0.899 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.153 4.153 8 C 0.108 3.892 9 H 0.084 0.916 10 N -0.658 5.658 11 C 0.110 3.890 12 C 0.053 3.947 13 C -0.469 4.469 14 H 0.058 0.942 15 C 0.068 3.932 16 N -0.885 5.885 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.216 4.216 22 C -0.158 4.158 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.331 0.669 33 H 0.077 0.923 34 H -0.005 1.005 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 2.135 -12.220 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.029 6.029 3 C -0.174 4.174 4 H 0.120 0.880 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.193 4.193 8 C -0.004 4.004 9 H 0.102 0.898 10 N -0.287 5.287 11 C -0.019 4.019 12 C 0.053 3.947 13 C -0.507 4.507 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.523 5.523 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.254 4.254 22 C -0.196 4.196 23 H 0.090 0.910 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.013 0.987 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.694 0.599 -11.670 13.991 hybrid contribution -0.731 1.112 0.234 1.351 sum -8.425 1.710 -11.437 14.308 Atomic orbital electron populations 1.23331 0.95467 1.05869 1.04533 1.86931 1.06067 1.12154 1.97773 1.23963 1.00374 0.92552 1.00471 0.88044 1.22802 0.98463 0.98501 0.96278 1.22436 0.94655 0.97955 1.00627 1.23113 0.97628 0.99671 0.98863 1.21911 0.91595 0.98133 0.88808 0.89783 1.60276 1.26771 1.10421 1.31226 1.21574 0.84761 1.01608 0.93946 1.18819 0.93919 0.88396 0.93600 1.20275 1.06944 1.14592 1.08933 0.92367 1.24920 0.95000 0.95954 0.97475 1.70003 1.24731 1.19389 1.38146 0.86687 0.79519 0.78607 0.83705 1.20698 1.21496 1.20097 1.22992 1.07824 0.95281 0.99288 1.22513 0.92710 1.04168 1.00246 0.91012 0.88649 0.90629 0.91757 0.90633 0.91329 0.91659 0.91429 0.91389 0.85144 0.90507 0.98732 0.93353 0.92280 0.90580 0.90084 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 10.61 101.05 1.07 -0.30 16 2 S -0.26 -3.89 21.35 -107.50 -2.30 -6.18 16 3 C -0.04 -0.64 3.22 -25.43 -0.08 -0.73 16 4 H 0.10 1.62 7.93 -51.93 -0.41 1.21 16 5 C -0.12 -1.39 6.20 -25.07 -0.16 -1.54 16 6 C -0.12 -1.32 6.91 -24.73 -0.17 -1.49 16 7 C -0.15 -2.04 6.22 -25.06 -0.16 -2.20 16 8 C 0.11 1.76 2.92 -66.42 -0.19 1.57 16 9 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 10 N -0.66 -12.65 5.99 -105.35 -0.63 -13.28 16 11 C 0.11 2.44 5.34 -3.82 -0.02 2.42 16 12 C 0.05 1.31 1.55 -155.67 -0.24 1.06 16 13 C -0.47 -12.91 8.74 -34.44 -0.30 -13.21 16 14 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 15 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 16 N -0.88 -25.52 12.92 55.43 0.72 -24.80 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C -0.22 -4.69 9.96 -26.69 -0.27 -4.96 16 22 C -0.16 -3.75 9.41 -26.69 -0.25 -4.00 16 23 H 0.07 0.68 8.12 -51.92 -0.42 0.26 16 24 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 25 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 32 H 0.33 5.91 8.52 -39.29 -0.33 5.58 16 33 H 0.08 1.96 7.94 -51.93 -0.41 1.55 16 34 H -0.01 -0.11 7.80 -51.93 -0.41 -0.52 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -28.59 328.16 -10.09 -38.68 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.94 Total: 5.41 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -0.86 Total: -21.56 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.08 Total: -38.08 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -3.89 SS G_CDS: -2.30 Total: -6.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.59 -10.09 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235272318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.507 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds