Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81399 * 103.00316 * 2 1 4 4 H 1.09002 * 110.01658 * 54.93468 * 3 2 1 5 5 C 1.54269 * 110.02905 * 293.54683 * 3 2 1 6 6 C 1.54896 * 104.19303 * 217.10269 * 5 3 2 7 7 C 1.54896 * 102.74760 * 37.94549 * 6 5 3 8 8 C 1.54213 * 110.02546 * 176.33631 * 3 2 1 9 9 H 1.09002 * 110.14293 * 0.03616 * 8 3 2 10 10 N 1.46895 * 110.08917 * 238.49476 * 8 3 2 11 11 C 1.46903 * 111.00218 * 156.55454 * 10 8 3 12 12 C 1.52998 * 109.47422 * 185.35233 * 11 10 8 13 13 C 1.50700 * 115.55010 * 65.04975 * 12 11 10 14 14 H 1.08001 * 120.00375 * 265.44011 * 13 12 11 15 15 C 1.37876 * 120.00148 * 85.43797 * 13 12 11 16 16 N 1.31512 * 119.99894 * 353.59510 * 15 13 12 17 17 Si 1.86807 * 120.00114 * 173.59050 * 15 13 12 18 18 H 1.48499 * 109.46718 * 90.00656 * 17 15 13 19 19 H 1.48503 * 109.47073 * 210.00218 * 17 15 13 20 20 H 1.48500 * 109.46951 * 330.00271 * 17 15 13 21 21 C 1.52994 * 117.49730 * 279.38194 * 12 11 10 22 22 C 1.52998 * 117.49950 * 210.71928 * 12 11 10 23 23 H 1.09002 * 109.46851 * 59.99768 * 1 2 3 24 24 H 1.08999 * 109.47748 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47285 * 300.00370 * 1 2 3 26 26 H 1.08997 * 110.49023 * 98.42594 * 5 3 2 27 27 H 1.08999 * 110.59783 * 335.83368 * 5 3 2 28 28 H 1.08994 * 110.75537 * 279.62702 * 6 5 3 29 29 H 1.08996 * 110.75357 * 156.25148 * 6 5 3 30 30 H 1.08996 * 110.48943 * 80.73234 * 7 6 5 31 31 H 1.08995 * 110.48570 * 203.24625 * 7 6 5 32 32 H 1.00898 * 111.00647 * 280.51065 * 10 8 3 33 33 H 1.09005 * 109.47287 * 305.35534 * 11 10 8 34 34 H 1.09004 * 109.47213 * 65.34980 * 11 10 8 35 35 H 0.97002 * 119.99924 * 179.97438 * 16 15 13 36 36 H 1.08996 * 117.50542 * 359.97438 * 21 12 11 37 37 H 1.09006 * 117.50054 * 145.01767 * 21 12 11 38 38 H 1.09002 * 117.49637 * 214.97575 * 22 12 11 39 39 H 1.09000 * 117.49781 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7328 2.2634 0.8383 5 6 1.7769 2.4126 -1.3287 6 6 2.8892 3.4440 -1.6417 7 6 4.1744 2.7098 -1.1851 8 6 3.7498 1.9567 0.0926 9 1 4.2461 0.9872 0.1369 10 7 4.0888 2.7509 1.2809 11 6 5.4701 2.4936 1.7098 12 6 5.7430 3.2326 3.0213 13 6 4.9425 2.7653 4.2095 14 1 4.0209 3.2647 4.4699 15 6 5.3864 1.7003 4.9641 16 7 6.4385 1.0129 4.5764 17 14 4.4938 1.2338 6.5374 18 1 3.4266 0.2487 6.2274 19 1 5.4580 0.6341 7.4945 20 1 3.8872 2.4475 7.1408 21 6 6.0759 4.7235 2.9359 22 6 7.1731 3.7122 3.2775 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.8162 2.9128 -1.2069 27 1 1.7184 1.6633 -2.1181 28 1 2.7414 4.3580 -1.0665 29 1 2.9265 3.6599 -2.7094 30 1 4.5046 2.0072 -1.9502 31 1 4.9641 3.4268 -0.9606 32 1 3.9396 3.7346 1.1131 33 1 5.6105 1.4231 1.8599 34 1 6.1602 2.8465 0.9434 35 1 6.7510 0.2638 5.1076 36 1 6.1009 5.1778 1.9455 37 1 5.7162 5.3663 3.7394 38 1 7.5347 3.6902 4.3055 39 1 7.9194 3.5016 2.5115 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235272318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = -2.931085 kcal Electronic energy + Delta-G solvation = -17377.444499 eV Core-core repulsion = 14831.592730 eV Total energy + Delta-G solvation = -2545.851770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80771 -38.24090 -34.41263 -33.82152 -30.23892 -29.32727 -28.66672 -27.43872 -25.41027 -22.88223 -21.69026 -21.11802 -20.81424 -18.24172 -17.47503 -16.83407 -16.53107 -16.22497 -15.66610 -15.11377 -14.94182 -14.74184 -14.60404 -14.21494 -13.82686 -13.70547 -13.34581 -12.87409 -12.84957 -12.71219 -12.41337 -12.33146 -12.16108 -11.98834 -11.97259 -11.85628 -11.61826 -11.28353 -10.72831 -10.71406 -10.35990 -9.90845 -9.04843 -8.60418 -8.03091 -6.08782 0.82499 1.41338 1.43157 1.51477 1.74042 2.47803 3.22126 3.27712 3.53679 3.60530 3.83971 4.08325 4.34770 4.36284 4.37746 4.42631 4.46397 4.50761 4.56602 4.64421 4.70038 4.77777 4.81960 4.88179 4.91102 4.99967 5.02248 5.13105 5.18074 5.20009 5.29612 5.41318 5.65577 5.76624 5.89224 6.35721 6.51927 6.77845 6.94687 7.56350 9.06005 Molecular weight = 255.14amu Principal moments of inertia in cm(-1) A = 0.018648 B = 0.006980 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.134490 B = 4010.453950 C = 5076.273231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.325 6.325 3 C -0.032 4.032 4 H 0.085 0.915 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.146 4.146 8 C 0.104 3.896 9 H 0.052 0.948 10 N -0.668 5.668 11 C 0.129 3.871 12 C 0.024 3.976 13 C -0.479 4.479 14 H 0.048 0.952 15 C 0.021 3.979 16 N -0.912 5.912 17 Si 0.942 3.058 18 H -0.283 1.283 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.184 4.184 22 C -0.167 4.167 23 H 0.094 0.906 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.341 0.659 33 H 0.033 0.967 34 H 0.008 0.992 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.806 3.532 -13.677 17.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.098 6.098 3 C -0.161 4.161 4 H 0.103 0.897 5 C -0.150 4.150 6 C -0.148 4.148 7 C -0.186 4.186 8 C -0.007 4.007 9 H 0.070 0.930 10 N -0.298 5.298 11 C 0.000 4.000 12 C 0.024 3.976 13 C -0.517 4.517 14 H 0.066 0.934 15 C -0.178 4.178 16 N -0.551 5.551 17 Si 0.769 3.231 18 H -0.209 1.209 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.221 4.221 22 C -0.205 4.205 23 H 0.113 0.887 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.310 2.015 -13.133 16.224 hybrid contribution -0.265 0.661 0.686 0.989 sum -9.575 2.676 -12.447 15.930 Atomic orbital electron populations 1.23365 0.91199 1.07140 1.05648 1.87173 1.10868 1.13818 1.97964 1.23866 0.98715 0.91618 1.01917 0.89675 1.22757 0.99447 0.98526 0.94238 1.22434 0.92696 0.97516 1.02173 1.23021 0.98848 0.99542 0.97225 1.21942 0.92853 0.96621 0.89330 0.92962 1.60148 1.24945 1.11374 1.33366 1.21134 0.86852 0.98503 0.93503 1.18921 0.94116 0.90898 0.93707 1.20533 1.06754 1.14346 1.10036 0.93426 1.25577 0.95842 0.96209 1.00173 1.70111 1.26074 1.19846 1.39113 0.85815 0.78392 0.78311 0.80630 1.20932 1.21161 1.19337 1.22973 1.04731 0.93574 1.00868 1.22431 0.92979 1.05860 0.99256 0.88727 0.87325 0.90577 0.89772 0.89988 0.90867 0.89200 0.90818 0.91692 0.84039 0.94852 0.97363 0.93630 0.89065 0.90574 0.92529 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.61 113.37 1.20 -0.94 16 2 S -0.33 -9.81 21.35 -56.49 -1.21 -11.01 16 3 C -0.03 -0.90 3.22 31.44 0.10 -0.80 16 4 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 5 C -0.11 -2.21 6.20 31.67 0.20 -2.01 16 6 C -0.11 -2.08 6.91 31.89 0.22 -1.86 16 7 C -0.15 -3.65 6.22 31.67 0.20 -3.46 16 8 C 0.10 3.40 2.92 45.76 0.13 3.53 16 9 H 0.05 2.03 7.22 -2.39 -0.02 2.02 16 10 N -0.67 -25.65 5.99 -487.22 -2.92 -28.57 16 11 C 0.13 5.83 5.34 86.30 0.46 6.29 16 12 C 0.02 1.19 1.55 -52.93 -0.08 1.11 16 13 C -0.48 -26.67 8.74 25.60 0.22 -26.45 16 14 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 15 C 0.02 1.18 5.39 84.65 0.46 1.64 16 16 N -0.91 -54.07 12.92 21.45 0.28 -53.79 16 17 Si 0.94 45.51 29.54 68.60 2.03 47.54 16 18 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 21 C -0.18 -7.68 9.96 30.62 0.30 -7.37 16 22 C -0.17 -7.90 9.41 30.62 0.29 -7.61 16 23 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.58 7.82 -2.39 -0.02 1.56 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.67 7.68 -2.39 -0.02 1.65 16 32 H 0.34 11.74 8.52 -89.70 -0.76 10.97 16 33 H 0.03 1.77 7.94 -2.38 -0.02 1.75 16 34 H 0.01 0.35 7.80 -2.39 -0.02 0.33 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 38 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -63.11 328.16 2.12 -60.99 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.24 Total: 22.77 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 3.70 Total: -37.93 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -2.64 Total: -82.36 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 16 Polarization: -9.81 SS G_CDS: -1.21 Total: -11.01 kcal Total: -63.11 2.12 -60.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235272318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.062 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds